Wall clock time and date at job start Tue Mar 31 2020 23:15:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45194 * 109.47271 * 2 1 4 4 C 1.34228 * 117.00250 * 179.97438 * 3 2 1 5 5 O 1.20822 * 119.99759 * 359.97438 * 4 3 2 6 6 C 1.50701 * 120.00247 * 179.97438 * 4 3 2 7 7 N 1.46505 * 109.47097 * 179.97438 * 6 4 3 8 8 C 1.46492 * 120.00054 * 270.00061 * 7 6 4 9 9 C 1.50699 * 109.47295 * 269.99905 * 8 7 6 10 10 H 1.08008 * 119.99855 * 0.02562 * 9 8 7 11 11 C 1.37880 * 120.00111 * 180.02562 * 9 8 7 12 12 N 1.31515 * 120.00048 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 119.99865 * 180.02562 * 11 9 8 14 14 H 1.48505 * 109.47162 * 0.02562 * 13 11 9 15 15 H 1.48497 * 109.47302 * 120.00067 * 13 11 9 16 16 H 1.48502 * 109.47354 * 239.99998 * 13 11 9 17 17 C 1.39174 * 119.99459 * 90.00133 * 7 6 4 18 18 C 1.38992 * 119.60109 * 185.00099 * 17 7 6 19 19 C 1.39664 * 118.95584 * 180.27914 * 18 17 7 20 20 C 1.47907 * 120.90347 * 179.70143 * 19 18 17 21 21 O 1.21448 * 119.99884 * 179.97438 * 20 19 18 22 22 O 1.34681 * 120.00177 * 359.97438 * 20 19 18 23 23 C 1.45207 * 116.99962 * 180.02562 * 22 20 19 24 24 C 1.40258 * 118.18568 * 359.45953 * 19 18 17 25 25 F 1.35102 * 120.44786 * 180.23818 * 24 19 18 26 26 C 1.38270 * 119.09474 * 0.55966 * 24 19 18 27 27 N 1.31871 * 120.96095 * 359.70535 * 26 24 19 28 28 H 1.09004 * 109.47419 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47573 * 300.00606 * 1 2 3 30 30 H 1.08999 * 109.46922 * 60.00415 * 1 2 3 31 31 H 1.08993 * 109.47235 * 239.99288 * 2 1 3 32 32 H 1.08999 * 109.46922 * 119.99584 * 2 1 3 33 33 H 1.09006 * 109.47177 * 60.00124 * 6 4 3 34 34 H 1.08996 * 109.47140 * 299.99685 * 6 4 3 35 35 H 1.08998 * 109.47795 * 30.00048 * 8 7 6 36 36 H 1.09010 * 109.46993 * 150.00102 * 8 7 6 37 37 H 0.96997 * 119.99563 * 179.97438 * 12 11 9 38 38 H 1.08002 * 120.51809 * 359.97438 * 18 17 7 39 39 H 1.08997 * 109.46697 * 180.02562 * 23 22 20 40 40 H 1.09000 * 109.46935 * 300.00083 * 23 22 20 41 41 H 1.08994 * 109.47157 * 60.00366 * 23 22 20 42 42 H 1.08006 * 119.52119 * 179.72029 * 26 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5866 0.0015 6 6 3.9207 2.9374 0.0000 7 7 5.3838 2.8606 0.0014 8 6 6.1141 2.8232 1.2707 9 6 6.4390 4.2292 1.7050 10 1 6.1317 5.0670 1.0964 11 6 7.1285 4.4462 2.8791 12 7 7.5022 3.4261 3.6204 13 14 7.5305 6.1891 3.4177 14 1 7.0020 7.1508 2.4171 15 1 6.9054 6.4558 4.7381 16 1 9.0032 6.3464 3.5265 17 6 6.0797 2.8233 -1.2033 18 6 7.4581 2.6455 -1.1947 19 6 8.1437 2.6161 -2.4112 20 6 9.6112 2.4359 -2.4519 21 8 10.1907 2.4123 -3.5190 22 8 10.3049 2.2980 -1.3057 23 6 11.7420 2.1256 -1.4216 24 6 7.4020 2.7568 -3.5932 25 9 8.0180 2.7302 -4.7953 26 6 6.0326 2.9298 -3.5111 27 7 5.4212 2.9579 -2.3431 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.5844 3.4701 0.8895 34 1 3.5853 3.4689 -0.8905 35 1 5.4984 2.3415 2.0302 36 1 7.0385 2.2601 1.1416 37 1 7.9875 3.5788 4.4462 38 1 7.9913 2.5369 -0.2618 39 1 12.1772 2.0261 -0.4273 40 1 11.9546 1.2280 -2.0024 41 1 12.1728 2.9927 -1.9221 42 1 5.4553 3.0435 -4.4169 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157159656.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:15:59 Heat of formation + Delta-G solvation = -160.986194 kcal Electronic energy + Delta-G solvation = -29875.329937 eV Core-core repulsion = 25350.260299 eV Total energy + Delta-G solvation = -4525.069638 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.131 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -48.50324 -40.55503 -40.15950 -39.46169 -36.76869 -36.30199 -35.61591 -32.99622 -32.51283 -31.79310 -29.99826 -28.74612 -27.76380 -26.10322 -24.62592 -23.55322 -23.13895 -21.89434 -21.18722 -20.06471 -18.05968 -17.59334 -17.42820 -16.98979 -16.63189 -16.60081 -16.38675 -16.32572 -15.69467 -15.60326 -15.30129 -14.68343 -14.44562 -14.14687 -13.91380 -13.68185 -13.31849 -13.21811 -13.16342 -12.91913 -12.79886 -12.47192 -12.25527 -12.12198 -11.91307 -11.59181 -11.53768 -11.41287 -11.09264 -10.80893 -10.71072 -10.63072 -10.46579 -10.41721 -10.24653 -9.94592 -9.74877 -9.37717 -9.17659 -8.64242 -7.08920 -6.23283 -4.33939 0.72025 1.38936 2.56753 2.64198 2.69942 2.82119 3.18479 3.27543 3.30759 3.51417 4.02535 4.27986 4.33683 4.61321 4.77520 4.90106 4.90922 5.05233 5.08503 5.10723 5.17168 5.23381 5.23961 5.25666 5.52081 5.55886 5.65562 5.72143 5.76285 5.77942 5.84049 5.89342 6.24528 6.36783 6.53988 6.65285 6.84829 7.08355 7.36178 7.70533 7.78202 7.85788 7.93294 8.10463 8.27452 8.74274 9.34221 10.81432 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.006943 B = 0.004893 C = 0.003222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4031.627818 B = 5720.803424 C = 8689.194166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.061 3.939 3 O -0.363 6.363 4 C 0.443 3.557 5 O -0.499 6.499 6 C 0.140 3.860 7 N -0.564 5.564 8 C 0.251 3.749 9 C -0.543 4.543 10 H 0.065 0.935 11 C 0.067 3.933 12 N -0.888 5.888 13 Si 0.899 3.101 14 H -0.271 1.271 15 H -0.282 1.282 16 H -0.282 1.282 17 C 0.409 3.591 18 C -0.128 4.128 19 C -0.081 4.081 20 C 0.514 3.486 21 O -0.495 6.495 22 O -0.342 6.342 23 C 0.038 3.962 24 C 0.019 3.981 25 F -0.124 7.124 26 C 0.120 3.880 27 N -0.514 5.514 28 H 0.075 0.925 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.123 0.877 34 H 0.121 0.879 35 H 0.041 0.959 36 H 0.043 0.957 37 H 0.266 0.734 38 H 0.169 0.831 39 H 0.105 0.895 40 H 0.062 0.938 41 H 0.063 0.937 42 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.351 -3.575 -8.068 10.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.013 4.013 3 O -0.280 6.280 4 C 0.284 3.716 5 O -0.385 6.385 6 C 0.013 3.987 7 N -0.273 5.273 8 C 0.133 3.867 9 C -0.581 4.581 10 H 0.083 0.917 11 C -0.136 4.136 12 N -0.526 5.526 13 Si 0.726 3.274 14 H -0.196 1.196 15 H -0.208 1.208 16 H -0.208 1.208 17 C 0.172 3.828 18 C -0.154 4.154 19 C -0.090 4.090 20 C 0.358 3.642 21 O -0.383 6.383 22 O -0.258 6.258 23 C -0.056 4.056 24 C -0.006 4.006 25 F -0.102 7.102 26 C -0.039 4.039 27 N -0.232 5.232 28 H 0.094 0.906 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.141 0.859 34 H 0.138 0.862 35 H 0.059 0.941 36 H 0.061 0.939 37 H 0.076 0.924 38 H 0.186 0.814 39 H 0.123 0.877 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -5.779 -3.851 -7.973 10.573 hybrid contribution 1.504 0.506 0.179 1.597 sum -4.275 -3.346 -7.794 9.498 Atomic orbital electron populations 1.21788 0.92921 1.02628 1.03434 1.22927 0.95053 0.80954 1.02350 1.86508 1.25157 1.31821 1.84519 1.24986 0.80227 0.94243 0.72190 1.90651 1.60318 1.43035 1.44540 1.20794 0.81707 0.89483 1.06707 1.46837 1.03102 1.73323 1.04012 1.19564 0.92345 0.97702 0.77135 1.21534 1.37379 0.92231 1.07000 0.91671 1.24937 0.95151 0.97491 0.96069 1.69938 1.38199 1.30210 1.14213 0.86429 0.78276 0.84121 0.78589 1.19586 1.20826 1.20762 1.18290 0.88152 0.90127 0.86194 1.21985 0.93691 1.01098 0.98615 1.19259 0.90160 1.06033 0.93578 1.20881 0.87886 0.73280 0.82167 1.90851 1.70879 1.45798 1.30777 1.86634 1.22678 1.82641 1.33820 1.23305 0.76309 1.01992 1.03967 1.18295 0.91827 1.10362 0.80123 1.91517 1.82969 1.94191 1.41549 1.22320 0.89186 0.96452 0.95922 1.67019 1.39733 1.19357 0.97115 0.90593 0.91492 0.91567 0.91615 0.91464 0.85925 0.86168 0.94124 0.93895 0.92413 0.81397 0.87685 0.91903 0.91828 0.81376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 10.29 37.16 0.38 -0.91 16 2 C 0.06 0.74 6.19 37.16 0.23 0.97 16 3 O -0.36 -5.33 10.22 -39.25 -0.40 -5.73 16 4 C 0.44 7.60 8.03 36.01 0.29 7.89 16 5 O -0.50 -10.14 16.18 -18.75 -0.30 -10.44 16 6 C 0.14 2.32 6.06 -5.19 -0.03 2.29 16 7 N -0.56 -11.15 2.06 -176.59 -0.36 -11.52 16 8 C 0.25 5.77 5.00 -5.20 -0.03 5.75 16 9 C -0.54 -13.43 9.39 -34.44 -0.32 -13.75 16 10 H 0.07 1.62 7.81 -52.48 -0.41 1.21 16 11 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 12 N -0.89 -23.84 13.29 55.43 0.74 -23.10 16 13 Si 0.90 19.94 29.54 -169.99 -5.02 14.92 16 14 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 15 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 16 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 17 C 0.41 7.85 7.37 -154.98 -1.14 6.71 16 18 C -0.13 -2.46 8.86 -38.77 -0.34 -2.80 16 19 C -0.08 -1.46 5.91 -104.65 -0.62 -2.08 16 20 C 0.51 9.22 7.92 34.69 0.27 9.50 16 21 O -0.50 -9.45 15.27 -19.23 -0.29 -9.75 16 22 O -0.34 -5.68 9.91 -40.44 -0.40 -6.08 16 23 C 0.04 0.46 10.56 101.05 1.07 1.53 16 24 C 0.02 0.32 7.33 -38.81 -0.28 0.04 16 25 F -0.12 -2.12 15.71 2.25 0.04 -2.08 16 26 C 0.12 1.83 11.16 -17.52 -0.20 1.64 16 27 N -0.51 -8.87 9.04 -12.41 -0.11 -8.99 16 28 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.80 8.13 -51.93 -0.42 0.38 16 32 H 0.07 0.83 8.13 -51.93 -0.42 0.41 16 33 H 0.12 1.89 8.07 -51.93 -0.42 1.47 16 34 H 0.12 1.79 7.30 -51.93 -0.38 1.41 16 35 H 0.04 1.00 8.07 -51.93 -0.42 0.58 16 36 H 0.04 1.05 5.97 -51.92 -0.31 0.74 16 37 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 38 H 0.17 3.41 5.67 -52.49 -0.30 3.12 16 39 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.17 1.92 8.06 -52.48 -0.42 1.50 16 LS Contribution 376.43 15.07 5.67 5.67 Total: -1.00 -30.75 376.43 -6.44 -37.19 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: -5.17 Total: 1.52 kcal Atomic # 6 Polarization: 19.20 SS G_CDS: -0.82 Total: 18.38 kcal Atomic # 7 Polarization: -43.86 SS G_CDS: 0.26 Total: -43.60 kcal Atomic # 8 Polarization: -30.60 SS G_CDS: -1.40 Total: -32.00 kcal Atomic # 9 Polarization: -2.12 SS G_CDS: 0.04 Total: -2.08 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.02 Total: 14.92 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -30.75 -6.44 -37.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157159656.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.793 kcal (2) G-P(sol) polarization free energy of solvation -30.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds