Wall clock time and date at job start Tue Mar 31 2020 22:58:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.87320 * 2 1 4 4 C 1.54326 * 109.88321 * 121.16994 * 2 1 3 5 5 C 1.55154 * 102.94397 * 141.61321 * 4 2 1 6 6 H 1.08997 * 111.03956 * 206.41332 * 5 4 2 7 7 N 1.46501 * 111.00164 * 82.57487 * 5 4 2 8 8 C 1.38567 * 119.99751 * 161.35204 * 7 5 4 9 9 C 1.39470 * 120.51602 * 0.02562 * 8 7 5 10 10 C 1.38467 * 118.31205 * 179.97438 * 9 8 7 11 11 F 1.35101 * 120.43372 * 180.02562 * 10 9 8 12 12 N 1.32794 * 119.13867 * 359.97438 * 10 9 8 13 13 C 1.31761 * 120.96348 * 0.02562 * 12 10 9 14 14 N 1.31757 * 121.85844 * 359.97438 * 13 12 10 15 15 C 1.54913 * 101.57829 * 324.50315 * 5 4 2 16 16 N 1.47014 * 109.88709 * 238.98350 * 2 1 3 17 17 C 1.34781 * 125.64891 * 61.67750 * 16 2 1 18 18 O 1.21280 * 119.99877 * 359.97438 * 17 16 2 19 19 C 1.50698 * 119.99840 * 179.97438 * 17 16 2 20 20 S 1.80999 * 109.46917 * 179.97438 * 19 17 16 21 21 C 1.76205 * 100.00191 * 180.02562 * 20 19 17 22 22 H 1.08001 * 119.99572 * 0.02562 * 21 20 19 23 23 C 1.38797 * 120.00336 * 179.97438 * 21 20 19 24 24 N 1.31621 * 120.00269 * 179.97438 * 23 21 20 25 25 Si 1.86803 * 119.99611 * 0.02562 * 23 21 20 26 26 H 1.48499 * 109.47255 * 90.00148 * 25 23 21 27 27 H 1.48500 * 109.46870 * 209.99730 * 25 23 21 28 28 H 1.48494 * 109.47333 * 329.99486 * 25 23 21 29 29 H 1.08999 * 109.47083 * 179.56023 * 1 2 3 30 30 H 1.08993 * 109.47297 * 299.56592 * 1 2 3 31 31 H 1.09005 * 109.46629 * 59.56702 * 1 2 3 32 32 H 1.09004 * 110.71860 * 23.25112 * 4 2 1 33 33 H 1.08999 * 110.72228 * 259.98527 * 4 2 1 34 34 H 0.96996 * 120.00171 * 341.35243 * 7 5 4 35 35 H 1.07994 * 120.84193 * 359.95163 * 9 8 7 36 36 H 1.08000 * 119.06525 * 180.02562 * 13 12 10 37 37 H 1.09005 * 110.36622 * 155.84517 * 15 5 4 38 38 H 1.09005 * 110.36429 * 278.05418 * 15 5 4 39 39 H 1.08999 * 109.47065 * 299.99626 * 19 17 16 40 40 H 1.09003 * 109.47412 * 60.00136 * 19 17 16 41 41 H 0.97002 * 120.00602 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0252 0.0000 4 6 2.0549 -0.7511 1.2418 5 6 3.2877 -1.5151 0.6905 6 1 3.4859 -2.4126 1.2763 7 7 4.4674 -0.6475 0.6487 8 6 5.7338 -1.2037 0.5650 9 6 5.8977 -2.5880 0.5194 10 6 7.1836 -3.0946 0.4354 11 9 7.3918 -4.4287 0.3882 12 7 8.2095 -2.2522 0.4009 13 6 8.0186 -0.9493 0.4459 14 7 6.8122 -0.4255 0.5259 15 6 2.8146 -1.8783 -0.7392 16 7 2.0301 -0.7124 -1.1848 17 6 1.8087 -0.3578 -2.4661 18 8 1.1452 0.6259 -2.7171 19 6 2.3855 -1.1837 -3.5869 20 16 1.9150 -0.4565 -5.1762 21 6 2.6987 -1.5892 -6.2751 22 1 3.2588 -2.4242 -5.8807 23 6 2.5954 -1.4090 -7.6474 24 7 3.1813 -2.2548 -8.4682 25 14 1.6260 0.0349 -8.3294 26 1 2.5280 1.2030 -8.4942 27 1 1.0488 -0.3345 -9.6468 28 1 0.5307 0.3839 -7.3894 29 1 -0.3633 -1.0276 -0.0079 30 1 -0.3633 0.5070 0.8938 31 1 -0.3633 0.5206 -0.8861 32 1 1.3051 -1.4481 1.6163 33 1 2.3528 -0.0486 2.0201 34 1 4.3621 0.3162 0.6796 35 1 5.0434 -3.2479 0.5492 36 1 8.8751 -0.2921 0.4154 37 1 3.6718 -2.0317 -1.3949 38 1 2.1904 -2.7716 -0.7168 39 1 3.4721 -1.2020 -3.5028 40 1 1.9991 -2.2011 -3.5247 41 1 3.1088 -2.1291 -9.4273 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123158803.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:22 Heat of formation + Delta-G solvation = -39.947136 kcal Electronic energy + Delta-G solvation = -26808.330249 eV Core-core repulsion = 22763.554881 eV Total energy + Delta-G solvation = -4044.775368 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.111 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.21274 -42.02824 -41.26367 -39.11697 -36.63245 -34.71773 -33.96592 -33.42023 -32.26274 -30.58796 -30.17316 -27.89820 -26.99415 -25.69551 -24.66204 -23.63458 -21.99863 -20.45697 -19.85631 -19.51754 -19.30546 -18.19539 -17.60916 -17.33853 -17.15617 -16.71802 -16.68549 -16.58108 -16.16429 -15.82337 -15.65418 -15.34486 -15.11713 -14.93844 -14.74279 -14.68289 -14.29747 -13.93424 -13.65872 -13.38485 -13.30811 -13.15940 -13.03699 -12.68642 -12.62761 -12.24800 -12.15362 -11.92241 -11.89227 -11.65951 -11.21151 -10.98382 -10.87805 -10.59701 -10.54985 -9.82030 -9.32880 -9.05300 -8.55432 -6.27309 -0.18614 0.13650 0.92358 1.28302 1.41753 1.49810 1.50063 1.76553 2.01047 2.21430 2.36920 2.63022 2.67980 2.82894 3.19967 3.28499 3.35814 3.59213 3.74280 3.88064 4.00410 4.08594 4.12217 4.15305 4.31324 4.35415 4.36502 4.56142 4.58981 4.64938 4.76141 4.82254 4.93601 5.10074 5.22810 5.31692 5.48141 5.53419 5.66304 6.00043 6.06531 6.30890 6.36397 6.89393 7.05788 7.06113 8.57212 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.009819 B = 0.003383 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2850.808563 B = 8273.766893 C =10283.683201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.125 3.875 3 H 0.065 0.935 4 C -0.111 4.111 5 C 0.139 3.861 6 H 0.146 0.854 7 N -0.685 5.685 8 C 0.458 3.542 9 C -0.311 4.311 10 C 0.365 3.635 11 F -0.108 7.108 12 N -0.618 5.618 13 C 0.374 3.626 14 N -0.599 5.599 15 C 0.070 3.930 16 N -0.607 5.607 17 C 0.549 3.451 18 O -0.556 6.556 19 C -0.103 4.103 20 S -0.171 6.171 21 C -0.531 4.531 22 H 0.059 0.941 23 C 0.048 3.952 24 N -0.916 5.916 25 Si 0.914 3.086 26 H -0.263 1.263 27 H -0.257 1.257 28 H -0.236 1.236 29 H 0.065 0.935 30 H 0.090 0.910 31 H 0.031 0.969 32 H 0.127 0.873 33 H 0.114 0.886 34 H 0.414 0.586 35 H 0.181 0.819 36 H 0.234 0.766 37 H 0.069 0.931 38 H 0.110 0.890 39 H 0.097 0.903 40 H 0.108 0.892 41 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.140 0.134 28.505 28.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.023 3.977 3 H 0.083 0.917 4 C -0.149 4.149 5 C 0.034 3.966 6 H 0.163 0.837 7 N -0.316 5.316 8 C 0.213 3.787 9 C -0.340 4.340 10 C 0.207 3.793 11 F -0.087 7.087 12 N -0.344 5.344 13 C 0.086 3.914 14 N -0.324 5.324 15 C -0.054 4.054 16 N -0.342 5.342 17 C 0.337 3.663 18 O -0.435 6.435 19 C -0.254 4.254 20 S 0.056 5.944 21 C -0.679 4.679 22 H 0.077 0.923 23 C -0.158 4.158 24 N -0.554 5.554 25 Si 0.736 3.264 26 H -0.188 1.188 27 H -0.181 1.181 28 H -0.160 1.160 29 H 0.084 0.916 30 H 0.109 0.891 31 H 0.050 0.950 32 H 0.146 0.854 33 H 0.133 0.867 34 H 0.252 0.748 35 H 0.198 0.802 36 H 0.250 0.750 37 H 0.087 0.913 38 H 0.128 0.872 39 H 0.116 0.884 40 H 0.127 0.873 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.745 1.908 27.873 27.948 hybrid contribution 0.244 -1.321 -1.041 1.700 sum 0.990 0.587 26.831 26.856 Atomic orbital electron populations 1.22097 0.94506 1.02688 1.02419 1.21831 0.95107 0.96453 0.84350 0.91660 1.23073 0.95810 1.00694 0.95319 1.22462 0.83903 0.95635 0.94641 0.83666 1.44590 1.00661 1.10202 1.76100 1.18452 0.86920 0.87985 0.85305 1.21975 0.98318 0.96105 1.17619 1.18289 0.90095 0.78968 0.91913 1.91649 1.95885 1.28639 1.92529 1.67866 1.35994 1.06362 1.24190 1.25121 0.94007 0.87064 0.85255 1.68069 0.99388 1.40721 1.24262 1.23256 0.95955 0.89407 0.96775 1.48410 1.52700 1.29272 1.03819 1.19495 0.79717 0.84293 0.82835 1.90683 1.40739 1.28494 1.83541 1.23202 1.04288 1.03073 0.94814 1.84658 1.70760 1.40402 0.98626 1.22433 1.37822 1.13683 0.93951 0.92284 1.25553 0.95408 0.98678 0.96127 1.70010 1.43458 1.37730 1.04204 0.85875 0.80934 0.79641 0.79976 1.18751 1.18070 1.15990 0.91575 0.89138 0.95005 0.85439 0.86736 0.74840 0.80177 0.74971 0.91287 0.87161 0.88450 0.87338 0.91276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.68 9.11 71.98 0.66 -2.02 16 2 C 0.13 1.93 3.45 45.34 0.16 2.08 16 3 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 4 C -0.11 -0.52 6.05 31.78 0.19 -0.33 16 5 C 0.14 0.96 2.96 46.38 0.14 1.10 16 6 H 0.15 0.17 6.74 -2.39 -0.02 0.15 16 7 N -0.69 -8.05 5.38 -317.57 -1.71 -9.76 16 8 C 0.46 7.59 7.71 133.10 1.03 8.61 16 9 C -0.31 -4.87 9.29 22.62 0.21 -4.66 16 10 C 0.36 7.59 8.50 84.60 0.72 8.31 16 11 F -0.11 -2.33 17.30 44.97 0.78 -1.55 16 12 N -0.62 -13.73 10.45 -201.32 -2.10 -15.83 16 13 C 0.37 6.83 12.28 180.91 2.22 9.05 16 14 N -0.60 -11.59 10.47 -197.70 -2.07 -13.66 16 15 C 0.07 0.97 6.39 86.86 0.55 1.52 16 16 N -0.61 -13.30 3.06 -788.04 -2.41 -15.72 16 17 C 0.55 18.81 7.66 87.66 0.67 19.48 16 18 O -0.56 -23.46 14.90 -3.03 -0.05 -23.51 16 19 C -0.10 -3.98 5.16 71.24 0.37 -3.61 16 20 S -0.17 -8.76 18.55 -56.49 -1.05 -9.80 16 21 C -0.53 -31.36 10.04 67.95 0.68 -30.68 16 22 H 0.06 3.69 8.03 -2.91 -0.02 3.67 16 23 C 0.05 2.84 5.50 84.86 0.47 3.31 16 24 N -0.92 -56.26 13.97 21.65 0.30 -55.96 16 25 Si 0.91 45.27 27.74 68.60 1.90 47.18 16 26 H -0.26 -12.74 7.11 99.48 0.71 -12.03 16 27 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 28 H -0.24 -11.64 6.74 99.48 0.67 -10.97 16 29 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.03 0.82 6.88 -2.38 -0.02 0.80 16 32 H 0.13 0.06 7.85 -2.39 -0.02 0.04 16 33 H 0.11 0.18 8.14 -2.39 -0.02 0.16 16 34 H 0.41 5.08 8.74 -92.71 -0.81 4.27 16 35 H 0.18 1.67 6.43 -2.91 -0.02 1.65 16 36 H 0.23 2.52 8.06 -2.91 -0.02 2.49 16 37 H 0.07 1.22 7.48 -2.38 -0.02 1.21 16 38 H 0.11 1.07 8.14 -2.38 -0.02 1.05 16 39 H 0.10 3.66 7.85 -2.40 -0.02 3.64 16 40 H 0.11 3.88 8.14 -2.39 -0.02 3.86 16 41 H 0.28 15.73 8.31 -92.71 -0.77 14.96 16 Total: -1.00 -81.39 362.09 1.89 -79.50 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: 0.23 Total: 6.96 kcal Atomic # 6 Polarization: 4.09 SS G_CDS: 8.06 Total: 12.16 kcal Atomic # 7 Polarization: -102.94 SS G_CDS: -7.99 Total: -110.93 kcal Atomic # 8 Polarization: -23.46 SS G_CDS: -0.05 Total: -23.51 kcal Atomic # 9 Polarization: -2.33 SS G_CDS: 0.78 Total: -1.55 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 1.90 Total: 47.18 kcal Atomic # 16 Polarization: -8.76 SS G_CDS: -1.05 Total: -9.80 kcal Total: -81.39 1.89 -79.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123158803.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.551 kcal (2) G-P(sol) polarization free energy of solvation -81.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds