Wall clock time and date at job start Tue Mar 31 2020 23:16:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45204 * 109.46664 * 2 1 4 4 C 1.34231 * 116.99735 * 180.02562 * 3 2 1 5 5 O 1.20826 * 120.00343 * 359.97438 * 4 3 2 6 6 C 1.50707 * 119.99563 * 180.02562 * 4 3 2 7 7 N 1.46895 * 109.46593 * 179.97438 * 6 4 3 8 8 C 1.46903 * 111.00573 * 72.44255 * 7 6 4 9 9 C 1.50699 * 109.47752 * 193.95364 * 8 7 6 10 10 H 1.07998 * 119.99316 * 359.97438 * 9 8 7 11 11 C 1.37870 * 119.99943 * 179.97438 * 9 8 7 12 12 N 1.31513 * 120.00362 * 359.97438 * 11 9 8 13 13 Si 1.86807 * 119.99749 * 180.02562 * 11 9 8 14 14 H 1.48492 * 109.47115 * 359.97438 * 13 11 9 15 15 H 1.48497 * 109.47271 * 120.00166 * 13 11 9 16 16 H 1.48508 * 109.46746 * 239.99661 * 13 11 9 17 17 C 1.38613 * 111.00000 * 196.39542 * 7 6 4 18 18 N 1.33148 * 120.49413 * 293.96812 * 17 7 6 19 19 C 1.31722 * 120.83547 * 180.27479 * 18 17 7 20 20 N 1.31778 * 121.88870 * 359.97438 * 19 18 17 21 21 C 1.32999 * 120.91217 * 0.02562 * 20 19 18 22 22 O 1.35543 * 120.46542 * 180.02562 * 21 20 19 23 23 C 1.42902 * 117.00193 * 359.97438 * 22 21 20 24 24 C 1.38917 * 119.06894 * 0.02562 * 21 20 19 25 25 N 1.48026 * 120.85625 * 180.02562 * 24 21 20 26 26 O 1.21798 * 120.00252 * 275.07374 * 25 24 21 27 27 O 1.21808 * 119.99821 * 95.07352 * 25 24 21 28 28 H 1.09001 * 109.46715 * 179.97438 * 1 2 3 29 29 H 1.08990 * 109.47136 * 299.99369 * 1 2 3 30 30 H 1.09001 * 109.47551 * 60.00403 * 1 2 3 31 31 H 1.09000 * 109.47125 * 240.00626 * 2 1 3 32 32 H 1.08997 * 109.47788 * 120.00058 * 2 1 3 33 33 H 1.08993 * 109.47051 * 59.99677 * 6 4 3 34 34 H 1.08998 * 109.47066 * 299.99413 * 6 4 3 35 35 H 1.09010 * 109.46551 * 313.95393 * 8 7 6 36 36 H 1.08994 * 109.46873 * 73.94577 * 8 7 6 37 37 H 0.96997 * 120.00043 * 180.02562 * 12 11 9 38 38 H 1.08004 * 119.05690 * 179.97438 * 19 18 17 39 39 H 1.09006 * 109.46804 * 59.99819 * 23 22 21 40 40 H 1.08993 * 109.47219 * 179.97438 * 23 22 21 41 41 H 1.09001 * 109.47396 * 300.00263 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5450 -0.0005 5 8 4.0808 0.5868 -0.0005 6 6 3.9205 2.9377 0.0000 7 7 5.3875 2.8608 -0.0001 8 6 5.8916 2.4207 -1.3079 9 6 7.3402 2.0252 -1.1808 10 1 7.8368 2.0944 -0.2243 11 6 8.0314 1.5752 -2.2856 12 7 7.4265 1.4905 -3.4502 13 14 9.8269 1.0844 -2.1278 14 1 10.2692 1.2702 -0.7226 15 1 9.9862 -0.3409 -2.5131 16 1 10.6528 1.9343 -3.0228 17 6 5.9485 4.0744 0.3656 18 7 5.8113 5.1447 -0.4145 19 6 6.3462 6.2999 -0.0761 20 7 7.0340 6.4488 1.0380 21 6 7.2158 5.4276 1.8704 22 8 7.9245 5.5911 3.0142 23 6 8.4537 6.8939 3.2690 24 6 6.6694 4.1910 1.5511 25 7 6.8469 3.0278 2.4492 26 8 7.8515 2.3437 2.3684 27 8 5.9884 2.7546 3.2690 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5137 -0.8900 32 1 1.8935 -0.5138 0.8899 33 1 3.5849 3.4692 0.8904 34 1 3.5842 3.4702 -0.8895 35 1 5.3103 1.5652 -1.6521 36 1 5.7990 3.2354 -2.0259 37 1 7.9127 1.1736 -4.2274 38 1 6.2173 7.1493 -0.7305 39 1 7.6367 7.6133 3.3251 40 1 8.9969 6.8870 4.2139 41 1 9.1306 7.1752 2.4623 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157159679.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:16:02 Heat of formation + Delta-G solvation = -46.405753 kcal Electronic energy + Delta-G solvation = -30982.328900 eV Core-core repulsion = 26482.147804 eV Total energy + Delta-G solvation = -4500.181096 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.131 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.10337 -40.93971 -40.18799 -39.13385 -37.32430 -35.96494 -35.89946 -32.98826 -32.67672 -32.27738 -31.64350 -28.66512 -27.99378 -26.95130 -26.01031 -23.88176 -23.22124 -23.08990 -21.81494 -20.61911 -19.07585 -18.98801 -18.46923 -18.25649 -17.50511 -16.72447 -16.58855 -16.35022 -16.21253 -16.03746 -15.49132 -15.22114 -14.98174 -14.45088 -14.24464 -14.12950 -13.62233 -13.19258 -12.79778 -12.65290 -12.55491 -12.18360 -12.09079 -11.99666 -11.84664 -11.51429 -11.37975 -11.11740 -10.83002 -10.75927 -10.54429 -10.53735 -10.38666 -10.32719 -10.11926 -10.04640 -9.77449 -9.64897 -9.43681 -8.63323 -8.25256 -6.13461 -4.15218 0.37271 0.74418 1.09941 1.75491 2.30086 2.60724 2.72312 3.29662 3.32678 3.38196 3.48105 3.54280 3.82818 4.06681 4.40946 4.61325 4.75393 4.88105 4.95045 4.96869 4.99226 5.05755 5.17743 5.25275 5.26418 5.33137 5.41051 5.56469 5.71217 5.78071 5.93096 6.38183 6.46496 6.55390 6.67587 6.78678 6.90149 7.37061 7.55265 7.69497 7.88393 8.10073 8.15994 8.20085 8.89945 9.49418 10.97084 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.008021 B = 0.005419 C = 0.003950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3489.935214 B = 5165.946748 C = 7086.114818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.062 3.938 3 O -0.366 6.366 4 C 0.460 3.540 5 O -0.461 6.461 6 C 0.074 3.926 7 N -0.491 5.491 8 C 0.195 3.805 9 C -0.517 4.517 10 H 0.068 0.932 11 C 0.065 3.935 12 N -0.893 5.893 13 Si 0.896 3.104 14 H -0.264 1.264 15 H -0.280 1.280 16 H -0.285 1.285 17 C 0.471 3.529 18 N -0.543 5.543 19 C 0.375 3.625 20 N -0.571 5.571 21 C 0.414 3.586 22 O -0.296 6.296 23 C 0.038 3.962 24 C -0.137 4.137 25 N 0.054 4.946 26 O -0.113 6.113 27 O -0.151 6.151 28 H 0.077 0.923 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.106 0.894 34 H 0.094 0.906 35 H 0.056 0.944 36 H 0.023 0.977 37 H 0.263 0.737 38 H 0.216 0.784 39 H 0.068 0.932 40 H 0.106 0.894 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.521 10.199 8.563 15.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.012 4.012 3 O -0.284 6.284 4 C 0.299 3.701 5 O -0.344 6.344 6 C -0.054 4.054 7 N -0.217 5.217 8 C 0.074 3.926 9 C -0.555 4.555 10 H 0.086 0.914 11 C -0.138 4.138 12 N -0.531 5.531 13 Si 0.723 3.277 14 H -0.188 1.188 15 H -0.206 1.206 16 H -0.211 1.211 17 C 0.236 3.764 18 N -0.266 5.266 19 C 0.087 3.913 20 N -0.303 5.303 21 C 0.226 3.774 22 O -0.199 6.199 23 C -0.057 4.057 24 C -0.226 4.226 25 N 0.586 4.414 26 O -0.342 6.342 27 O -0.370 6.370 28 H 0.096 0.904 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.124 0.876 34 H 0.112 0.888 35 H 0.074 0.926 36 H 0.041 0.959 37 H 0.073 0.927 38 H 0.232 0.768 39 H 0.086 0.914 40 H 0.124 0.876 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.300 10.611 7.943 15.639 hybrid contribution 1.089 -0.636 -0.076 1.264 sum -7.211 9.974 7.867 14.608 Atomic orbital electron populations 1.21788 0.92893 1.02727 1.03295 1.22975 0.94937 0.80402 1.02838 1.86432 1.24616 1.32330 1.85015 1.23143 0.80501 0.92382 0.74073 1.90783 1.59720 1.42139 1.41776 1.21394 0.87257 0.91915 1.04831 1.60112 1.04263 1.18130 1.39212 1.20220 0.97204 0.96463 0.78741 1.21122 0.94177 1.44303 0.95911 0.91406 1.24879 0.98908 0.95117 0.94883 1.69951 1.36867 1.46477 0.99841 0.86428 0.84116 0.78362 0.78761 1.18847 1.20606 1.21094 1.19475 0.84190 0.89200 0.83580 1.69036 1.25573 0.99881 1.32077 1.24936 0.83405 0.94626 0.88331 1.68440 1.23665 1.30454 1.07785 1.19347 0.85232 0.86972 0.85836 1.86318 1.63692 1.35945 1.33947 1.23107 0.99170 0.80688 1.02687 1.21588 1.15057 0.87389 0.98572 1.42508 0.99860 1.00019 0.99002 1.94586 1.18795 1.46816 1.74008 1.94476 1.37517 1.74518 1.30500 0.90423 0.91623 0.91589 0.91148 0.91199 0.87628 0.88788 0.92626 0.95938 0.92724 0.76816 0.91361 0.87579 0.91187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 10.29 37.16 0.38 -1.00 16 2 C 0.06 0.82 6.19 37.16 0.23 1.05 16 3 O -0.37 -5.73 10.22 -39.26 -0.40 -6.13 16 4 C 0.46 8.67 7.56 36.01 0.27 8.94 16 5 O -0.46 -10.62 14.75 -18.75 -0.28 -10.90 16 6 C 0.07 1.30 5.43 -4.97 -0.03 1.28 16 7 N -0.49 -10.77 3.86 -175.81 -0.68 -11.45 16 8 C 0.19 5.04 4.26 -4.97 -0.02 5.02 16 9 C -0.52 -14.87 8.80 -34.44 -0.30 -15.18 16 10 H 0.07 2.02 7.26 -52.49 -0.38 1.64 16 11 C 0.06 1.87 5.46 -17.82 -0.10 1.77 16 12 N -0.89 -26.44 13.29 55.43 0.74 -25.70 16 13 Si 0.90 22.47 29.54 -169.99 -5.02 17.45 16 14 H -0.26 -6.67 7.11 56.52 0.40 -6.27 16 15 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 16 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 17 C 0.47 9.43 4.63 -154.72 -0.72 8.71 16 18 N -0.54 -9.43 9.65 -13.87 -0.13 -9.56 16 19 C 0.38 5.08 12.28 -92.23 -1.13 3.95 16 20 N -0.57 -8.11 9.38 -14.72 -0.14 -8.24 16 21 C 0.41 6.91 7.52 -16.79 -0.13 6.78 16 22 O -0.30 -4.45 10.30 -18.32 -0.19 -4.64 16 23 C 0.04 0.37 10.41 101.05 1.05 1.42 16 24 C -0.14 -2.70 6.26 -79.32 -0.50 -3.20 16 25 N 0.05 1.17 3.95 34.27 0.14 1.30 16 26 O -0.11 -2.66 18.77 -29.46 -0.55 -3.21 16 27 O -0.15 -3.17 19.26 -29.46 -0.57 -3.74 16 28 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.96 8.13 -51.93 -0.42 0.54 16 32 H 0.07 0.92 8.13 -51.93 -0.42 0.50 16 33 H 0.11 1.58 7.96 -51.93 -0.41 1.17 16 34 H 0.09 1.51 8.05 -51.93 -0.42 1.09 16 35 H 0.06 1.57 6.42 -51.92 -0.33 1.24 16 36 H 0.02 0.61 7.54 -51.93 -0.39 0.21 16 37 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 38 H 0.22 1.82 8.06 -52.48 -0.42 1.39 16 39 H 0.07 0.57 8.12 -51.93 -0.42 0.15 16 40 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.07 0.65 8.12 -51.93 -0.42 0.23 16 LS Contribution 372.02 15.07 5.61 5.61 Total: -1.00 -35.72 372.02 -7.34 -43.06 By element: Atomic # 1 Polarization: 1.48 SS G_CDS: -4.87 Total: -3.39 kcal Atomic # 6 Polarization: 20.52 SS G_CDS: -0.98 Total: 19.53 kcal Atomic # 7 Polarization: -53.57 SS G_CDS: -0.08 Total: -53.65 kcal Atomic # 8 Polarization: -26.63 SS G_CDS: -1.99 Total: -28.61 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -35.72 -7.34 -43.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157159679.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.343 kcal (2) G-P(sol) polarization free energy of solvation -35.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds