Wall clock time and date at job start Tue Mar 31 2020 22:58:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.87320 * 2 1 4 4 C 1.54326 * 109.88321 * 121.16994 * 2 1 3 5 5 C 1.55154 * 102.94397 * 141.61321 * 4 2 1 6 6 H 1.08997 * 111.03956 * 206.41332 * 5 4 2 7 7 N 1.46501 * 111.00164 * 82.57487 * 5 4 2 8 8 C 1.38567 * 119.99751 * 161.35204 * 7 5 4 9 9 C 1.39470 * 120.51602 * 0.02562 * 8 7 5 10 10 C 1.38467 * 118.31205 * 179.97438 * 9 8 7 11 11 F 1.35101 * 120.43372 * 180.02562 * 10 9 8 12 12 N 1.32794 * 119.13867 * 359.97438 * 10 9 8 13 13 C 1.31761 * 120.96348 * 0.02562 * 12 10 9 14 14 N 1.31757 * 121.85844 * 359.97438 * 13 12 10 15 15 C 1.54913 * 101.57829 * 324.50315 * 5 4 2 16 16 N 1.47014 * 109.88709 * 238.98350 * 2 1 3 17 17 C 1.34781 * 125.64891 * 61.67750 * 16 2 1 18 18 O 1.21280 * 119.99877 * 359.97438 * 17 16 2 19 19 C 1.50698 * 119.99840 * 179.97438 * 17 16 2 20 20 S 1.80999 * 109.46917 * 179.97438 * 19 17 16 21 21 C 1.76205 * 100.00191 * 180.02562 * 20 19 17 22 22 H 1.08001 * 119.99572 * 0.02562 * 21 20 19 23 23 C 1.38797 * 120.00336 * 179.97438 * 21 20 19 24 24 N 1.31621 * 120.00269 * 179.97438 * 23 21 20 25 25 Si 1.86803 * 119.99611 * 0.02562 * 23 21 20 26 26 H 1.48499 * 109.47255 * 90.00148 * 25 23 21 27 27 H 1.48500 * 109.46870 * 209.99730 * 25 23 21 28 28 H 1.48494 * 109.47333 * 329.99486 * 25 23 21 29 29 H 1.08999 * 109.47083 * 179.56023 * 1 2 3 30 30 H 1.08993 * 109.47297 * 299.56592 * 1 2 3 31 31 H 1.09005 * 109.46629 * 59.56702 * 1 2 3 32 32 H 1.09004 * 110.71860 * 23.25112 * 4 2 1 33 33 H 1.08999 * 110.72228 * 259.98527 * 4 2 1 34 34 H 0.96996 * 120.00171 * 341.35243 * 7 5 4 35 35 H 1.07994 * 120.84193 * 359.95163 * 9 8 7 36 36 H 1.08000 * 119.06525 * 180.02562 * 13 12 10 37 37 H 1.09005 * 110.36622 * 155.84517 * 15 5 4 38 38 H 1.09005 * 110.36429 * 278.05418 * 15 5 4 39 39 H 1.08999 * 109.47065 * 299.99626 * 19 17 16 40 40 H 1.09003 * 109.47412 * 60.00136 * 19 17 16 41 41 H 0.97002 * 120.00602 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0252 0.0000 4 6 2.0549 -0.7511 1.2418 5 6 3.2877 -1.5151 0.6905 6 1 3.4859 -2.4126 1.2763 7 7 4.4674 -0.6475 0.6487 8 6 5.7338 -1.2037 0.5650 9 6 5.8977 -2.5880 0.5194 10 6 7.1836 -3.0946 0.4354 11 9 7.3918 -4.4287 0.3882 12 7 8.2095 -2.2522 0.4009 13 6 8.0186 -0.9493 0.4459 14 7 6.8122 -0.4255 0.5259 15 6 2.8146 -1.8783 -0.7392 16 7 2.0301 -0.7124 -1.1848 17 6 1.8087 -0.3578 -2.4661 18 8 1.1452 0.6259 -2.7171 19 6 2.3855 -1.1837 -3.5869 20 16 1.9150 -0.4565 -5.1762 21 6 2.6987 -1.5892 -6.2751 22 1 3.2588 -2.4242 -5.8807 23 6 2.5954 -1.4090 -7.6474 24 7 3.1813 -2.2548 -8.4682 25 14 1.6260 0.0349 -8.3294 26 1 2.5280 1.2030 -8.4942 27 1 1.0488 -0.3345 -9.6468 28 1 0.5307 0.3839 -7.3894 29 1 -0.3633 -1.0276 -0.0079 30 1 -0.3633 0.5070 0.8938 31 1 -0.3633 0.5206 -0.8861 32 1 1.3051 -1.4481 1.6163 33 1 2.3528 -0.0486 2.0201 34 1 4.3621 0.3162 0.6796 35 1 5.0434 -3.2479 0.5492 36 1 8.8751 -0.2921 0.4154 37 1 3.6718 -2.0317 -1.3949 38 1 2.1904 -2.7716 -0.7168 39 1 3.4721 -1.2020 -3.5028 40 1 1.9991 -2.2011 -3.5247 41 1 3.1088 -2.1291 -9.4273 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123158803.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:23 Heat of formation + Delta-G solvation = -15.688142 kcal Electronic energy + Delta-G solvation = -26807.278300 eV Core-core repulsion = 22763.554881 eV Total energy + Delta-G solvation = -4043.723420 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.111 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.41864 -41.31119 -40.32332 -38.05452 -35.83196 -33.21131 -32.48341 -32.41914 -31.56138 -29.77569 -28.92078 -26.31584 -25.64574 -24.96841 -23.92890 -22.72998 -21.35016 -19.29744 -19.03949 -18.57999 -17.73645 -17.08242 -16.70690 -16.53571 -16.00107 -15.87834 -15.54392 -15.15639 -14.97614 -14.84876 -14.62348 -14.37818 -14.08472 -13.87549 -13.77837 -13.35005 -13.06244 -12.81166 -12.73327 -12.44229 -12.22758 -11.93595 -11.57903 -11.51307 -11.29753 -11.20184 -11.03771 -10.99547 -10.64753 -10.17257 -9.88788 -9.79354 -9.57318 -9.03315 -8.89815 -8.59369 -8.54548 -6.96140 -6.31436 -4.03981 0.53292 0.86355 2.35849 2.58538 2.85178 3.08679 3.10469 3.30933 3.39803 3.47518 3.54309 3.80331 3.88813 4.00300 4.21643 4.30307 4.37574 4.62609 4.67632 4.74451 4.79948 4.86871 5.01366 5.07538 5.13004 5.19155 5.21210 5.27263 5.31194 5.38192 5.47497 5.69455 5.83092 5.87724 5.93740 6.08967 6.18909 6.32084 6.66230 6.99576 7.43483 7.76404 7.91399 8.34301 8.38803 9.14479 10.77829 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.009819 B = 0.003383 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2850.808563 B = 8273.766893 C =10283.683201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.133 3.867 3 H 0.076 0.924 4 C -0.131 4.131 5 C 0.133 3.867 6 H 0.110 0.890 7 N -0.691 5.691 8 C 0.466 3.534 9 C -0.320 4.320 10 C 0.387 3.613 11 F -0.101 7.101 12 N -0.593 5.593 13 C 0.379 3.621 14 N -0.582 5.582 15 C 0.082 3.918 16 N -0.619 5.619 17 C 0.550 3.450 18 O -0.512 6.512 19 C -0.118 4.118 20 S -0.140 6.140 21 C -0.522 4.522 22 H 0.088 0.912 23 C 0.097 3.903 24 N -0.879 5.879 25 Si 0.856 3.144 26 H -0.267 1.267 27 H -0.274 1.274 28 H -0.235 1.235 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.100 0.900 33 H 0.091 0.909 34 H 0.414 0.586 35 H 0.155 0.845 36 H 0.208 0.792 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.093 0.907 40 H 0.096 0.904 41 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.070 0.080 25.795 25.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.030 3.970 3 H 0.094 0.906 4 C -0.169 4.169 5 C 0.026 3.974 6 H 0.128 0.872 7 N -0.322 5.322 8 C 0.222 3.778 9 C -0.350 4.350 10 C 0.229 3.771 11 F -0.080 7.080 12 N -0.318 5.318 13 C 0.090 3.910 14 N -0.307 5.307 15 C -0.043 4.043 16 N -0.356 5.356 17 C 0.339 3.661 18 O -0.386 6.386 19 C -0.269 4.269 20 S 0.086 5.914 21 C -0.670 4.670 22 H 0.106 0.894 23 C -0.112 4.112 24 N -0.516 5.516 25 Si 0.681 3.319 26 H -0.192 1.192 27 H -0.199 1.199 28 H -0.159 1.159 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.093 0.907 32 H 0.118 0.882 33 H 0.110 0.890 34 H 0.252 0.748 35 H 0.172 0.828 36 H 0.224 0.776 37 H 0.102 0.898 38 H 0.103 0.897 39 H 0.111 0.889 40 H 0.114 0.886 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.668 1.890 25.110 25.236 hybrid contribution -0.089 -1.252 -0.344 1.302 sum 1.579 0.638 24.766 24.824 Atomic orbital electron populations 1.22143 0.94328 1.02494 1.03187 1.21526 0.95184 0.96368 0.83920 0.90606 1.23069 0.96139 1.00355 0.97362 1.22268 0.84321 0.94433 0.96337 0.87191 1.44443 1.00864 1.09911 1.76955 1.18232 0.86442 0.87710 0.85400 1.21800 0.98322 0.95958 1.18884 1.18003 0.89215 0.79110 0.90814 1.91672 1.95773 1.28211 1.92325 1.67867 1.35186 1.05559 1.23186 1.24558 0.93255 0.87233 0.85989 1.68017 0.98827 1.40203 1.23646 1.22869 0.96335 0.89808 0.95260 1.48493 1.53792 1.28480 1.04881 1.19956 0.79765 0.84990 0.81436 1.90700 1.38564 1.26800 1.82541 1.23261 1.03874 1.02476 0.97273 1.84773 1.70775 1.40366 0.95475 1.22294 1.38035 1.13809 0.92840 0.89444 1.24699 0.94501 0.96206 0.95777 1.69932 1.42099 1.35997 1.03546 0.86744 0.82230 0.82803 0.80135 1.19182 1.19870 1.15939 0.92363 0.91854 0.90704 0.88194 0.88998 0.74828 0.82778 0.77571 0.89767 0.89728 0.88886 0.88614 0.91891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.56 9.11 37.16 0.34 -1.22 16 2 C 0.13 1.21 3.45 -66.96 -0.23 0.98 16 3 H 0.08 0.75 8.14 -51.92 -0.42 0.33 16 4 C -0.13 -0.64 6.05 -24.90 -0.15 -0.79 16 5 C 0.13 0.76 2.96 -65.78 -0.20 0.56 16 6 H 0.11 0.40 6.74 -51.93 -0.35 0.05 16 7 N -0.69 -5.13 5.38 -51.73 -0.28 -5.41 16 8 C 0.47 4.37 7.71 -154.76 -1.19 3.18 16 9 C -0.32 -2.87 9.29 -39.04 -0.36 -3.23 16 10 C 0.39 4.20 8.50 -17.05 -0.14 4.05 16 11 F -0.10 -1.11 17.30 2.25 0.04 -1.07 16 12 N -0.59 -6.72 10.45 -14.98 -0.16 -6.88 16 13 C 0.38 3.62 12.28 -92.21 -1.13 2.48 16 14 N -0.58 -6.02 10.47 -13.84 -0.14 -6.17 16 15 C 0.08 0.70 6.39 -2.53 -0.02 0.69 16 16 N -0.62 -7.38 3.06 -163.01 -0.50 -7.88 16 17 C 0.55 9.53 7.66 -10.98 -0.08 9.45 16 18 O -0.51 -10.65 14.90 5.56 0.08 -10.57 16 19 C -0.12 -2.29 5.16 36.00 0.19 -2.11 16 20 S -0.14 -3.54 18.55 -107.50 -1.99 -5.54 16 21 C -0.52 -15.06 10.04 30.94 0.31 -14.75 16 22 H 0.09 2.64 8.03 -52.49 -0.42 2.22 16 23 C 0.10 2.84 5.50 -17.44 -0.10 2.74 16 24 N -0.88 -26.58 13.97 55.49 0.78 -25.81 16 25 Si 0.86 21.77 27.74 -169.99 -4.72 17.05 16 26 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 27 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 28 H -0.24 -5.96 6.74 56.52 0.38 -5.58 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.99 6.88 -51.93 -0.36 0.63 16 32 H 0.10 0.35 7.85 -51.93 -0.41 -0.05 16 33 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.41 3.11 8.74 -40.82 -0.36 2.75 16 35 H 0.15 1.00 6.43 -52.49 -0.34 0.66 16 36 H 0.21 1.22 8.06 -52.49 -0.42 0.80 16 37 H 0.08 0.84 7.48 -51.93 -0.39 0.46 16 38 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.09 1.74 7.85 -51.92 -0.41 1.34 16 40 H 0.10 1.73 8.14 -51.91 -0.42 1.31 16 41 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 362.09 15.07 5.46 5.46 Total: -1.00 -35.62 362.09 -9.35 -44.97 By element: Atomic # 1 Polarization: 4.95 SS G_CDS: -5.14 Total: -0.19 kcal Atomic # 6 Polarization: 4.81 SS G_CDS: -2.77 Total: 2.04 kcal Atomic # 7 Polarization: -51.84 SS G_CDS: -0.30 Total: -52.14 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: 0.08 Total: -10.57 kcal Atomic # 9 Polarization: -1.11 SS G_CDS: 0.04 Total: -1.07 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.72 Total: 17.05 kcal Atomic # 16 Polarization: -3.54 SS G_CDS: -1.99 Total: -5.54 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -35.62 -9.35 -44.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123158803.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.282 kcal (2) G-P(sol) polarization free energy of solvation -35.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds