Wall clock time and date at job start Tue Mar 31 2020 23:42:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34671 * 117.00425 * 2 1 4 4 O 1.21433 * 119.99584 * 0.02562 * 3 2 1 5 5 C 1.48043 * 120.00142 * 179.97438 * 3 2 1 6 6 C 1.39878 * 120.93215 * 359.97438 * 5 3 2 7 7 C 1.38125 * 119.00234 * 179.97438 * 6 5 3 8 8 N 1.31817 * 120.89853 * 359.97438 * 7 6 5 9 9 C 1.31794 * 122.06616 * 0.02562 * 8 7 6 10 10 C 1.50698 * 119.55059 * 179.97438 * 9 8 7 11 11 N 1.46496 * 109.47372 * 274.99874 * 10 9 8 12 12 C 1.34774 * 119.99939 * 179.97438 * 11 10 9 13 13 O 1.21548 * 120.00166 * 359.73307 * 12 11 10 14 14 C 1.47894 * 120.00182 * 180.02562 * 12 11 10 15 15 C 1.39923 * 120.01903 * 359.45080 * 14 12 11 16 16 C 1.38328 * 120.35145 * 179.71622 * 15 14 12 17 17 C 1.37750 * 120.41404 * 0.56160 * 16 15 14 18 18 C 1.40748 * 120.04046 * 359.71829 * 17 16 15 19 19 C 1.41434 * 120.17861 * 180.02562 * 18 17 16 20 20 H 1.08004 * 120.00020 * 334.93685 * 19 18 17 21 21 C 1.39931 * 119.99977 * 154.92624 * 19 18 17 22 22 N 1.30826 * 120.00295 * 342.59792 * 21 19 18 23 23 Si 1.86805 * 120.00173 * 162.59603 * 21 19 18 24 24 H 1.48496 * 109.47063 * 59.99937 * 23 21 19 25 25 H 1.48498 * 109.47262 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47098 * 299.99983 * 23 21 19 27 27 C 1.38992 * 120.02845 * 179.72916 * 14 12 11 28 28 C 1.38174 * 120.89790 * 0.27714 * 9 8 7 29 29 H 1.08996 * 109.47268 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46653 * 299.99938 * 1 2 3 31 31 H 1.09000 * 109.46909 * 59.99810 * 1 2 3 32 32 H 1.08006 * 120.49588 * 359.97438 * 6 5 3 33 33 H 1.08001 * 119.54545 * 179.97438 * 7 6 5 34 34 H 1.09009 * 109.46481 * 155.00117 * 10 9 8 35 35 H 1.08995 * 109.47249 * 35.00608 * 10 9 8 36 36 H 0.96999 * 120.00221 * 0.02562 * 11 10 9 37 37 H 1.07994 * 119.82400 * 359.97438 * 15 14 12 38 38 H 1.08009 * 119.79140 * 180.28383 * 16 15 14 39 39 H 1.08002 * 119.97540 * 179.69605 * 17 16 15 40 40 H 0.97004 * 120.00829 * 180.02562 * 22 21 19 41 41 H 1.07998 * 120.20191 * 359.97334 * 27 14 12 42 42 H 1.07994 * 120.50252 * 179.72103 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.1999 0.0000 4 8 1.4021 2.2183 0.0005 5 6 3.5419 1.2773 0.0006 6 6 4.3226 0.1167 0.0017 7 6 5.6988 0.2353 0.0016 8 7 6.2760 1.4204 0.0001 9 6 5.5784 2.5385 -0.0010 10 6 6.2971 3.8630 -0.0021 11 7 6.6358 4.2361 1.3734 12 6 7.2870 5.3905 1.6176 13 8 7.5978 6.1197 0.6962 14 6 7.6294 5.7669 3.0063 15 6 7.2672 4.9305 4.0679 16 6 7.5891 5.2730 5.3689 17 6 8.2595 6.4464 5.6355 18 6 8.6269 7.3033 4.5811 19 6 9.3157 8.5086 4.8515 20 1 9.2169 8.9821 5.8172 21 6 10.1255 9.0874 3.8680 22 7 10.5226 8.3752 2.8450 23 14 10.6396 10.8773 4.0158 24 1 11.4079 11.0695 5.2719 25 1 11.4884 11.2460 2.8544 26 1 9.4306 11.7393 4.0381 27 6 8.3061 6.9546 3.2583 28 6 4.1969 2.5129 0.0052 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 3.8564 -0.8576 0.0025 33 1 6.3101 -0.6550 0.0029 34 1 5.6517 4.6262 -0.4372 35 1 7.2103 3.7804 -0.5915 36 1 6.3919 3.6520 2.1084 37 1 6.7372 4.0106 3.8701 38 1 7.3091 4.6184 6.1811 39 1 8.5029 6.7093 6.6544 40 1 11.0843 8.7763 2.1634 41 1 8.5840 7.6052 2.4423 42 1 3.6316 3.4330 0.0088 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188682224.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:42:07 Heat of formation + Delta-G solvation = -62.928958 kcal Electronic energy + Delta-G solvation = -27264.292559 eV Core-core repulsion = 23174.244226 eV Total energy + Delta-G solvation = -4090.048332 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.29298 -40.20639 -39.07670 -37.02806 -36.96191 -34.81308 -33.72494 -33.21684 -31.85880 -30.10493 -29.42799 -28.44475 -26.94022 -25.27852 -24.98219 -23.30909 -22.23997 -21.21423 -20.87572 -19.61867 -18.52339 -17.86012 -17.56551 -16.87531 -16.55787 -16.29134 -16.11504 -15.65841 -15.26374 -14.97377 -14.60769 -14.47540 -14.30208 -14.04896 -13.77100 -13.61777 -13.24246 -13.13893 -12.65611 -12.61164 -12.47734 -12.47327 -12.02196 -11.62961 -11.31801 -11.24383 -11.14491 -11.07052 -10.73953 -10.49834 -10.42954 -10.04673 -9.95231 -9.69000 -9.63524 -9.19977 -8.99299 -8.73060 -7.62452 -7.51024 -6.78375 -4.40320 0.09909 0.58242 2.06159 2.07498 2.20985 2.83264 3.08851 3.10574 3.17779 3.21295 3.73501 3.85128 3.93059 3.96649 4.04329 4.28198 4.45717 4.57527 4.63895 4.65281 4.72106 4.95854 5.03029 5.19514 5.27781 5.48404 5.56383 5.60747 5.70411 5.80160 5.88070 6.09212 6.11909 6.27915 6.72163 6.75118 6.99344 7.01958 7.16847 7.22160 7.38811 7.51017 7.70102 7.75407 7.92512 8.06481 8.19157 8.51055 8.81092 8.84116 8.91705 10.16434 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.020022 B = 0.002072 C = 0.002035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.105755 B =13512.263342 C =13756.100567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.353 6.353 3 C 0.510 3.490 4 O -0.492 6.492 5 C -0.081 4.081 6 C -0.116 4.116 7 C 0.096 3.904 8 N -0.442 5.442 9 C 0.114 3.886 10 C 0.173 3.827 11 N -0.731 5.731 12 C 0.567 3.433 13 O -0.543 6.543 14 C -0.127 4.127 15 C -0.217 4.217 16 C -0.098 4.098 17 C -0.211 4.211 18 C 0.099 3.901 19 C -0.460 4.460 20 H 0.081 0.919 21 C 0.073 3.927 22 N -0.783 5.783 23 Si 0.911 3.089 24 H -0.265 1.265 25 H -0.277 1.277 26 H -0.263 1.263 27 C -0.091 4.091 28 C -0.091 4.091 29 H 0.105 0.895 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.152 0.848 33 H 0.169 0.831 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.400 0.600 37 H 0.088 0.912 38 H 0.093 0.907 39 H 0.096 0.904 40 H 0.285 0.715 41 H 0.134 0.866 42 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.539 -17.827 -6.717 23.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.269 6.269 3 C 0.353 3.647 4 O -0.379 6.379 5 C -0.090 4.090 6 C -0.136 4.136 7 C -0.061 4.061 8 N -0.152 5.152 9 C -0.024 4.024 10 C 0.048 3.952 11 N -0.386 5.386 12 C 0.358 3.642 13 O -0.421 6.421 14 C -0.130 4.130 15 C -0.237 4.237 16 C -0.116 4.116 17 C -0.231 4.231 18 C 0.096 3.904 19 C -0.489 4.489 20 H 0.099 0.901 21 C -0.146 4.146 22 N -0.408 5.408 23 Si 0.735 3.265 24 H -0.190 1.190 25 H -0.202 1.202 26 H -0.187 1.187 27 C -0.111 4.111 28 C -0.112 4.112 29 H 0.124 0.876 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.170 0.830 33 H 0.186 0.814 34 H 0.103 0.897 35 H 0.106 0.894 36 H 0.235 0.765 37 H 0.106 0.894 38 H 0.111 0.889 39 H 0.114 0.886 40 H 0.096 0.904 41 H 0.152 0.848 42 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -13.499 -16.926 -7.629 22.955 hybrid contribution -1.014 0.207 0.377 1.102 sum -14.513 -16.719 -7.252 23.297 Atomic orbital electron populations 1.23360 0.75265 1.04117 1.02992 1.86514 1.24084 1.32172 1.84142 1.21064 0.88704 0.81777 0.73128 1.90880 1.66475 1.35985 1.44517 1.19429 0.89770 0.94939 1.04884 1.22550 0.95294 0.99099 0.96665 1.22909 0.92003 0.95647 0.95571 1.67439 1.41504 0.98254 1.07984 1.21321 0.89962 0.94550 0.96614 1.20030 0.99924 0.89198 0.86008 1.45869 1.61535 1.23818 1.07378 1.18842 0.75816 0.79483 0.90029 1.90706 1.53426 1.51709 1.46246 1.19423 1.05004 0.98520 0.90042 1.20328 1.10201 1.00397 0.92791 1.20431 0.99345 0.96779 0.95045 1.21099 1.07899 0.95974 0.98121 1.17595 0.89908 0.92082 0.90800 1.19549 1.23613 1.05817 0.99929 0.90111 1.25964 0.94550 0.99856 0.94245 1.69777 1.24858 1.37029 1.09092 0.86319 0.79279 0.82172 0.78710 1.18988 1.20228 1.18729 1.21632 0.96369 0.94950 0.98122 1.22234 0.95141 0.98219 0.95601 0.87617 0.91479 0.91559 0.83029 0.81384 0.89729 0.89387 0.76454 0.89387 0.88929 0.88604 0.90355 0.84806 0.82833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.19 10.56 101.05 1.07 1.26 16 2 O -0.35 -2.84 9.92 -40.41 -0.40 -3.24 16 3 C 0.51 5.20 7.92 34.75 0.28 5.48 16 4 O -0.49 -6.31 16.24 -19.21 -0.31 -6.62 16 5 C -0.08 -0.78 5.91 -104.66 -0.62 -1.40 16 6 C -0.12 -0.87 9.71 -39.01 -0.38 -1.25 16 7 C 0.10 0.80 11.17 -17.60 -0.20 0.60 16 8 N -0.44 -5.14 10.24 -9.53 -0.10 -5.23 16 9 C 0.11 1.35 6.15 -82.63 -0.51 0.84 16 10 C 0.17 2.44 5.98 -5.20 -0.03 2.41 16 11 N -0.73 -12.30 5.50 -62.42 -0.34 -12.65 16 12 C 0.57 12.42 7.77 -12.31 -0.10 12.33 16 13 O -0.54 -13.52 16.33 5.32 0.09 -13.43 16 14 C -0.13 -3.01 5.87 -105.03 -0.62 -3.62 16 15 C -0.22 -4.62 9.55 -38.92 -0.37 -4.99 16 16 C -0.10 -2.10 10.01 -39.73 -0.40 -2.50 16 17 C -0.21 -5.04 9.78 -38.81 -0.38 -5.42 16 18 C 0.10 2.62 5.57 -106.88 -0.59 2.03 16 19 C -0.46 -12.12 9.05 -37.73 -0.34 -12.46 16 20 H 0.08 2.01 7.90 -52.48 -0.41 1.60 16 21 C 0.07 1.85 5.14 -17.35 -0.09 1.76 16 22 N -0.78 -20.83 10.97 55.55 0.61 -20.22 16 23 Si 0.91 18.86 29.59 -169.99 -5.03 13.83 16 24 H -0.27 -5.36 7.11 56.52 0.40 -4.95 16 25 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 26 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 27 C -0.09 -2.42 8.23 -38.45 -0.32 -2.74 16 28 C -0.09 -0.98 9.29 -39.00 -0.36 -1.35 16 29 H 0.11 0.26 8.14 -51.93 -0.42 -0.17 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.15 0.74 7.71 -52.48 -0.40 0.33 16 33 H 0.17 0.87 8.06 -52.49 -0.42 0.45 16 34 H 0.08 1.13 8.04 -51.92 -0.42 0.71 16 35 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 36 H 0.40 6.11 6.48 -40.82 -0.26 5.85 16 37 H 0.09 1.57 6.38 -52.49 -0.33 1.24 16 38 H 0.09 1.69 8.06 -52.48 -0.42 1.27 16 39 H 0.10 2.12 8.06 -52.49 -0.42 1.70 16 40 H 0.29 6.99 8.30 -40.82 -0.34 6.65 16 41 H 0.13 3.86 5.76 -52.49 -0.30 3.56 16 42 H 0.15 1.62 7.74 -52.49 -0.41 1.22 16 LS Contribution 372.83 15.07 5.62 5.62 Total: -1.00 -32.50 372.83 -8.46 -40.96 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: -4.64 Total: 10.00 kcal Atomic # 6 Polarization: -5.07 SS G_CDS: -3.96 Total: -9.02 kcal Atomic # 7 Polarization: -38.27 SS G_CDS: 0.17 Total: -38.10 kcal Atomic # 8 Polarization: -22.66 SS G_CDS: -0.63 Total: -23.29 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -5.03 Total: 13.83 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.50 -8.46 -40.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188682224.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.968 kcal (2) G-P(sol) polarization free energy of solvation -32.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds