Wall clock time and date at job start Tue Mar 31 2020 23:41:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34684 * 116.99561 * 2 1 4 4 O 1.21415 * 120.00470 * 359.97438 * 3 2 1 5 5 C 1.48128 * 119.99697 * 180.02562 * 3 2 1 6 6 N 1.32532 * 119.81333 * 354.48821 * 5 3 2 7 7 C 1.31594 * 121.80144 * 179.97438 * 6 5 3 8 8 C 1.38667 * 121.20879 * 359.97438 * 7 6 5 9 9 C 1.38390 * 119.48295 * 0.27853 * 8 7 6 10 10 C 1.39952 * 118.34918 * 359.50698 * 9 8 7 11 11 C 1.47787 * 120.60968 * 180.26586 * 10 9 8 12 12 O 1.21586 * 120.00205 * 123.31323 * 11 10 9 13 13 N 1.34777 * 119.99875 * 303.31050 * 11 10 9 14 14 C 1.36687 * 120.00104 * 5.78245 * 13 11 10 15 15 H 1.08010 * 119.99759 * 315.61524 * 14 13 11 16 16 C 1.39178 * 120.00356 * 135.61416 * 14 13 11 17 17 N 1.31282 * 119.99796 * 0.77594 * 16 14 13 18 18 Si 1.86794 * 120.00043 * 180.77289 * 16 14 13 19 19 H 1.48497 * 109.47143 * 60.00196 * 18 16 14 20 20 H 1.48506 * 109.47250 * 180.02562 * 18 16 14 21 21 H 1.48494 * 109.47399 * 300.00098 * 18 16 14 22 22 C 1.46503 * 120.00243 * 185.77772 * 13 11 10 23 23 C 1.50701 * 109.46747 * 85.40000 * 22 13 11 24 24 C 1.38232 * 120.00181 * 272.70405 * 23 22 13 25 25 C 1.38241 * 119.99703 * 179.76849 * 24 23 22 26 26 C 1.38238 * 120.00001 * 0.51060 * 25 24 23 27 27 C 1.38235 * 120.00003 * 359.74470 * 26 25 24 28 28 C 1.38236 * 119.99897 * 359.97438 * 27 26 25 29 29 H 1.09007 * 109.47336 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47404 * 300.00065 * 1 2 3 31 31 H 1.09002 * 109.47180 * 60.00330 * 1 2 3 32 32 H 1.07998 * 119.39673 * 180.02562 * 7 6 5 33 33 H 1.08002 * 120.25637 * 180.02562 * 8 7 6 34 34 H 1.08003 * 120.82906 * 179.74606 * 9 8 7 35 35 H 0.96992 * 119.99681 * 179.97438 * 17 16 14 36 36 H 1.08997 * 109.47319 * 205.40374 * 22 13 11 37 37 H 1.08998 * 109.46806 * 325.40246 * 22 13 11 38 38 H 1.07998 * 120.00194 * 0.02562 * 24 23 22 39 39 H 1.08001 * 119.99480 * 180.22656 * 25 24 23 40 40 H 1.07997 * 119.99452 * 179.72498 * 26 25 24 41 41 H 1.07999 * 119.99901 * 179.97438 * 27 26 25 42 42 H 1.08000 * 120.00136 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.2001 0.0000 4 8 1.4021 2.2184 -0.0005 5 6 3.5426 1.2776 -0.0006 6 7 4.2606 0.1691 0.1094 7 6 5.5763 0.1925 0.1127 8 6 6.2740 1.3856 0.0002 9 6 5.5756 2.5750 -0.1121 10 6 4.1769 2.5264 -0.1183 11 6 3.3814 3.7657 -0.2417 12 8 2.5735 3.8824 -1.1429 13 7 3.5513 4.7667 0.6446 14 6 4.5398 4.6861 1.5852 15 1 4.6967 3.7645 2.1262 16 6 5.3442 5.7916 1.8460 17 7 5.1436 6.9164 1.1993 18 14 6.7090 5.6749 3.1160 19 1 7.6713 4.6182 2.7128 20 1 7.4140 6.9788 3.2063 21 1 6.1264 5.3352 4.4389 22 6 2.6767 5.9412 0.5999 23 6 1.4218 5.6630 1.3865 24 6 0.3417 5.0563 0.7731 25 6 -0.8077 4.7969 1.4960 26 6 -0.8809 5.1537 2.8295 27 6 0.1973 5.7652 3.4415 28 6 1.3488 6.0194 2.7202 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 6.1228 -0.7345 0.2040 33 1 7.3540 1.3869 0.0042 34 1 6.0969 3.5171 -0.1969 35 1 5.7040 7.6869 1.3813 36 1 3.1949 6.7967 1.0330 37 1 2.4156 6.1604 -0.4353 38 1 0.3974 4.7813 -0.2698 39 1 -1.6502 4.3196 1.0176 40 1 -1.7805 4.9550 3.3930 41 1 0.1399 6.0443 4.4832 42 1 2.1910 6.4975 3.1982 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192495248.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:41:25 Heat of formation + Delta-G solvation = -51.478688 kcal Electronic energy + Delta-G solvation = -30429.439729 eV Core-core repulsion = 26339.887917 eV Total energy + Delta-G solvation = -4089.551811 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.03565 -40.76698 -40.27761 -39.31276 -37.45814 -36.67566 -33.85884 -33.71057 -32.88809 -31.94341 -31.66903 -28.89143 -27.69206 -26.78330 -25.58341 -24.81241 -23.33234 -22.57249 -22.09213 -21.16673 -19.54542 -19.16652 -18.10975 -18.06172 -17.46664 -17.31096 -17.17072 -16.52903 -16.33399 -16.09781 -15.93570 -15.71061 -15.30512 -15.03223 -14.89286 -14.47659 -14.19750 -14.14584 -14.01436 -13.71408 -13.58562 -13.40261 -13.18788 -13.00725 -12.93294 -12.81835 -12.46199 -12.13441 -11.89393 -11.76984 -11.73959 -11.70306 -11.06617 -10.92580 -10.77430 -10.42439 -10.17497 -9.71700 -9.55592 -9.42750 -8.24455 -6.16709 -0.59376 0.12367 0.52339 0.60708 1.43571 1.44471 1.47919 1.56504 1.57299 2.05211 2.28779 2.68712 2.86028 3.06757 3.13173 3.23902 3.86264 3.94962 4.02068 4.03967 4.12104 4.16373 4.24213 4.29723 4.30238 4.38684 4.43115 4.53200 4.64299 4.68249 4.76457 4.89021 5.06855 5.12536 5.19291 5.23803 5.26609 5.31456 5.49883 5.57032 5.64032 5.68756 5.93281 6.06062 6.23267 6.42487 6.53383 6.85068 7.08894 7.52035 7.99990 8.73237 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.007913 B = 0.007268 C = 0.004327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3537.557579 B = 3851.791623 C = 6469.456002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.346 6.346 3 C 0.498 3.502 4 O -0.479 6.479 5 C 0.089 3.911 6 N -0.456 5.456 7 C 0.103 3.897 8 C -0.126 4.126 9 C -0.046 4.046 10 C -0.097 4.097 11 C 0.516 3.484 12 O -0.600 6.600 13 N -0.431 5.431 14 C -0.343 4.343 15 H 0.078 0.922 16 C 0.015 3.985 17 N -0.892 5.892 18 Si 0.977 3.023 19 H -0.250 1.250 20 H -0.281 1.281 21 H -0.274 1.274 22 C 0.150 3.850 23 C -0.105 4.105 24 C -0.100 4.100 25 C -0.132 4.132 26 C -0.123 4.123 27 C -0.130 4.130 28 C -0.113 4.113 29 H 0.140 0.860 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.216 0.784 33 H 0.193 0.807 34 H 0.146 0.854 35 H 0.275 0.725 36 H 0.118 0.882 37 H 0.030 0.970 38 H 0.095 0.905 39 H 0.132 0.868 40 H 0.152 0.848 41 H 0.146 0.854 42 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.490 -9.952 3.533 10.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.263 6.263 3 C 0.340 3.660 4 O -0.364 6.364 5 C -0.047 4.047 6 N -0.167 5.167 7 C -0.057 4.057 8 C -0.145 4.145 9 C -0.072 4.072 10 C -0.103 4.103 11 C 0.305 3.695 12 O -0.485 6.485 13 N -0.149 5.149 14 C -0.471 4.471 15 H 0.095 0.905 16 C -0.188 4.188 17 N -0.529 5.529 18 Si 0.799 3.201 19 H -0.174 1.174 20 H -0.206 1.206 21 H -0.199 1.199 22 C 0.027 3.973 23 C -0.107 4.107 24 C -0.119 4.119 25 C -0.150 4.150 26 C -0.141 4.141 27 C -0.148 4.148 28 C -0.132 4.132 29 H 0.158 0.842 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.232 0.768 33 H 0.210 0.790 34 H 0.163 0.837 35 H 0.086 0.914 36 H 0.136 0.864 37 H 0.048 0.952 38 H 0.113 0.887 39 H 0.150 0.850 40 H 0.170 0.830 41 H 0.164 0.836 42 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -1.546 -10.118 3.146 10.708 hybrid contribution 0.682 1.363 0.098 1.527 sum -0.864 -8.755 3.244 9.377 Atomic orbital electron populations 1.23554 0.74713 1.05757 1.02159 1.86606 1.24731 1.30925 1.83997 1.21108 0.88562 0.82220 0.74121 1.91003 1.65885 1.36073 1.43409 1.19919 0.90942 0.89362 1.04456 1.67633 1.10127 1.28148 1.10805 1.23752 0.88191 1.00310 0.93482 1.22875 1.04009 0.91256 0.96401 1.21948 0.91017 1.01104 0.93126 1.20929 0.96410 0.93492 0.99440 1.18418 0.83749 0.84860 0.82509 1.90591 1.39807 1.82280 1.35844 1.43253 1.28127 1.16075 1.27420 1.19401 1.09429 1.00373 1.17873 0.90481 1.26233 0.99259 0.94478 0.98844 1.69679 1.39006 1.02703 1.41559 0.85234 0.78353 0.78326 0.78152 1.17380 1.20585 1.19879 1.20482 0.87850 0.91982 0.97004 1.20531 0.95620 0.98907 0.95595 1.21076 0.93774 0.97362 0.99683 1.21293 0.97635 1.00745 0.95352 1.21389 0.99449 0.98818 0.94453 1.21377 0.92957 0.99844 1.00601 1.21119 0.98365 1.00292 0.93445 0.84159 0.92370 0.92490 0.76805 0.79002 0.83671 0.91417 0.86428 0.95174 0.88698 0.85008 0.82987 0.83590 0.87081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.83 10.56 113.37 1.20 2.03 16 2 O -0.35 -12.46 10.39 -55.93 -0.58 -13.04 16 3 C 0.50 21.62 7.87 70.45 0.55 22.18 16 4 O -0.48 -23.45 12.35 27.68 0.34 -23.11 16 5 C 0.09 3.71 6.78 42.23 0.29 3.99 16 6 N -0.46 -15.50 10.11 -183.97 -1.86 -17.36 16 7 C 0.10 2.50 11.17 84.83 0.95 3.45 16 8 C -0.13 -3.07 10.10 22.41 0.23 -2.85 16 9 C -0.05 -1.64 8.43 22.72 0.19 -1.45 16 10 C -0.10 -4.30 4.89 -19.77 -0.10 -4.39 16 11 C 0.52 27.11 5.67 86.77 0.49 27.60 16 12 O -0.60 -34.62 13.52 18.78 0.25 -34.36 16 13 N -0.43 -22.63 2.51 -642.98 -1.61 -24.24 16 14 C -0.34 -17.07 7.18 84.16 0.60 -16.47 16 15 H 0.08 3.82 7.21 -2.91 -0.02 3.80 16 16 C 0.02 0.72 5.34 85.00 0.45 1.17 16 17 N -0.89 -45.13 10.81 21.70 0.23 -44.90 16 18 Si 0.98 36.87 29.55 68.60 2.03 38.90 16 19 H -0.25 -8.61 7.11 99.48 0.71 -7.91 16 20 H -0.28 -10.52 7.11 99.48 0.71 -9.82 16 21 H -0.27 -10.37 7.11 99.48 0.71 -9.66 16 22 C 0.15 7.82 5.06 85.63 0.43 8.25 16 23 C -0.11 -4.98 5.43 -19.87 -0.11 -5.09 16 24 C -0.10 -4.55 9.11 22.27 0.20 -4.35 16 25 C -0.13 -4.87 10.05 22.27 0.22 -4.64 16 26 C -0.12 -3.90 10.05 22.27 0.22 -3.68 16 27 C -0.13 -4.40 10.05 22.27 0.22 -4.18 16 28 C -0.11 -4.75 9.69 22.27 0.22 -4.54 16 29 H 0.14 2.45 8.14 -2.38 -0.02 2.43 16 30 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.22 2.84 8.06 -2.91 -0.02 2.82 16 33 H 0.19 2.73 8.06 -2.91 -0.02 2.71 16 34 H 0.15 5.39 7.57 -2.91 -0.02 5.37 16 35 H 0.28 13.12 8.31 -92.71 -0.77 12.35 16 36 H 0.12 6.34 5.18 -2.39 -0.01 6.33 16 37 H 0.03 1.67 7.45 -2.39 -0.02 1.66 16 38 H 0.09 4.84 7.20 -2.91 -0.02 4.82 16 39 H 0.13 4.13 8.06 -2.91 -0.02 4.11 16 40 H 0.15 3.53 8.06 -2.91 -0.02 3.50 16 41 H 0.15 3.87 8.06 -2.91 -0.02 3.85 16 42 H 0.11 4.71 8.06 -2.91 -0.02 4.68 16 Total: -1.00 -73.08 363.67 6.13 -66.94 By element: Atomic # 1 Polarization: 33.07 SS G_CDS: 1.06 Total: 34.12 kcal Atomic # 6 Polarization: 10.77 SS G_CDS: 6.27 Total: 17.05 kcal Atomic # 7 Polarization: -83.27 SS G_CDS: -3.24 Total: -86.51 kcal Atomic # 8 Polarization: -70.52 SS G_CDS: 0.01 Total: -70.50 kcal Atomic # 14 Polarization: 36.87 SS G_CDS: 2.03 Total: 38.90 kcal Total: -73.08 6.13 -66.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192495248.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.464 kcal (2) G-P(sol) polarization free energy of solvation -73.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds