Wall clock time and date at job start Tue Mar 31 2020 23:16:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45204 * 109.46664 * 2 1 4 4 C 1.34231 * 116.99735 * 180.02562 * 3 2 1 5 5 O 1.20826 * 120.00343 * 359.97438 * 4 3 2 6 6 C 1.50707 * 119.99563 * 180.02562 * 4 3 2 7 7 N 1.46895 * 109.46593 * 179.97438 * 6 4 3 8 8 C 1.46903 * 111.00573 * 72.44255 * 7 6 4 9 9 C 1.50699 * 109.47752 * 193.95364 * 8 7 6 10 10 H 1.07998 * 119.99316 * 359.97438 * 9 8 7 11 11 C 1.37870 * 119.99943 * 179.97438 * 9 8 7 12 12 N 1.31513 * 120.00362 * 359.97438 * 11 9 8 13 13 Si 1.86807 * 119.99749 * 180.02562 * 11 9 8 14 14 H 1.48492 * 109.47115 * 359.97438 * 13 11 9 15 15 H 1.48497 * 109.47271 * 120.00166 * 13 11 9 16 16 H 1.48508 * 109.46746 * 239.99661 * 13 11 9 17 17 C 1.38613 * 111.00000 * 196.39542 * 7 6 4 18 18 N 1.33148 * 120.49413 * 293.96812 * 17 7 6 19 19 C 1.31722 * 120.83547 * 180.27479 * 18 17 7 20 20 N 1.31778 * 121.88870 * 359.97438 * 19 18 17 21 21 C 1.32999 * 120.91217 * 0.02562 * 20 19 18 22 22 O 1.35543 * 120.46542 * 180.02562 * 21 20 19 23 23 C 1.42902 * 117.00193 * 359.97438 * 22 21 20 24 24 C 1.38917 * 119.06894 * 0.02562 * 21 20 19 25 25 N 1.48026 * 120.85625 * 180.02562 * 24 21 20 26 26 O 1.21798 * 120.00252 * 275.07374 * 25 24 21 27 27 O 1.21808 * 119.99821 * 95.07352 * 25 24 21 28 28 H 1.09001 * 109.46715 * 179.97438 * 1 2 3 29 29 H 1.08990 * 109.47136 * 299.99369 * 1 2 3 30 30 H 1.09001 * 109.47551 * 60.00403 * 1 2 3 31 31 H 1.09000 * 109.47125 * 240.00626 * 2 1 3 32 32 H 1.08997 * 109.47788 * 120.00058 * 2 1 3 33 33 H 1.08993 * 109.47051 * 59.99677 * 6 4 3 34 34 H 1.08998 * 109.47066 * 299.99413 * 6 4 3 35 35 H 1.09010 * 109.46551 * 313.95393 * 8 7 6 36 36 H 1.08994 * 109.46873 * 73.94577 * 8 7 6 37 37 H 0.96997 * 120.00043 * 180.02562 * 12 11 9 38 38 H 1.08004 * 119.05690 * 179.97438 * 19 18 17 39 39 H 1.09006 * 109.46804 * 59.99819 * 23 22 21 40 40 H 1.08993 * 109.47219 * 179.97438 * 23 22 21 41 41 H 1.09001 * 109.47396 * 300.00263 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5450 -0.0005 5 8 4.0808 0.5868 -0.0005 6 6 3.9205 2.9377 0.0000 7 7 5.3875 2.8608 -0.0001 8 6 5.8916 2.4207 -1.3079 9 6 7.3402 2.0252 -1.1808 10 1 7.8368 2.0944 -0.2243 11 6 8.0314 1.5752 -2.2856 12 7 7.4265 1.4905 -3.4502 13 14 9.8269 1.0844 -2.1278 14 1 10.2692 1.2702 -0.7226 15 1 9.9862 -0.3409 -2.5131 16 1 10.6528 1.9343 -3.0228 17 6 5.9485 4.0744 0.3656 18 7 5.8113 5.1447 -0.4145 19 6 6.3462 6.2999 -0.0761 20 7 7.0340 6.4488 1.0380 21 6 7.2158 5.4276 1.8704 22 8 7.9245 5.5911 3.0142 23 6 8.4537 6.8939 3.2690 24 6 6.6694 4.1910 1.5511 25 7 6.8469 3.0278 2.4492 26 8 7.8515 2.3437 2.3684 27 8 5.9884 2.7546 3.2690 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5137 -0.8900 32 1 1.8935 -0.5138 0.8899 33 1 3.5849 3.4692 0.8904 34 1 3.5842 3.4702 -0.8895 35 1 5.3103 1.5652 -1.6521 36 1 5.7990 3.2354 -2.0259 37 1 7.9127 1.1736 -4.2274 38 1 6.2173 7.1493 -0.7305 39 1 7.6367 7.6133 3.3251 40 1 8.9969 6.8870 4.2139 41 1 9.1306 7.1752 2.4623 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157159679.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:16:01 Heat of formation + Delta-G solvation = -71.394263 kcal Electronic energy + Delta-G solvation = -30983.412483 eV Core-core repulsion = 26482.147804 eV Total energy + Delta-G solvation = -4501.264679 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.131 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.56645 -42.43276 -41.62348 -40.36664 -38.74258 -37.58337 -37.44225 -34.99847 -34.03521 -33.72374 -32.69221 -30.38175 -29.07379 -28.50959 -27.48775 -25.48925 -24.66330 -24.35447 -23.28212 -22.02127 -20.64243 -20.26062 -19.93117 -19.86523 -18.92230 -18.61586 -17.89939 -17.77169 -17.70288 -17.45501 -16.92444 -16.74343 -16.34691 -15.96867 -15.54668 -15.30847 -15.06069 -14.69362 -14.24553 -13.92557 -13.80393 -13.60664 -13.51595 -13.04028 -12.98102 -12.90165 -12.81445 -12.76985 -12.64404 -12.51018 -12.36041 -12.18677 -12.13794 -11.70584 -11.67016 -11.53435 -11.41636 -11.10194 -10.92739 -10.74057 -10.01987 -8.33228 -6.41697 -0.95938 -0.61900 -0.55022 0.23352 1.08412 1.12830 1.29542 1.33458 1.44370 1.48927 2.04498 2.20260 2.33677 2.69160 2.77888 3.01788 3.25315 3.33962 3.64738 3.83788 4.00172 4.05735 4.10059 4.23469 4.28169 4.35205 4.46899 4.62818 4.70988 4.84017 4.91799 4.93926 5.04792 5.12150 5.16933 5.33113 5.41505 5.51600 5.72617 5.75213 6.04010 6.43745 6.44903 6.67520 6.73616 7.26791 8.77782 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.008021 B = 0.005419 C = 0.003950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3489.935214 B = 5165.946748 C = 7086.114818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.051 3.949 3 O -0.355 6.355 4 C 0.463 3.537 5 O -0.513 6.513 6 C 0.072 3.928 7 N -0.511 5.511 8 C 0.221 3.779 9 C -0.532 4.532 10 H 0.049 0.951 11 C 0.020 3.980 12 N -0.920 5.920 13 Si 0.953 3.047 14 H -0.273 1.273 15 H -0.274 1.274 16 H -0.268 1.268 17 C 0.461 3.539 18 N -0.556 5.556 19 C 0.388 3.612 20 N -0.551 5.551 21 C 0.422 3.578 22 O -0.310 6.310 23 C 0.028 3.972 24 C -0.165 4.165 25 N 0.057 4.943 26 O -0.179 6.179 27 O -0.124 6.124 28 H 0.101 0.899 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.059 0.941 32 H 0.066 0.934 33 H 0.137 0.863 34 H 0.113 0.887 35 H 0.025 0.975 36 H 0.011 0.989 37 H 0.268 0.732 38 H 0.271 0.729 39 H 0.085 0.915 40 H 0.134 0.866 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.186 12.718 8.960 18.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.022 4.022 3 O -0.272 6.272 4 C 0.305 3.695 5 O -0.400 6.400 6 C -0.054 4.054 7 N -0.237 5.237 8 C 0.098 3.902 9 C -0.570 4.570 10 H 0.068 0.932 11 C -0.180 4.180 12 N -0.559 5.559 13 Si 0.777 3.223 14 H -0.197 1.197 15 H -0.200 1.200 16 H -0.193 1.193 17 C 0.224 3.776 18 N -0.279 5.279 19 C 0.102 3.898 20 N -0.283 5.283 21 C 0.233 3.767 22 O -0.213 6.213 23 C -0.065 4.065 24 C -0.255 4.255 25 N 0.586 4.414 26 O -0.393 6.393 27 O -0.355 6.355 28 H 0.119 0.881 29 H 0.093 0.907 30 H 0.089 0.911 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.154 0.846 34 H 0.130 0.870 35 H 0.043 0.957 36 H 0.029 0.971 37 H 0.077 0.923 38 H 0.286 0.714 39 H 0.103 0.897 40 H 0.152 0.848 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -8.867 13.141 8.312 17.900 hybrid contribution 1.137 -1.253 -0.083 1.694 sum -7.731 11.887 8.229 16.395 Atomic orbital electron populations 1.21805 0.89342 1.04527 1.03998 1.23332 0.97616 0.79020 1.02227 1.86441 1.22694 1.33959 1.84141 1.23452 0.81146 0.92321 0.72576 1.90763 1.61064 1.43715 1.44445 1.21581 0.85082 0.91694 1.07073 1.59763 1.06583 1.20361 1.36972 1.19620 0.95300 0.94734 0.80503 1.21305 0.95844 1.44691 0.95186 0.93236 1.25623 1.02708 0.95048 0.94649 1.70025 1.38332 1.47205 1.00388 0.85569 0.79821 0.78494 0.78367 1.19735 1.19979 1.19257 1.19388 0.84700 0.89371 0.84096 1.69071 1.26774 1.00318 1.31783 1.26077 0.80933 0.94635 0.88153 1.68655 1.23304 1.28802 1.07555 1.19457 0.84517 0.86227 0.86515 1.86330 1.63034 1.38926 1.33023 1.23549 0.99963 0.78744 1.04244 1.21768 1.17343 0.87415 0.98976 1.42800 0.99279 1.00361 0.98974 1.94587 1.20042 1.48872 1.75776 1.94414 1.36788 1.74168 1.30135 0.88057 0.90675 0.91065 0.92241 0.91547 0.84575 0.86950 0.95705 0.97149 0.92307 0.71421 0.89675 0.84778 0.90699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.33 10.29 71.98 0.74 -1.59 16 2 C 0.05 1.35 6.19 71.98 0.45 1.79 16 3 O -0.36 -11.04 10.22 -51.43 -0.53 -11.57 16 4 C 0.46 17.85 7.56 71.24 0.54 18.38 16 5 O -0.51 -24.77 14.75 21.96 0.32 -24.45 16 6 C 0.07 2.55 5.43 85.56 0.46 3.01 16 7 N -0.51 -22.86 3.86 -710.15 -2.74 -25.61 16 8 C 0.22 11.85 4.26 85.56 0.36 12.22 16 9 C -0.53 -31.68 8.80 25.60 0.23 -31.45 16 10 H 0.05 3.09 7.26 -2.91 -0.02 3.07 16 11 C 0.02 1.15 5.46 84.65 0.46 1.61 16 12 N -0.92 -55.45 13.29 21.44 0.28 -55.17 16 13 Si 0.95 46.95 29.54 68.60 2.03 48.98 16 14 H -0.27 -13.68 7.11 99.48 0.71 -12.98 16 15 H -0.27 -13.17 7.11 99.48 0.71 -12.46 16 16 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 17 C 0.46 18.33 4.63 133.00 0.62 18.95 16 18 N -0.56 -18.39 9.65 -197.79 -1.91 -20.30 16 19 C 0.39 9.22 12.28 180.91 2.22 11.44 16 20 N -0.55 -13.98 9.38 -313.06 -2.94 -16.92 16 21 C 0.42 13.44 7.52 84.68 0.64 14.07 16 22 O -0.31 -8.84 10.30 -88.49 -0.91 -9.75 16 23 C 0.03 0.46 10.41 113.37 1.18 1.64 16 24 C -0.17 -6.52 6.26 36.78 0.23 -6.29 16 25 N 0.06 2.52 3.95 -45.50 -0.18 2.34 16 26 O -0.18 -8.85 18.77 18.89 0.35 -8.50 16 27 O -0.12 -5.27 19.26 18.88 0.36 -4.90 16 28 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.06 1.68 8.13 -2.39 -0.02 1.66 16 32 H 0.07 1.78 8.13 -2.39 -0.02 1.76 16 33 H 0.14 3.91 7.96 -2.39 -0.02 3.89 16 34 H 0.11 3.54 8.05 -2.39 -0.02 3.52 16 35 H 0.02 1.48 6.42 -2.38 -0.02 1.46 16 36 H 0.01 0.59 7.54 -2.39 -0.02 0.57 16 37 H 0.27 15.12 8.31 -92.71 -0.77 14.34 16 38 H 0.27 3.14 8.06 -2.91 -0.02 3.12 16 39 H 0.08 1.14 8.12 -2.38 -0.02 1.12 16 40 H 0.13 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.07 1.18 8.12 -2.39 -0.02 1.16 16 Total: -1.00 -81.95 372.02 3.35 -78.59 By element: Atomic # 1 Polarization: 2.38 SS G_CDS: 1.08 Total: 3.46 kcal Atomic # 6 Polarization: 35.67 SS G_CDS: 8.12 Total: 43.79 kcal Atomic # 7 Polarization: -108.17 SS G_CDS: -7.48 Total: -115.65 kcal Atomic # 8 Polarization: -58.78 SS G_CDS: -0.40 Total: -59.18 kcal Atomic # 14 Polarization: 46.95 SS G_CDS: 2.03 Total: 48.98 kcal Total: -81.95 3.35 -78.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157159679.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.200 kcal (2) G-P(sol) polarization free energy of solvation -81.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds