Wall clock time and date at job start Tue Mar 31 2020 23:14:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45196 * 109.47093 * 2 1 4 4 C 1.34226 * 117.00211 * 180.02562 * 3 2 1 5 5 O 1.20829 * 120.00176 * 359.97438 * 4 3 2 6 6 C 1.50704 * 120.00439 * 179.97438 * 4 3 2 7 7 C 1.52998 * 109.47033 * 179.97438 * 6 4 3 8 8 H 1.09003 * 109.47077 * 55.00803 * 7 6 4 9 9 C 1.50704 * 109.46872 * 175.00060 * 7 6 4 10 10 H 1.08000 * 120.00152 * 240.00592 * 9 7 6 11 11 C 1.37879 * 119.99829 * 60.00326 * 9 7 6 12 12 N 1.31513 * 120.00301 * 359.97438 * 11 9 7 13 13 Si 1.86798 * 119.99970 * 180.02562 * 11 9 7 14 14 H 1.48505 * 109.47305 * 89.99571 * 13 11 9 15 15 H 1.48502 * 109.47065 * 209.99815 * 13 11 9 16 16 H 1.48497 * 109.47294 * 330.00069 * 13 11 9 17 17 O 1.42893 * 109.47452 * 294.99956 * 7 6 4 18 18 C 1.35773 * 117.00227 * 156.07535 * 17 7 6 19 19 C 1.39017 * 119.90138 * 5.16104 * 18 17 7 20 20 C 1.37717 * 120.14276 * 179.69371 * 19 18 17 21 21 C 1.39622 * 119.94440 * 0.60442 * 20 19 18 22 22 C 1.47821 * 120.09506 * 179.69573 * 21 20 19 23 23 N 1.30374 * 119.99821 * 174.26667 * 22 21 20 24 24 N 1.37829 * 120.00087 * 354.26897 * 22 21 20 25 25 O 1.41594 * 119.99949 * 179.72656 * 24 22 21 26 26 C 1.39810 * 119.80871 * 359.41463 * 21 20 19 27 27 F 1.35091 * 120.07252 * 180.29988 * 26 21 20 28 28 C 1.38103 * 119.85373 * 0.28624 * 26 21 20 29 29 H 1.09005 * 109.46995 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47263 * 299.99648 * 1 2 3 31 31 H 1.08995 * 109.47579 * 59.99951 * 1 2 3 32 32 H 1.09001 * 109.47149 * 239.99573 * 2 1 3 33 33 H 1.09005 * 109.47194 * 119.99683 * 2 1 3 34 34 H 1.09002 * 109.46787 * 60.00276 * 6 4 3 35 35 H 1.08992 * 109.47054 * 300.00214 * 6 4 3 36 36 H 0.97001 * 120.00232 * 180.02562 * 12 11 9 37 37 H 1.08007 * 119.92651 * 359.97438 * 19 18 17 38 38 H 1.07998 * 120.02582 * 180.29646 * 20 19 18 39 39 H 0.96997 * 120.00486 * 5.18201 * 23 22 21 40 40 H 0.97003 * 119.99591 * 359.97438 * 24 22 21 41 41 H 0.96705 * 114.00242 * 180.27354 * 25 24 22 42 42 H 1.08009 * 119.97242 * 180.02562 * 28 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3689 0.0000 4 6 3.3446 1.5448 -0.0005 5 8 4.0807 0.5867 -0.0005 6 6 3.9207 2.9374 -0.0012 7 6 5.4486 2.8573 -0.0010 8 1 5.7806 2.2493 -0.8427 9 6 6.0243 4.2444 -0.1255 10 1 6.6591 4.4925 -0.9633 11 6 5.7406 5.1969 0.8303 12 7 4.9673 4.8950 1.8503 13 14 6.4537 6.9165 0.6757 14 1 5.5186 7.7724 -0.0978 15 1 6.6494 7.4947 2.0295 16 1 7.7599 6.8494 -0.0275 17 8 5.8944 2.2644 1.2202 18 6 7.1127 1.6653 1.2058 19 6 7.9095 1.7423 0.0693 20 6 9.1487 1.1418 0.0515 21 6 9.6009 0.4434 1.1727 22 6 10.9277 -0.2081 1.1548 23 7 11.3958 -0.7635 2.2375 24 7 11.6699 -0.2283 -0.0064 25 8 12.9433 -0.8473 -0.0220 26 6 8.7977 0.3670 2.3145 27 9 9.2325 -0.3023 3.4045 28 6 7.5590 0.9774 2.3257 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.5851 3.4698 0.8889 35 1 3.5844 3.4693 -0.8911 36 1 4.7674 5.5652 2.5225 37 1 7.5578 2.2781 -0.8001 38 1 9.7682 1.2069 -0.8308 39 1 10.8439 -0.8158 3.0334 40 1 11.3214 0.1846 -0.8120 41 1 13.3895 -0.8076 -0.8790 42 1 6.9370 0.9199 3.2069 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001229085288.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:14:34 Heat of formation + Delta-G solvation = -125.167562 kcal Electronic energy + Delta-G solvation = -29670.200715 eV Core-core repulsion = 25146.684289 eV Total energy + Delta-G solvation = -4523.516426 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.131 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -50.44875 -41.50553 -40.82178 -39.17257 -37.89998 -37.36930 -35.79368 -34.95826 -32.90965 -32.33568 -31.79197 -31.06325 -30.11467 -28.18200 -25.07354 -24.10663 -24.02954 -23.02461 -22.00993 -21.43908 -20.18718 -19.66765 -18.77221 -17.95780 -17.78677 -17.64902 -17.49314 -17.10665 -16.98514 -16.84582 -16.78971 -16.39786 -15.48132 -15.27912 -15.08715 -15.00328 -14.91422 -14.25973 -14.20340 -14.01341 -13.70729 -13.64565 -13.60965 -13.28979 -13.08219 -12.94630 -12.79349 -12.56960 -12.51510 -12.43179 -12.30964 -11.97558 -11.48249 -11.43727 -11.23874 -10.98649 -10.68001 -10.26202 -9.98339 -9.24223 -8.91591 -8.17846 -6.44283 -0.11210 0.16218 1.21700 1.33976 1.44688 1.50305 1.56536 1.82033 1.86128 2.39233 2.45539 2.72460 3.07728 3.27198 3.49313 3.72971 3.96157 4.02248 4.06687 4.08132 4.14559 4.21908 4.34802 4.36508 4.50673 4.57031 4.79653 4.86626 4.89446 4.93636 4.95524 5.14087 5.15851 5.27915 5.40555 5.46826 5.55305 5.68597 5.74640 5.93691 6.21387 6.54638 6.87930 6.94679 6.95351 7.37495 7.62472 8.82377 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.008846 B = 0.003775 C = 0.002957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3164.418643 B = 7415.178207 C = 9466.466313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.049 3.951 3 O -0.367 6.367 4 C 0.463 3.537 5 O -0.539 6.539 6 C -0.099 4.099 7 C 0.220 3.780 8 H 0.043 0.957 9 C -0.569 4.569 10 H 0.077 0.923 11 C 0.049 3.951 12 N -0.882 5.882 13 Si 0.949 3.051 14 H -0.268 1.268 15 H -0.293 1.293 16 H -0.267 1.267 17 O -0.302 6.302 18 C 0.206 3.794 19 C -0.213 4.213 20 C -0.011 4.011 21 C -0.203 4.203 22 C 0.482 3.518 23 N -0.805 5.805 24 N -0.576 5.576 25 O -0.330 6.330 26 C 0.156 3.844 27 F -0.130 7.130 28 C -0.222 4.222 29 H 0.102 0.898 30 H 0.064 0.936 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.058 0.942 34 H 0.121 0.879 35 H 0.123 0.877 36 H 0.267 0.733 37 H 0.151 0.849 38 H 0.176 0.824 39 H 0.351 0.649 40 H 0.432 0.568 41 H 0.406 0.594 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.588 -5.623 -8.492 10.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.024 4.024 3 O -0.285 6.285 4 C 0.308 3.692 5 O -0.429 6.429 6 C -0.137 4.137 7 C 0.166 3.834 8 H 0.061 0.939 9 C -0.606 4.606 10 H 0.095 0.905 11 C -0.157 4.157 12 N -0.518 5.518 13 Si 0.775 3.225 14 H -0.193 1.193 15 H -0.219 1.219 16 H -0.192 1.192 17 O -0.213 6.213 18 C 0.156 3.844 19 C -0.232 4.232 20 C -0.031 4.031 21 C -0.209 4.209 22 C 0.201 3.799 23 N -0.447 5.447 24 N -0.264 5.264 25 O -0.228 6.228 26 C 0.134 3.866 27 F -0.108 7.108 28 C -0.242 4.242 29 H 0.120 0.880 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.077 0.923 34 H 0.138 0.862 35 H 0.141 0.859 36 H 0.077 0.923 37 H 0.169 0.831 38 H 0.193 0.807 39 H 0.176 0.824 40 H 0.277 0.723 41 H 0.253 0.747 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 0.219 -6.502 -7.226 9.723 hybrid contribution -0.389 1.225 -0.059 1.287 sum -0.171 -5.277 -7.285 8.997 Atomic orbital electron populations 1.21807 0.90131 1.04358 1.03671 1.23257 0.97327 0.79752 1.02087 1.86546 1.24473 1.33430 1.84010 1.24605 0.80321 0.93584 0.70695 1.90583 1.60968 1.44194 1.47115 1.21704 0.95735 0.88920 1.07301 1.19972 0.89743 0.92262 0.81437 0.93932 1.21638 1.33073 0.95293 1.10558 0.90521 1.25642 0.93968 1.01870 0.94191 1.69964 1.35074 1.35339 1.11379 0.85692 0.79395 0.80243 0.77185 1.19282 1.21920 1.19164 1.86209 1.29230 1.65474 1.40395 1.19146 0.86126 0.86525 0.92648 1.21555 0.96139 1.05924 0.99553 1.21137 0.94322 0.91159 0.96471 1.19166 0.95531 1.10100 0.96089 1.19033 0.84289 0.89579 0.86998 1.69281 1.41543 1.29931 1.03960 1.44446 1.09599 1.62287 1.10030 1.89231 1.18540 1.76990 1.38083 1.17174 0.92693 0.94089 0.82604 1.91180 1.88356 1.78034 1.53254 1.20142 0.96947 1.06306 1.00782 0.87965 0.91648 0.90962 0.91275 0.92349 0.86165 0.85922 0.92336 0.83134 0.80722 0.82403 0.72263 0.74650 0.84616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.57 10.29 71.98 0.74 -1.83 16 2 C 0.05 1.30 6.19 71.98 0.45 1.75 16 3 O -0.37 -12.42 10.22 -51.37 -0.53 -12.95 16 4 C 0.46 18.09 7.84 71.24 0.56 18.65 16 5 O -0.54 -23.22 15.17 27.02 0.41 -22.81 16 6 C -0.10 -4.03 5.22 29.85 0.16 -3.87 16 7 C 0.22 9.53 1.35 29.85 0.04 9.57 16 8 H 0.04 1.76 6.16 -2.39 -0.01 1.75 16 9 C -0.57 -25.77 7.90 25.60 0.20 -25.57 16 10 H 0.08 3.31 7.81 -2.91 -0.02 3.29 16 11 C 0.05 2.29 5.24 84.66 0.44 2.73 16 12 N -0.88 -44.03 10.93 21.45 0.23 -43.79 16 13 Si 0.95 37.93 29.54 68.60 2.03 39.95 16 14 H -0.27 -10.27 7.11 99.48 0.71 -9.57 16 15 H -0.29 -12.12 7.11 99.48 0.71 -11.41 16 16 H -0.27 -10.45 7.11 99.48 0.71 -9.74 16 17 O -0.30 -14.16 8.42 -77.21 -0.65 -14.81 16 18 C 0.21 8.57 6.59 22.59 0.15 8.72 16 19 C -0.21 -7.39 8.66 22.33 0.19 -7.19 16 20 C -0.01 -0.31 9.53 22.48 0.21 -0.10 16 21 C -0.20 -6.50 5.88 -20.03 -0.12 -6.62 16 22 C 0.48 15.45 7.95 136.38 1.08 16.53 16 23 N -0.81 -30.17 13.66 -51.10 -0.70 -30.87 16 24 N -0.58 -13.49 7.02 -51.26 -0.36 -13.85 16 25 O -0.33 -7.38 14.71 -38.77 -0.57 -7.95 16 26 C 0.16 5.63 7.27 22.62 0.16 5.80 16 27 F -0.13 -4.62 13.91 44.97 0.63 -4.00 16 28 C -0.22 -8.75 9.95 22.37 0.22 -8.52 16 29 H 0.10 1.29 8.14 -2.38 -0.02 1.28 16 30 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.07 1.75 8.13 -2.39 -0.02 1.73 16 33 H 0.06 1.61 8.13 -2.38 -0.02 1.60 16 34 H 0.12 5.48 6.22 -2.39 -0.01 5.47 16 35 H 0.12 4.41 8.14 -2.39 -0.02 4.39 16 36 H 0.27 12.91 8.31 -92.71 -0.77 12.14 16 37 H 0.15 5.09 5.64 -2.91 -0.02 5.07 16 38 H 0.18 2.99 6.45 -2.91 -0.02 2.97 16 39 H 0.35 13.06 5.21 -92.71 -0.48 12.58 16 40 H 0.43 6.30 6.96 -92.71 -0.65 5.66 16 41 H 0.41 3.30 9.28 -74.05 -0.69 2.61 16 42 H 0.14 5.33 8.06 -2.91 -0.02 5.30 16 Total: -1.00 -67.83 363.70 4.30 -63.53 By element: Atomic # 1 Polarization: 38.17 SS G_CDS: -0.69 Total: 37.48 kcal Atomic # 6 Polarization: 5.55 SS G_CDS: 4.50 Total: 10.05 kcal Atomic # 7 Polarization: -87.68 SS G_CDS: -0.82 Total: -88.51 kcal Atomic # 8 Polarization: -57.18 SS G_CDS: -1.34 Total: -58.51 kcal Atomic # 9 Polarization: -4.62 SS G_CDS: 0.63 Total: -4.00 kcal Atomic # 14 Polarization: 37.93 SS G_CDS: 2.03 Total: 39.95 kcal Total: -67.83 4.30 -63.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229085288.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.634 kcal (2) G-P(sol) polarization free energy of solvation -67.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds