Wall clock time and date at job start Tue Mar 31 2020 22:58:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 110.41477 * 2 1 4 4 C 1.54914 * 110.36609 * 237.70440 * 2 1 3 5 5 C 1.55405 * 101.66697 * 204.23699 * 4 2 1 6 6 H 1.09000 * 110.69068 * 277.04987 * 5 4 2 7 7 N 1.46495 * 110.85076 * 153.69955 * 5 4 2 8 8 C 1.38572 * 119.99632 * 160.08777 * 7 5 4 9 9 C 1.39463 * 120.51747 * 359.97438 * 8 7 5 10 10 C 1.38466 * 118.31028 * 180.02562 * 9 8 7 11 11 F 1.35101 * 120.42894 * 180.02562 * 10 9 8 12 12 N 1.32782 * 119.14166 * 0.02562 * 10 9 8 13 13 C 1.31763 * 120.96327 * 359.97438 * 12 10 9 14 14 N 1.31754 * 121.85831 * 359.71407 * 13 12 10 15 15 C 1.54325 * 102.82616 * 35.33729 * 5 4 2 16 16 N 1.47018 * 107.40412 * 337.97548 * 15 5 4 17 17 C 1.34777 * 125.64981 * 178.82520 * 16 15 5 18 18 O 1.21275 * 120.00167 * 180.02562 * 17 16 15 19 19 C 1.50694 * 119.99872 * 0.02817 * 17 16 15 20 20 S 1.81005 * 109.47459 * 179.97438 * 19 17 16 21 21 C 1.76198 * 100.00346 * 180.02562 * 20 19 17 22 22 H 1.08006 * 119.99544 * 359.97438 * 21 20 19 23 23 C 1.38788 * 119.99998 * 180.02562 * 21 20 19 24 24 N 1.31632 * 120.00249 * 359.97438 * 23 21 20 25 25 Si 1.86806 * 120.00208 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.46810 * 359.97438 * 25 23 21 27 27 H 1.48495 * 109.47380 * 119.99527 * 25 23 21 28 28 H 1.48502 * 109.47195 * 239.99665 * 25 23 21 29 29 H 1.09004 * 109.46570 * 299.15794 * 1 2 3 30 30 H 1.09003 * 109.47239 * 59.15236 * 1 2 3 31 31 H 1.08991 * 109.47514 * 179.16119 * 1 2 3 32 32 H 1.09000 * 111.00339 * 322.23129 * 4 2 1 33 33 H 1.09000 * 111.00165 * 86.04163 * 4 2 1 34 34 H 0.96997 * 120.00433 * 340.08762 * 7 5 4 35 35 H 1.08000 * 120.84118 * 359.97438 * 9 8 7 36 36 H 1.08003 * 119.07007 * 180.02562 * 13 12 10 37 37 H 1.09002 * 109.88192 * 218.47989 * 15 5 4 38 38 H 1.09000 * 109.88128 * 97.46841 * 15 5 4 39 39 H 1.08997 * 109.47569 * 299.99781 * 19 17 16 40 40 H 1.09007 * 109.47441 * 59.99852 * 19 17 16 41 41 H 0.97002 * 120.00418 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9102 1.0216 0.0000 4 6 2.0691 -0.7759 -1.2276 5 6 3.4795 -1.2034 -0.7346 6 1 4.1975 -0.3952 -0.8738 7 7 3.9254 -2.4187 -1.4204 8 6 5.2728 -2.7410 -1.4532 9 6 6.2135 -1.9159 -0.8373 10 6 7.5476 -2.2813 -0.8985 11 9 8.4947 -1.5137 -0.3163 12 7 7.8841 -3.3959 -1.5369 13 6 6.9691 -4.1526 -2.1080 14 7 5.6886 -3.8450 -2.0684 15 6 3.2493 -1.4769 0.7667 16 7 2.0431 -0.7384 1.1683 17 6 1.4965 -0.7374 2.4002 18 8 0.4954 -0.0887 2.6188 19 6 2.1292 -1.5423 3.5059 20 16 1.1701 -1.3363 5.0271 21 6 2.1063 -2.3537 6.1193 22 1 2.9839 -2.8692 5.7580 23 6 1.7154 -2.4935 7.4437 24 7 0.6455 -1.8657 7.8839 25 14 2.7075 -3.5728 8.6015 26 1 3.8547 -4.1634 7.8665 27 1 3.2125 -2.7527 9.7318 28 1 1.8436 -4.6606 9.1265 29 1 -0.3632 0.5007 0.8975 30 1 -0.3634 0.5270 -0.8823 31 1 -0.3634 -1.0274 -0.0150 32 1 1.4510 -1.6480 -1.4409 33 1 2.1392 -0.1266 -2.1003 34 1 3.2777 -2.9978 -1.8516 35 1 5.9091 -1.0144 -0.3264 36 1 7.2769 -5.0530 -2.6189 37 1 4.1065 -1.1281 1.3427 38 1 3.1022 -2.5444 0.9308 39 1 2.1447 -2.5955 3.2257 40 1 3.1494 -1.1950 3.6702 41 1 0.3724 -1.9631 8.8096 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123158807.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:29 Heat of formation + Delta-G solvation = -13.027522 kcal Electronic energy + Delta-G solvation = -26442.173711 eV Core-core repulsion = 22398.565664 eV Total energy + Delta-G solvation = -4043.608046 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.111 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.48633 -41.35716 -40.26451 -38.00920 -35.96073 -33.31140 -32.46584 -32.40209 -31.65468 -29.68457 -28.74312 -26.14814 -25.52331 -25.00488 -24.09155 -22.41103 -21.57628 -19.40071 -18.89276 -18.59998 -17.67700 -17.17514 -16.63600 -16.54608 -16.06521 -16.05050 -15.58923 -15.17209 -14.83862 -14.82926 -14.71373 -14.33492 -14.07626 -13.83381 -13.74906 -13.26525 -13.07441 -12.73710 -12.58515 -12.33648 -12.17856 -11.84067 -11.49092 -11.41549 -11.25391 -11.12534 -11.09401 -11.03387 -10.78683 -10.24863 -9.88878 -9.84250 -9.30811 -9.10763 -8.83382 -8.65040 -8.28741 -6.54853 -6.25467 -3.96486 0.44680 0.76946 2.21655 2.81219 2.95310 3.00896 3.19433 3.23408 3.28831 3.30849 3.53322 3.75611 3.87248 4.07465 4.15833 4.17088 4.38519 4.63889 4.68859 4.73859 4.82465 4.94655 5.09987 5.12757 5.21115 5.26069 5.28716 5.35949 5.47625 5.55077 5.59126 5.78812 5.83691 5.97514 6.06437 6.10248 6.18492 6.52489 6.57451 6.91769 7.51513 7.56671 7.66660 8.31803 8.45775 9.20276 10.81970 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.009546 B = 0.003012 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2932.418845 B = 9294.300800 C =11551.264049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.139 3.861 3 H 0.078 0.922 4 C -0.133 4.133 5 C 0.136 3.864 6 H 0.106 0.894 7 N -0.692 5.692 8 C 0.465 3.535 9 C -0.318 4.318 10 C 0.387 3.613 11 F -0.100 7.100 12 N -0.592 5.592 13 C 0.377 3.623 14 N -0.583 5.583 15 C 0.086 3.914 16 N -0.623 5.623 17 C 0.553 3.447 18 O -0.507 6.507 19 C -0.149 4.149 20 S -0.059 6.059 21 C -0.535 4.535 22 H 0.073 0.927 23 C 0.074 3.926 24 N -0.867 5.867 25 Si 0.918 3.082 26 H -0.272 1.272 27 H -0.279 1.279 28 H -0.279 1.279 29 H 0.094 0.906 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.087 0.913 33 H 0.093 0.907 34 H 0.415 0.585 35 H 0.155 0.845 36 H 0.208 0.792 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.087 0.913 40 H 0.088 0.912 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.961 0.089 -24.298 25.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.035 3.965 3 H 0.096 0.904 4 C -0.171 4.171 5 C 0.030 3.970 6 H 0.123 0.877 7 N -0.323 5.323 8 C 0.221 3.779 9 C -0.348 4.348 10 C 0.229 3.771 11 F -0.079 7.079 12 N -0.318 5.318 13 C 0.088 3.912 14 N -0.308 5.308 15 C -0.039 4.039 16 N -0.361 5.361 17 C 0.342 3.658 18 O -0.380 6.380 19 C -0.299 4.299 20 S 0.168 5.832 21 C -0.683 4.683 22 H 0.091 0.909 23 C -0.135 4.135 24 N -0.502 5.502 25 Si 0.745 3.255 26 H -0.196 1.196 27 H -0.205 1.205 28 H -0.205 1.205 29 H 0.112 0.888 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.105 0.895 33 H 0.112 0.888 34 H 0.253 0.747 35 H 0.173 0.827 36 H 0.224 0.776 37 H 0.093 0.907 38 H 0.095 0.905 39 H 0.105 0.895 40 H 0.106 0.894 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 7.552 0.532 -24.029 25.194 hybrid contribution 1.685 -0.897 0.921 2.119 sum 9.237 -0.365 -23.108 24.888 Atomic orbital electron populations 1.22182 0.93236 1.02986 1.03992 1.21811 0.95985 0.95365 0.83315 0.90366 1.23222 0.93897 1.01618 0.98400 1.22163 0.97348 0.86385 0.91120 0.87665 1.44476 1.03294 1.26407 1.58137 1.18256 0.85893 0.87455 0.86293 1.21851 0.92242 1.06941 1.13742 1.18002 0.83863 0.86687 0.88561 1.91679 1.64247 1.71798 1.80173 1.67865 1.40838 1.06958 1.16122 1.24558 0.81886 0.95769 0.88978 1.68019 1.19638 1.18307 1.24801 1.22459 0.88856 0.98047 0.94533 1.48505 1.28258 1.49799 1.09569 1.19988 0.83615 0.81217 0.81015 1.90653 1.24346 1.42318 1.80711 1.23537 1.04587 1.01719 1.00099 1.85369 1.36298 1.64266 0.97272 1.22889 1.14889 1.33474 0.97093 0.90926 1.24986 0.95325 0.95929 0.97280 1.70022 1.23180 1.40565 1.16470 0.86121 0.79621 0.79724 0.80078 1.19619 1.20492 1.20518 0.88768 0.92219 0.92513 0.89474 0.88845 0.74673 0.82714 0.77553 0.90655 0.90548 0.89454 0.89360 0.92196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.84 8.71 37.16 0.32 -1.52 16 2 C 0.14 1.35 3.77 -66.41 -0.25 1.10 16 3 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 4 C -0.13 -0.79 6.12 -24.44 -0.15 -0.94 16 5 C 0.14 0.86 2.90 -65.96 -0.19 0.66 16 6 H 0.11 0.54 6.70 -51.93 -0.35 0.20 16 7 N -0.69 -4.47 5.29 -51.90 -0.27 -4.74 16 8 C 0.46 3.89 7.71 -154.76 -1.19 2.70 16 9 C -0.32 -2.71 9.29 -39.04 -0.36 -3.07 16 10 C 0.39 3.92 8.50 -17.06 -0.14 3.77 16 11 F -0.10 -1.06 17.30 2.25 0.04 -1.02 16 12 N -0.59 -6.07 10.45 -14.99 -0.16 -6.23 16 13 C 0.38 3.08 12.28 -92.22 -1.13 1.95 16 14 N -0.58 -5.17 10.47 -13.84 -0.14 -5.32 16 15 C 0.09 0.82 6.23 -3.07 -0.02 0.80 16 16 N -0.62 -7.87 3.24 -163.05 -0.53 -8.39 16 17 C 0.55 9.91 7.65 -10.99 -0.08 9.82 16 18 O -0.51 -10.75 13.52 5.56 0.08 -10.67 16 19 C -0.15 -2.96 5.35 36.00 0.19 -2.77 16 20 S -0.06 -1.57 20.57 -107.50 -2.21 -3.78 16 21 C -0.54 -15.14 9.50 30.94 0.29 -14.85 16 22 H 0.07 1.96 7.80 -52.48 -0.41 1.55 16 23 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 24 N -0.87 -25.94 13.22 55.49 0.73 -25.21 16 25 Si 0.92 21.36 29.55 -169.99 -5.02 16.34 16 26 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 27 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 28 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 29 H 0.09 1.39 5.89 -51.93 -0.31 1.08 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.09 0.51 7.92 -51.93 -0.41 0.10 16 33 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.42 2.34 8.65 -40.82 -0.35 1.98 16 35 H 0.16 1.06 6.42 -52.49 -0.34 0.72 16 36 H 0.21 0.91 8.06 -52.48 -0.42 0.48 16 37 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.08 0.78 8.03 -51.93 -0.42 0.36 16 39 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 40 H 0.09 1.65 8.14 -51.91 -0.42 1.23 16 41 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 363.20 15.07 5.47 5.47 Total: -1.00 -34.81 363.20 -9.93 -44.74 By element: Atomic # 1 Polarization: 4.24 SS G_CDS: -5.10 Total: -0.85 kcal Atomic # 6 Polarization: 2.47 SS G_CDS: -2.81 Total: -0.34 kcal Atomic # 7 Polarization: -49.52 SS G_CDS: -0.37 Total: -49.89 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: 0.08 Total: -10.67 kcal Atomic # 9 Polarization: -1.06 SS G_CDS: 0.04 Total: -1.02 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: -1.57 SS G_CDS: -2.21 Total: -3.78 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.81 -9.93 -44.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123158807.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.715 kcal (2) G-P(sol) polarization free energy of solvation -34.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds