Wall clock time and date at job start Tue Mar 31 2020 23:42:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34671 * 117.00425 * 2 1 4 4 O 1.21433 * 119.99584 * 0.02562 * 3 2 1 5 5 C 1.48043 * 120.00142 * 179.97438 * 3 2 1 6 6 C 1.39878 * 120.93215 * 359.97438 * 5 3 2 7 7 C 1.38125 * 119.00234 * 179.97438 * 6 5 3 8 8 N 1.31817 * 120.89853 * 359.97438 * 7 6 5 9 9 C 1.31794 * 122.06616 * 0.02562 * 8 7 6 10 10 C 1.50698 * 119.55059 * 179.97438 * 9 8 7 11 11 N 1.46496 * 109.47372 * 274.99874 * 10 9 8 12 12 C 1.34774 * 119.99939 * 179.97438 * 11 10 9 13 13 O 1.21548 * 120.00166 * 359.73307 * 12 11 10 14 14 C 1.47894 * 120.00182 * 180.02562 * 12 11 10 15 15 C 1.39923 * 120.01903 * 359.45080 * 14 12 11 16 16 C 1.38328 * 120.35145 * 179.71622 * 15 14 12 17 17 C 1.37750 * 120.41404 * 0.56160 * 16 15 14 18 18 C 1.40748 * 120.04046 * 359.71829 * 17 16 15 19 19 C 1.41434 * 120.17861 * 180.02562 * 18 17 16 20 20 H 1.08004 * 120.00020 * 334.93685 * 19 18 17 21 21 C 1.39931 * 119.99977 * 154.92624 * 19 18 17 22 22 N 1.30826 * 120.00295 * 342.59792 * 21 19 18 23 23 Si 1.86805 * 120.00173 * 162.59603 * 21 19 18 24 24 H 1.48496 * 109.47063 * 59.99937 * 23 21 19 25 25 H 1.48498 * 109.47262 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47098 * 299.99983 * 23 21 19 27 27 C 1.38992 * 120.02845 * 179.72916 * 14 12 11 28 28 C 1.38174 * 120.89790 * 0.27714 * 9 8 7 29 29 H 1.08996 * 109.47268 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46653 * 299.99938 * 1 2 3 31 31 H 1.09000 * 109.46909 * 59.99810 * 1 2 3 32 32 H 1.08006 * 120.49588 * 359.97438 * 6 5 3 33 33 H 1.08001 * 119.54545 * 179.97438 * 7 6 5 34 34 H 1.09009 * 109.46481 * 155.00117 * 10 9 8 35 35 H 1.08995 * 109.47249 * 35.00608 * 10 9 8 36 36 H 0.96999 * 120.00221 * 0.02562 * 11 10 9 37 37 H 1.07994 * 119.82400 * 359.97438 * 15 14 12 38 38 H 1.08009 * 119.79140 * 180.28383 * 16 15 14 39 39 H 1.08002 * 119.97540 * 179.69605 * 17 16 15 40 40 H 0.97004 * 120.00829 * 180.02562 * 22 21 19 41 41 H 1.07998 * 120.20191 * 359.97334 * 27 14 12 42 42 H 1.07994 * 120.50252 * 179.72103 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.1999 0.0000 4 8 1.4021 2.2183 0.0005 5 6 3.5419 1.2773 0.0006 6 6 4.3226 0.1167 0.0017 7 6 5.6988 0.2353 0.0016 8 7 6.2760 1.4204 0.0001 9 6 5.5784 2.5385 -0.0010 10 6 6.2971 3.8630 -0.0021 11 7 6.6358 4.2361 1.3734 12 6 7.2870 5.3905 1.6176 13 8 7.5978 6.1197 0.6962 14 6 7.6294 5.7669 3.0063 15 6 7.2672 4.9305 4.0679 16 6 7.5891 5.2730 5.3689 17 6 8.2595 6.4464 5.6355 18 6 8.6269 7.3033 4.5811 19 6 9.3157 8.5086 4.8515 20 1 9.2169 8.9821 5.8172 21 6 10.1255 9.0874 3.8680 22 7 10.5226 8.3752 2.8450 23 14 10.6396 10.8773 4.0158 24 1 11.4079 11.0695 5.2719 25 1 11.4884 11.2460 2.8544 26 1 9.4306 11.7393 4.0381 27 6 8.3061 6.9546 3.2583 28 6 4.1969 2.5129 0.0052 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 3.8564 -0.8576 0.0025 33 1 6.3101 -0.6550 0.0029 34 1 5.6517 4.6262 -0.4372 35 1 7.2103 3.7804 -0.5915 36 1 6.3919 3.6520 2.1084 37 1 6.7372 4.0106 3.8701 38 1 7.3091 4.6184 6.1811 39 1 8.5029 6.7093 6.6544 40 1 11.0843 8.7763 2.1634 41 1 8.5840 7.6052 2.4423 42 1 3.6316 3.4330 0.0088 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001188682224.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:42:06 Heat of formation + Delta-G solvation = -83.434003 kcal Electronic energy + Delta-G solvation = -27265.181724 eV Core-core repulsion = 23174.244226 eV Total energy + Delta-G solvation = -4090.937498 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.06320 -41.13724 -40.60997 -38.83042 -37.68800 -36.20337 -35.56888 -34.03850 -33.01884 -31.77826 -31.27642 -28.96139 -28.14571 -27.08950 -25.75799 -24.38663 -23.62799 -22.79482 -21.97804 -21.29386 -19.70222 -19.13255 -18.49429 -17.90240 -17.55739 -17.32648 -17.25814 -16.85368 -16.77705 -16.45453 -16.01922 -15.80290 -15.45574 -15.14247 -14.89214 -14.71063 -14.43259 -14.32051 -14.27935 -14.05879 -13.87163 -13.44167 -13.16268 -12.94523 -12.80349 -12.76922 -12.53020 -12.20600 -12.03754 -11.92232 -11.91198 -11.51855 -11.21320 -11.06510 -10.95164 -10.70724 -10.25647 -10.23585 -9.48173 -9.39262 -8.65801 -6.37979 -0.65106 -0.17444 0.36398 1.00925 1.30622 1.36933 1.41654 1.48519 1.51227 2.07424 2.14487 2.20086 2.72048 2.78783 2.99384 3.39396 3.51767 3.69464 3.75394 3.82052 3.98768 4.23124 4.29970 4.31306 4.32530 4.41104 4.56672 4.57316 4.61601 4.68900 4.75097 4.86302 4.90258 5.08636 5.12916 5.17903 5.28537 5.33290 5.42130 5.51360 5.85082 5.91442 6.04801 6.27697 6.45056 6.45746 6.63659 6.75650 6.87922 6.94229 7.23722 8.30980 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.020022 B = 0.002072 C = 0.002035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.105755 B =13512.263342 C =13756.100567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.347 6.347 3 C 0.513 3.487 4 O -0.527 6.527 5 C -0.091 4.091 6 C -0.088 4.088 7 C 0.100 3.900 8 N -0.467 5.467 9 C 0.102 3.898 10 C 0.173 3.827 11 N -0.708 5.708 12 C 0.565 3.435 13 O -0.584 6.584 14 C -0.137 4.137 15 C -0.199 4.199 16 C -0.096 4.096 17 C -0.216 4.216 18 C 0.067 3.933 19 C -0.497 4.497 20 H 0.085 0.915 21 C 0.029 3.971 22 N -0.825 5.825 23 Si 0.984 3.016 24 H -0.252 1.252 25 H -0.272 1.272 26 H -0.261 1.261 27 C -0.129 4.129 28 C -0.095 4.095 29 H 0.140 0.860 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.187 0.813 33 H 0.205 0.795 34 H 0.087 0.913 35 H 0.076 0.924 36 H 0.410 0.590 37 H 0.131 0.869 38 H 0.138 0.862 39 H 0.110 0.890 40 H 0.287 0.713 41 H 0.100 0.900 42 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.029 -21.194 -5.853 27.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.263 6.263 3 C 0.358 3.642 4 O -0.416 6.416 5 C -0.100 4.100 6 C -0.108 4.108 7 C -0.058 4.058 8 N -0.177 5.177 9 C -0.035 4.035 10 C 0.050 3.950 11 N -0.361 5.361 12 C 0.355 3.645 13 O -0.465 6.465 14 C -0.141 4.141 15 C -0.218 4.218 16 C -0.113 4.113 17 C -0.236 4.236 18 C 0.065 3.935 19 C -0.526 4.526 20 H 0.103 0.897 21 C -0.186 4.186 22 N -0.450 5.450 23 Si 0.804 3.196 24 H -0.176 1.176 25 H -0.197 1.197 26 H -0.185 1.185 27 C -0.149 4.149 28 C -0.116 4.116 29 H 0.158 0.842 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.204 0.796 33 H 0.221 0.779 34 H 0.106 0.894 35 H 0.094 0.906 36 H 0.247 0.753 37 H 0.148 0.852 38 H 0.156 0.844 39 H 0.128 0.872 40 H 0.097 0.903 41 H 0.118 0.882 42 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -15.021 -20.354 -6.746 26.180 hybrid contribution -0.735 0.914 0.106 1.177 sum -15.756 -19.440 -6.639 25.889 Atomic orbital electron populations 1.23675 0.73686 1.06331 1.02781 1.86505 1.25574 1.30735 1.83456 1.21165 0.88853 0.81918 0.72234 1.90869 1.67211 1.37218 1.46331 1.19506 0.89823 0.95263 1.05431 1.22921 0.94808 0.99701 0.93402 1.23527 0.92804 0.95453 0.94034 1.67387 1.42419 0.99131 1.08750 1.20770 0.89963 0.93616 0.99142 1.20069 0.99816 0.91187 0.83975 1.45647 1.59354 1.21956 1.09176 1.18695 0.76252 0.80553 0.89024 1.90680 1.55354 1.53363 1.47070 1.19728 1.04331 0.98023 0.91975 1.20802 1.08218 1.00794 0.92015 1.20912 0.97743 0.96259 0.96425 1.21407 1.07573 0.96474 0.98104 1.17955 0.90846 0.93204 0.91532 1.19835 1.24992 1.06986 1.00782 0.89705 1.26870 0.94122 1.04126 0.93523 1.69881 1.26056 1.38946 1.10155 0.85229 0.78925 0.76281 0.79173 1.17588 1.19685 1.18518 1.21443 0.99392 0.96508 0.97595 1.22122 0.94639 0.98829 0.96015 0.84171 0.91841 0.91737 0.79579 0.77863 0.89442 0.90553 0.75250 0.85158 0.84413 0.87229 0.90252 0.88195 0.83510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.56 113.37 1.20 1.43 16 2 O -0.35 -4.60 9.92 -55.80 -0.55 -5.15 16 3 C 0.51 9.57 7.92 70.42 0.56 10.12 16 4 O -0.53 -13.22 16.24 20.05 0.33 -12.90 16 5 C -0.09 -1.56 5.91 -19.89 -0.12 -1.67 16 6 C -0.09 -0.97 9.71 22.64 0.22 -0.76 16 7 C 0.10 1.28 11.17 84.67 0.95 2.23 16 8 N -0.47 -9.85 10.24 -184.05 -1.89 -11.74 16 9 C 0.10 2.31 6.15 42.55 0.26 2.58 16 10 C 0.17 4.94 5.98 85.63 0.51 5.45 16 11 N -0.71 -23.60 5.50 -469.67 -2.58 -26.18 16 12 C 0.56 25.38 7.77 86.80 0.67 26.06 16 13 O -0.58 -30.65 16.33 -3.87 -0.06 -30.71 16 14 C -0.14 -6.64 5.87 -20.13 -0.12 -6.75 16 15 C -0.20 -8.02 9.55 22.70 0.22 -7.81 16 16 C -0.10 -3.85 10.01 22.18 0.22 -3.63 16 17 C -0.22 -10.21 9.78 22.77 0.22 -9.98 16 18 C 0.07 3.68 5.57 -21.32 -0.12 3.57 16 19 C -0.50 -27.30 9.05 23.47 0.21 -27.08 16 20 H 0.08 4.38 7.90 -2.91 -0.02 4.35 16 21 C 0.03 1.51 5.14 85.25 0.44 1.95 16 22 N -0.82 -46.56 10.97 21.82 0.24 -46.32 16 23 Si 0.98 40.06 29.59 68.60 2.03 42.09 16 24 H -0.25 -9.63 7.11 99.48 0.71 -8.92 16 25 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 26 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 27 C -0.13 -7.26 8.23 23.01 0.19 -7.07 16 28 C -0.10 -1.96 9.29 22.64 0.21 -1.75 16 29 H 0.14 0.17 8.14 -2.39 -0.02 0.15 16 30 H 0.06 0.59 8.14 -2.38 -0.02 0.57 16 31 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.19 0.78 7.71 -2.91 -0.02 0.76 16 33 H 0.20 1.09 8.06 -2.91 -0.02 1.07 16 34 H 0.09 2.43 8.04 -2.38 -0.02 2.41 16 35 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 36 H 0.41 11.77 6.48 -92.71 -0.60 11.16 16 37 H 0.13 4.11 6.38 -2.91 -0.02 4.10 16 38 H 0.14 4.34 8.06 -2.91 -0.02 4.32 16 39 H 0.11 4.76 8.06 -2.91 -0.02 4.74 16 40 H 0.29 14.96 8.30 -92.71 -0.77 14.19 16 41 H 0.10 6.25 5.76 -2.91 -0.02 6.24 16 42 H 0.15 3.14 7.74 -2.91 -0.02 3.12 16 Total: -1.00 -76.30 372.83 3.72 -72.58 By element: Atomic # 1 Polarization: 30.99 SS G_CDS: 0.48 Total: 31.47 kcal Atomic # 6 Polarization: -18.86 SS G_CDS: 5.73 Total: -13.14 kcal Atomic # 7 Polarization: -80.01 SS G_CDS: -4.23 Total: -84.23 kcal Atomic # 8 Polarization: -48.47 SS G_CDS: -0.29 Total: -48.76 kcal Atomic # 14 Polarization: 40.06 SS G_CDS: 2.03 Total: 42.09 kcal Total: -76.30 3.72 -72.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188682224.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.853 kcal (2) G-P(sol) polarization free energy of solvation -76.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds