Wall clock time and date at job start Tue Mar 31 2020 23:14:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45196 * 109.47093 * 2 1 4 4 C 1.34226 * 117.00211 * 180.02562 * 3 2 1 5 5 O 1.20829 * 120.00176 * 359.97438 * 4 3 2 6 6 C 1.50704 * 120.00439 * 179.97438 * 4 3 2 7 7 C 1.52998 * 109.47033 * 179.97438 * 6 4 3 8 8 H 1.09003 * 109.47077 * 55.00803 * 7 6 4 9 9 C 1.50704 * 109.46872 * 175.00060 * 7 6 4 10 10 H 1.08000 * 120.00152 * 240.00592 * 9 7 6 11 11 C 1.37879 * 119.99829 * 60.00326 * 9 7 6 12 12 N 1.31513 * 120.00301 * 359.97438 * 11 9 7 13 13 Si 1.86798 * 119.99970 * 180.02562 * 11 9 7 14 14 H 1.48505 * 109.47305 * 89.99571 * 13 11 9 15 15 H 1.48502 * 109.47065 * 209.99815 * 13 11 9 16 16 H 1.48497 * 109.47294 * 330.00069 * 13 11 9 17 17 O 1.42893 * 109.47452 * 294.99956 * 7 6 4 18 18 C 1.35773 * 117.00227 * 156.07535 * 17 7 6 19 19 C 1.39017 * 119.90138 * 5.16104 * 18 17 7 20 20 C 1.37717 * 120.14276 * 179.69371 * 19 18 17 21 21 C 1.39622 * 119.94440 * 0.60442 * 20 19 18 22 22 C 1.47821 * 120.09506 * 179.69573 * 21 20 19 23 23 N 1.30374 * 119.99821 * 174.26667 * 22 21 20 24 24 N 1.37829 * 120.00087 * 354.26897 * 22 21 20 25 25 O 1.41594 * 119.99949 * 179.72656 * 24 22 21 26 26 C 1.39810 * 119.80871 * 359.41463 * 21 20 19 27 27 F 1.35091 * 120.07252 * 180.29988 * 26 21 20 28 28 C 1.38103 * 119.85373 * 0.28624 * 26 21 20 29 29 H 1.09005 * 109.46995 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47263 * 299.99648 * 1 2 3 31 31 H 1.08995 * 109.47579 * 59.99951 * 1 2 3 32 32 H 1.09001 * 109.47149 * 239.99573 * 2 1 3 33 33 H 1.09005 * 109.47194 * 119.99683 * 2 1 3 34 34 H 1.09002 * 109.46787 * 60.00276 * 6 4 3 35 35 H 1.08992 * 109.47054 * 300.00214 * 6 4 3 36 36 H 0.97001 * 120.00232 * 180.02562 * 12 11 9 37 37 H 1.08007 * 119.92651 * 359.97438 * 19 18 17 38 38 H 1.07998 * 120.02582 * 180.29646 * 20 19 18 39 39 H 0.96997 * 120.00486 * 5.18201 * 23 22 21 40 40 H 0.97003 * 119.99591 * 359.97438 * 24 22 21 41 41 H 0.96705 * 114.00242 * 180.27354 * 25 24 22 42 42 H 1.08009 * 119.97242 * 180.02562 * 28 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3689 0.0000 4 6 3.3446 1.5448 -0.0005 5 8 4.0807 0.5867 -0.0005 6 6 3.9207 2.9374 -0.0012 7 6 5.4486 2.8573 -0.0010 8 1 5.7806 2.2493 -0.8427 9 6 6.0243 4.2444 -0.1255 10 1 6.6591 4.4925 -0.9633 11 6 5.7406 5.1969 0.8303 12 7 4.9673 4.8950 1.8503 13 14 6.4537 6.9165 0.6757 14 1 5.5186 7.7724 -0.0978 15 1 6.6494 7.4947 2.0295 16 1 7.7599 6.8494 -0.0275 17 8 5.8944 2.2644 1.2202 18 6 7.1127 1.6653 1.2058 19 6 7.9095 1.7423 0.0693 20 6 9.1487 1.1418 0.0515 21 6 9.6009 0.4434 1.1727 22 6 10.9277 -0.2081 1.1548 23 7 11.3958 -0.7635 2.2375 24 7 11.6699 -0.2283 -0.0064 25 8 12.9433 -0.8473 -0.0220 26 6 8.7977 0.3670 2.3145 27 9 9.2325 -0.3023 3.4045 28 6 7.5590 0.9774 2.3257 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.5851 3.4698 0.8889 35 1 3.5844 3.4693 -0.8911 36 1 4.7674 5.5652 2.5225 37 1 7.5578 2.2781 -0.8001 38 1 9.7682 1.2069 -0.8308 39 1 10.8439 -0.8158 3.0334 40 1 11.3214 0.1846 -0.8120 41 1 13.3895 -0.8076 -0.8790 42 1 6.9370 0.9199 3.2069 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001229085288.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:14:34 Heat of formation + Delta-G solvation = -105.674098 kcal Electronic energy + Delta-G solvation = -29669.355415 eV Core-core repulsion = 25146.684289 eV Total energy + Delta-G solvation = -4522.671126 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.131 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.04007 -40.01406 -39.37442 -37.82953 -36.61877 -35.95753 -34.48530 -33.31467 -31.69193 -30.95426 -30.40279 -29.77829 -28.69639 -26.52274 -23.60867 -22.89366 -22.63601 -21.63398 -20.69106 -19.95381 -19.02474 -18.16059 -17.26884 -16.41990 -16.39410 -16.24401 -16.04520 -15.76967 -15.62539 -15.46101 -15.31345 -14.76402 -14.02090 -13.92082 -13.80766 -13.77212 -13.62905 -13.10738 -12.91145 -12.70723 -12.43353 -12.28282 -12.13894 -11.94101 -11.73199 -11.67615 -11.35120 -11.15745 -11.06086 -10.95805 -10.77969 -10.46460 -10.24179 -9.86957 -9.63393 -9.38890 -8.93499 -8.88048 -8.57827 -8.05742 -7.43032 -6.42536 -4.64878 1.30834 1.55093 2.24592 2.87231 3.07225 3.17367 3.18731 3.19214 3.22062 3.94730 4.09342 4.14200 4.53766 4.77200 4.93966 5.01320 5.02674 5.07353 5.14221 5.29436 5.38044 5.44932 5.62492 5.74597 5.81709 5.82750 5.99723 6.10373 6.18054 6.20115 6.25488 6.35468 6.46628 6.59529 6.76509 6.86922 7.08363 7.16050 7.40553 7.47556 7.64462 7.84122 8.23828 8.37688 8.57786 8.85194 9.14369 10.58739 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.008846 B = 0.003775 C = 0.002957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3164.418643 B = 7415.178207 C = 9466.466313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.059 3.941 3 O -0.365 6.365 4 C 0.456 3.544 5 O -0.516 6.516 6 C -0.102 4.102 7 C 0.221 3.779 8 H 0.039 0.961 9 C -0.566 4.566 10 H 0.072 0.928 11 C 0.087 3.913 12 N -0.855 5.855 13 Si 0.898 3.102 14 H -0.275 1.275 15 H -0.282 1.282 16 H -0.270 1.270 17 O -0.276 6.276 18 C 0.237 3.763 19 C -0.208 4.208 20 C -0.032 4.032 21 C -0.207 4.207 22 C 0.482 3.518 23 N -0.771 5.771 24 N -0.591 5.591 25 O -0.313 6.313 26 C 0.162 3.838 27 F -0.130 7.130 28 C -0.209 4.209 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.142 0.858 35 H 0.106 0.894 36 H 0.270 0.730 37 H 0.147 0.853 38 H 0.126 0.874 39 H 0.354 0.646 40 H 0.413 0.587 41 H 0.377 0.623 42 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.333 -5.431 -6.397 8.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.015 4.015 3 O -0.283 6.283 4 C 0.301 3.699 5 O -0.404 6.404 6 C -0.139 4.139 7 C 0.167 3.833 8 H 0.056 0.944 9 C -0.602 4.602 10 H 0.090 0.910 11 C -0.121 4.121 12 N -0.490 5.490 13 Si 0.724 3.276 14 H -0.201 1.201 15 H -0.208 1.208 16 H -0.195 1.195 17 O -0.186 6.186 18 C 0.184 3.816 19 C -0.227 4.227 20 C -0.053 4.053 21 C -0.213 4.213 22 C 0.201 3.799 23 N -0.411 5.411 24 N -0.278 5.278 25 O -0.206 6.206 26 C 0.141 3.859 27 F -0.109 7.109 28 C -0.228 4.228 29 H 0.092 0.908 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.159 0.841 35 H 0.124 0.876 36 H 0.081 0.919 37 H 0.165 0.835 38 H 0.143 0.857 39 H 0.180 0.820 40 H 0.255 0.745 41 H 0.219 0.781 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -0.528 -6.321 -5.049 8.107 hybrid contribution -0.211 1.286 -0.656 1.459 sum -0.738 -5.035 -5.705 7.645 Atomic orbital electron populations 1.21781 0.93234 1.02405 1.03355 1.22874 0.94911 0.81607 1.02111 1.86568 1.25992 1.31141 1.84624 1.24853 0.79624 0.94221 0.71208 1.90601 1.60233 1.43637 1.45910 1.21827 0.96185 0.88362 1.07550 1.19960 0.89087 0.92777 0.81478 0.94360 1.21393 1.33412 0.94683 1.10752 0.91000 1.25057 0.93593 0.99222 0.94277 1.69839 1.33714 1.34727 1.10682 0.86491 0.79844 0.83315 0.77920 1.20090 1.20792 1.19456 1.86262 1.27891 1.64491 1.39915 1.18807 0.86082 0.85435 0.91227 1.21446 0.95416 1.05479 1.00339 1.20709 0.95186 0.93763 0.95621 1.18998 0.95596 1.10461 0.96232 1.18918 0.84129 0.90390 0.86465 1.69222 1.40918 1.27798 1.03172 1.44634 1.09383 1.63199 1.10567 1.89269 1.19165 1.77138 1.35009 1.17055 0.92788 0.94110 0.81989 1.91180 1.88440 1.78097 1.53136 1.20125 0.96269 1.05551 1.00905 0.90779 0.91571 0.91689 0.91817 0.91659 0.84080 0.87606 0.91937 0.83510 0.85664 0.81953 0.74525 0.78090 0.84010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 10.29 37.16 0.38 -1.12 16 2 C 0.06 0.80 6.19 37.16 0.23 1.03 16 3 O -0.37 -6.21 10.22 -39.25 -0.40 -6.61 16 4 C 0.46 8.82 7.84 36.01 0.28 9.11 16 5 O -0.52 -10.97 15.17 -24.05 -0.36 -11.34 16 6 C -0.10 -2.04 5.22 -27.88 -0.15 -2.18 16 7 C 0.22 4.75 1.35 -27.88 -0.04 4.71 16 8 H 0.04 0.79 6.16 -51.93 -0.32 0.47 16 9 C -0.57 -12.88 7.90 -34.44 -0.27 -13.15 16 10 H 0.07 1.59 7.81 -52.49 -0.41 1.18 16 11 C 0.09 2.04 5.24 -17.82 -0.09 1.95 16 12 N -0.86 -20.89 10.93 55.43 0.61 -20.28 16 13 Si 0.90 18.59 29.54 -169.99 -5.02 13.57 16 14 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 15 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 16 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 17 O -0.28 -6.30 8.42 -33.46 -0.28 -6.58 16 18 C 0.24 4.85 6.59 -39.09 -0.26 4.59 16 19 C -0.21 -3.73 8.66 -39.48 -0.34 -4.07 16 20 C -0.03 -0.50 9.53 -39.26 -0.37 -0.87 16 21 C -0.21 -3.49 5.88 -104.87 -0.62 -4.11 16 22 C 0.48 8.23 7.95 -154.27 -1.23 7.01 16 23 N -0.77 -14.85 13.66 32.50 0.44 -14.40 16 24 N -0.59 -7.93 7.02 32.45 0.23 -7.70 16 25 O -0.31 -4.00 14.71 -11.47 -0.17 -4.17 16 26 C 0.16 2.93 7.27 -39.04 -0.28 2.65 16 27 F -0.13 -2.29 13.91 2.25 0.03 -2.26 16 28 C -0.21 -4.00 9.95 -39.42 -0.39 -4.40 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.83 8.13 -51.93 -0.42 0.41 16 33 H 0.06 0.91 8.13 -51.93 -0.42 0.48 16 34 H 0.14 3.11 6.22 -51.93 -0.32 2.79 16 35 H 0.11 1.90 8.14 -51.93 -0.42 1.48 16 36 H 0.27 6.37 8.31 -40.82 -0.34 6.03 16 37 H 0.15 2.58 5.64 -52.48 -0.30 2.29 16 38 H 0.13 1.38 6.45 -52.49 -0.34 1.04 16 39 H 0.35 6.63 5.21 -40.82 -0.21 6.42 16 40 H 0.41 3.95 6.96 -40.82 -0.28 3.66 16 41 H 0.38 2.24 9.28 45.56 0.42 2.67 16 42 H 0.14 2.62 8.06 -52.48 -0.42 2.20 16 LS Contribution 363.70 15.07 5.48 5.48 Total: -1.00 -30.98 363.70 -6.45 -37.43 By element: Atomic # 1 Polarization: 19.57 SS G_CDS: -3.85 Total: 15.71 kcal Atomic # 6 Polarization: 4.29 SS G_CDS: -3.15 Total: 1.15 kcal Atomic # 7 Polarization: -43.67 SS G_CDS: 1.28 Total: -42.39 kcal Atomic # 8 Polarization: -27.48 SS G_CDS: -1.22 Total: -28.70 kcal Atomic # 9 Polarization: -2.29 SS G_CDS: 0.03 Total: -2.26 kcal Atomic # 14 Polarization: 18.59 SS G_CDS: -5.02 Total: 13.57 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.98 -6.45 -37.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229085288.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.241 kcal (2) G-P(sol) polarization free energy of solvation -30.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds