Wall clock time and date at job start Tue Mar 31 2020 23:15:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45194 * 109.47271 * 2 1 4 4 C 1.34228 * 117.00250 * 179.97438 * 3 2 1 5 5 O 1.20822 * 119.99759 * 359.97438 * 4 3 2 6 6 C 1.50701 * 120.00247 * 179.97438 * 4 3 2 7 7 N 1.46505 * 109.47097 * 179.97438 * 6 4 3 8 8 C 1.46492 * 120.00054 * 270.00061 * 7 6 4 9 9 C 1.50699 * 109.47295 * 269.99905 * 8 7 6 10 10 H 1.08008 * 119.99855 * 0.02562 * 9 8 7 11 11 C 1.37880 * 120.00111 * 180.02562 * 9 8 7 12 12 N 1.31515 * 120.00048 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 119.99865 * 180.02562 * 11 9 8 14 14 H 1.48505 * 109.47162 * 0.02562 * 13 11 9 15 15 H 1.48497 * 109.47302 * 120.00067 * 13 11 9 16 16 H 1.48502 * 109.47354 * 239.99998 * 13 11 9 17 17 C 1.39174 * 119.99459 * 90.00133 * 7 6 4 18 18 C 1.38992 * 119.60109 * 185.00099 * 17 7 6 19 19 C 1.39664 * 118.95584 * 180.27914 * 18 17 7 20 20 C 1.47907 * 120.90347 * 179.70143 * 19 18 17 21 21 O 1.21448 * 119.99884 * 179.97438 * 20 19 18 22 22 O 1.34681 * 120.00177 * 359.97438 * 20 19 18 23 23 C 1.45207 * 116.99962 * 180.02562 * 22 20 19 24 24 C 1.40258 * 118.18568 * 359.45953 * 19 18 17 25 25 F 1.35102 * 120.44786 * 180.23818 * 24 19 18 26 26 C 1.38270 * 119.09474 * 0.55966 * 24 19 18 27 27 N 1.31871 * 120.96095 * 359.70535 * 26 24 19 28 28 H 1.09004 * 109.47419 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47573 * 300.00606 * 1 2 3 30 30 H 1.08999 * 109.46922 * 60.00415 * 1 2 3 31 31 H 1.08993 * 109.47235 * 239.99288 * 2 1 3 32 32 H 1.08999 * 109.46922 * 119.99584 * 2 1 3 33 33 H 1.09006 * 109.47177 * 60.00124 * 6 4 3 34 34 H 1.08996 * 109.47140 * 299.99685 * 6 4 3 35 35 H 1.08998 * 109.47795 * 30.00048 * 8 7 6 36 36 H 1.09010 * 109.46993 * 150.00102 * 8 7 6 37 37 H 0.96997 * 119.99563 * 179.97438 * 12 11 9 38 38 H 1.08002 * 120.51809 * 359.97438 * 18 17 7 39 39 H 1.08997 * 109.46697 * 180.02562 * 23 22 20 40 40 H 1.09000 * 109.46935 * 300.00083 * 23 22 20 41 41 H 1.08994 * 109.47157 * 60.00366 * 23 22 20 42 42 H 1.08006 * 119.52119 * 179.72029 * 26 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5866 0.0015 6 6 3.9207 2.9374 0.0000 7 7 5.3838 2.8606 0.0014 8 6 6.1141 2.8232 1.2707 9 6 6.4390 4.2292 1.7050 10 1 6.1317 5.0670 1.0964 11 6 7.1285 4.4462 2.8791 12 7 7.5022 3.4261 3.6204 13 14 7.5305 6.1891 3.4177 14 1 7.0020 7.1508 2.4171 15 1 6.9054 6.4558 4.7381 16 1 9.0032 6.3464 3.5265 17 6 6.0797 2.8233 -1.2033 18 6 7.4581 2.6455 -1.1947 19 6 8.1437 2.6161 -2.4112 20 6 9.6112 2.4359 -2.4519 21 8 10.1907 2.4123 -3.5190 22 8 10.3049 2.2980 -1.3057 23 6 11.7420 2.1256 -1.4216 24 6 7.4020 2.7568 -3.5932 25 9 8.0180 2.7302 -4.7953 26 6 6.0326 2.9298 -3.5111 27 7 5.4212 2.9579 -2.3431 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.5844 3.4701 0.8895 34 1 3.5853 3.4689 -0.8905 35 1 5.4984 2.3415 2.0302 36 1 7.0385 2.2601 1.1416 37 1 7.9875 3.5788 4.4462 38 1 7.9913 2.5369 -0.2618 39 1 12.1772 2.0261 -0.4273 40 1 11.9546 1.2280 -2.0024 41 1 12.1728 2.9927 -1.9221 42 1 5.4553 3.0435 -4.4169 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157159656.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:15:58 Heat of formation + Delta-G solvation = -176.673193 kcal Electronic energy + Delta-G solvation = -29876.010176 eV Core-core repulsion = 25350.260299 eV Total energy + Delta-G solvation = -4525.749877 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.131 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.87206 -41.93718 -41.49363 -40.82635 -38.12115 -37.64741 -37.09491 -34.79757 -34.00457 -32.74145 -31.34296 -30.37869 -28.91627 -27.66472 -25.96353 -25.21885 -24.15234 -23.35057 -22.47256 -21.46449 -19.44477 -19.02330 -18.80909 -18.51068 -18.24345 -17.98364 -17.66366 -17.64820 -17.07042 -16.99455 -16.63845 -16.37400 -15.74641 -15.55640 -15.16793 -15.05644 -14.63415 -14.56072 -14.45290 -14.21988 -14.16424 -13.63715 -13.53786 -13.32904 -13.22046 -13.04144 -12.88842 -12.70544 -12.56801 -12.47936 -12.12461 -12.03380 -12.01944 -11.91803 -11.53262 -11.50112 -11.16171 -10.83828 -10.73175 -10.58631 -8.63434 -8.13626 -6.35229 -0.69687 0.02305 1.21377 1.28316 1.42441 1.43066 1.46028 1.52396 1.58635 2.09481 2.42392 2.64139 2.97279 3.11002 3.28100 3.48036 3.72238 3.81552 3.87511 4.01482 4.12646 4.19507 4.23833 4.27788 4.34252 4.36174 4.48345 4.53717 4.63887 4.77447 4.84670 4.90738 4.95529 5.08467 5.16153 5.20316 5.36838 5.46854 5.63826 5.86701 6.01563 6.32847 6.43674 6.69225 6.79021 6.90301 7.36782 8.86427 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.006943 B = 0.004893 C = 0.003222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4031.627818 B = 5720.803424 C = 8689.194166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.052 3.948 3 O -0.358 6.358 4 C 0.448 3.552 5 O -0.537 6.537 6 C 0.138 3.862 7 N -0.574 5.574 8 C 0.270 3.730 9 C -0.543 4.543 10 H 0.064 0.936 11 C 0.021 3.979 12 N -0.922 5.922 13 Si 0.960 3.040 14 H -0.266 1.266 15 H -0.278 1.278 16 H -0.282 1.282 17 C 0.396 3.604 18 C -0.148 4.148 19 C -0.086 4.086 20 C 0.514 3.486 21 O -0.510 6.510 22 O -0.356 6.356 23 C 0.028 3.972 24 C 0.019 3.981 25 F -0.123 7.123 26 C 0.140 3.860 27 N -0.509 5.509 28 H 0.099 0.901 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.133 0.867 34 H 0.143 0.857 35 H 0.018 0.982 36 H 0.022 0.978 37 H 0.268 0.732 38 H 0.147 0.853 39 H 0.130 0.870 40 H 0.072 0.928 41 H 0.070 0.930 42 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.597 -2.677 -9.374 11.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.022 4.022 3 O -0.274 6.274 4 C 0.291 3.709 5 O -0.426 6.426 6 C 0.013 3.987 7 N -0.283 5.283 8 C 0.150 3.850 9 C -0.582 4.582 10 H 0.082 0.918 11 C -0.179 4.179 12 N -0.561 5.561 13 Si 0.785 3.215 14 H -0.190 1.190 15 H -0.204 1.204 16 H -0.208 1.208 17 C 0.161 3.839 18 C -0.174 4.174 19 C -0.095 4.095 20 C 0.359 3.641 21 O -0.400 6.400 22 O -0.272 6.272 23 C -0.064 4.064 24 C -0.006 4.006 25 F -0.101 7.101 26 C -0.020 4.020 27 N -0.227 5.227 28 H 0.118 0.882 29 H 0.088 0.912 30 H 0.092 0.908 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.150 0.850 34 H 0.160 0.840 35 H 0.036 0.964 36 H 0.039 0.961 37 H 0.077 0.923 38 H 0.165 0.835 39 H 0.148 0.852 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -7.057 -2.946 -9.284 12.028 hybrid contribution 1.886 0.151 0.487 1.954 sum -5.170 -2.795 -8.797 10.580 Atomic orbital electron populations 1.21805 0.89826 1.04353 1.03918 1.23260 0.97418 0.79511 1.01988 1.86503 1.23562 1.33523 1.83801 1.25024 0.80808 0.93930 0.71170 1.90638 1.61336 1.44162 1.46508 1.20994 0.79948 0.89582 1.08182 1.46608 1.04242 1.74190 1.03240 1.19046 0.91332 0.96418 0.78195 1.21733 1.36790 0.92824 1.06805 0.91794 1.25683 0.95133 1.00867 0.96253 1.70045 1.39205 1.32133 1.14732 0.85480 0.77834 0.79947 0.78252 1.19011 1.20369 1.20780 1.18363 0.88159 0.90703 0.86636 1.21743 0.93929 1.03422 0.98270 1.19419 0.90531 1.05771 0.93812 1.20906 0.87988 0.72956 0.82265 1.90830 1.71183 1.46784 1.31206 1.86630 1.24947 1.82180 1.33410 1.23675 0.74020 1.02791 1.05929 1.18464 0.92437 1.10016 0.79649 1.91523 1.83121 1.94135 1.41349 1.23044 0.88774 0.93624 0.96575 1.67110 1.39462 1.19063 0.97027 0.88235 0.91196 0.90845 0.91768 0.92196 0.84977 0.83964 0.96362 0.96057 0.92339 0.83514 0.85213 0.90965 0.91109 0.76733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 10.29 71.98 0.74 -1.39 16 2 C 0.05 1.21 6.19 71.98 0.45 1.65 16 3 O -0.36 -10.16 10.22 -51.40 -0.53 -10.69 16 4 C 0.45 15.33 8.03 71.24 0.57 15.90 16 5 O -0.54 -22.24 16.18 21.98 0.36 -21.88 16 6 C 0.14 4.53 6.06 85.63 0.52 5.05 16 7 N -0.57 -23.01 2.06 -712.62 -1.47 -24.48 16 8 C 0.27 12.92 5.00 85.63 0.43 13.35 16 9 C -0.54 -27.30 9.39 25.60 0.24 -27.06 16 10 H 0.06 3.18 7.81 -2.91 -0.02 3.16 16 11 C 0.02 1.08 5.46 84.66 0.46 1.55 16 12 N -0.92 -50.64 13.29 21.45 0.28 -50.36 16 13 Si 0.96 40.93 29.54 68.60 2.03 42.95 16 14 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 15 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16 16 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 17 C 0.40 15.24 7.37 132.99 0.98 16.22 16 18 C -0.15 -5.82 8.86 22.80 0.20 -5.62 16 19 C -0.09 -3.11 5.91 -19.88 -0.12 -3.23 16 20 C 0.51 18.56 7.92 70.38 0.56 19.12 16 21 O -0.51 -19.31 15.27 20.00 0.31 -19.01 16 22 O -0.36 -12.00 9.91 -55.90 -0.55 -12.55 16 23 C 0.03 0.68 10.56 113.37 1.20 1.87 16 24 C 0.02 0.62 7.33 22.77 0.17 0.78 16 25 F -0.12 -3.97 15.71 44.97 0.71 -3.27 16 26 C 0.14 3.87 11.16 84.69 0.94 4.81 16 27 N -0.51 -16.69 9.04 -193.17 -1.75 -18.43 16 28 H 0.10 1.05 8.14 -2.38 -0.02 1.03 16 29 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.06 1.51 8.13 -2.39 -0.02 1.49 16 32 H 0.06 1.48 8.13 -2.39 -0.02 1.46 16 33 H 0.13 4.02 8.07 -2.38 -0.02 4.00 16 34 H 0.14 3.98 7.30 -2.39 -0.02 3.97 16 35 H 0.02 0.95 8.07 -2.39 -0.02 0.93 16 36 H 0.02 1.11 5.97 -2.38 -0.01 1.10 16 37 H 0.27 13.90 8.31 -92.71 -0.77 13.13 16 38 H 0.15 6.36 5.67 -2.91 -0.02 6.35 16 39 H 0.13 2.39 8.14 -2.39 -0.02 2.37 16 40 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.22 3.89 8.06 -2.91 -0.02 3.86 16 Total: -1.00 -66.97 376.43 7.78 -59.19 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: 1.06 Total: 15.52 kcal Atomic # 6 Polarization: 35.67 SS G_CDS: 7.34 Total: 43.01 kcal Atomic # 7 Polarization: -90.34 SS G_CDS: -2.93 Total: -93.27 kcal Atomic # 8 Polarization: -63.71 SS G_CDS: -0.42 Total: -64.13 kcal Atomic # 9 Polarization: -3.97 SS G_CDS: 0.71 Total: -3.27 kcal Atomic # 14 Polarization: 40.93 SS G_CDS: 2.03 Total: 42.95 kcal Total: -66.97 7.78 -59.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157159656.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.487 kcal (2) G-P(sol) polarization free energy of solvation -66.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds