Wall clock time and date at job start Tue Mar 31 2020 23:24:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46499 * 120.00225 * 2 1 4 4 C 1.53006 * 109.47075 * 89.99694 * 3 2 1 5 5 H 1.09004 * 112.95599 * 285.33106 * 4 3 2 6 6 C 1.53938 * 113.75818 * 153.69215 * 4 3 2 7 7 C 1.53936 * 86.33765 * 221.96205 * 6 4 3 8 8 N 1.47953 * 113.75729 * 56.98079 * 4 3 2 9 9 C 1.46901 * 111.00049 * 251.89807 * 8 4 3 10 10 C 1.53005 * 109.46747 * 170.00406 * 9 8 4 11 11 C 1.53010 * 109.46536 * 180.02562 * 10 9 8 12 12 F 1.39900 * 109.47056 * 60.00019 * 11 10 9 13 13 F 1.39900 * 109.46767 * 179.97438 * 11 10 9 14 14 F 1.39897 * 109.46922 * 299.99645 * 11 10 9 15 15 C 1.34780 * 120.00229 * 179.97438 * 2 1 3 16 16 O 1.21279 * 120.00031 * 180.02562 * 15 2 1 17 17 C 1.50699 * 119.99563 * 0.02562 * 15 2 1 18 18 S 1.81004 * 109.46896 * 179.97438 * 17 15 2 19 19 C 1.76205 * 99.99950 * 180.02562 * 18 17 15 20 20 H 1.07997 * 120.00211 * 359.97438 * 19 18 17 21 21 C 1.38799 * 119.99841 * 179.97438 * 19 18 17 22 22 N 1.31627 * 120.00169 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99783 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47512 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47031 * 120.00162 * 23 21 19 26 26 H 1.48506 * 109.46987 * 239.99996 * 23 21 19 27 27 H 1.09002 * 109.47391 * 270.00005 * 1 2 3 28 28 H 1.09001 * 109.46813 * 150.00061 * 1 2 3 29 29 H 1.09004 * 109.47041 * 30.00189 * 1 2 3 30 30 H 1.08993 * 109.47560 * 209.99542 * 3 2 1 31 31 H 1.09000 * 109.47209 * 330.00227 * 3 2 1 32 32 H 1.08997 * 113.73244 * 336.31776 * 6 4 3 33 33 H 1.08994 * 113.73324 * 107.60448 * 6 4 3 34 34 H 1.09002 * 113.76062 * 138.03538 * 7 6 4 35 35 H 1.09007 * 113.76009 * 269.29156 * 7 6 4 36 36 H 1.08998 * 109.47301 * 290.00156 * 9 8 4 37 37 H 1.08997 * 109.46993 * 50.00667 * 9 8 4 38 38 H 1.08998 * 109.47016 * 299.99924 * 10 9 8 39 39 H 1.08997 * 109.47161 * 60.00363 * 10 9 8 40 40 H 1.09004 * 109.47017 * 299.99442 * 17 15 2 41 41 H 1.09002 * 109.47507 * 59.99434 * 17 15 2 42 42 H 0.97001 * 120.00208 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 1.4426 5 1 1.5599 2.1005 1.9318 6 6 3.6920 2.6084 1.6063 7 6 3.9987 1.7859 2.8709 8 7 3.1872 0.7122 2.2505 9 6 2.3026 0.0808 3.2389 10 6 3.0209 -1.1085 3.8798 11 6 2.0993 -1.7665 4.9088 12 9 0.9347 -2.2119 4.2743 13 9 2.7557 -2.8543 5.4945 14 9 1.7646 -0.8355 5.8979 15 6 2.1389 -1.1672 0.0005 16 8 3.3517 -1.1672 0.0010 17 6 1.3854 -2.4723 0.0005 18 16 2.5616 -3.8480 0.0005 19 6 1.4415 -5.2082 -0.0003 20 1 0.3762 -5.0306 -0.0001 21 6 1.9283 -6.5081 -0.0010 22 7 3.2266 -6.7247 -0.0016 23 14 0.7408 -7.9500 -0.0011 24 1 -0.6547 -7.4422 0.0003 25 1 0.9660 -8.7766 -1.2140 26 1 0.9670 -8.7777 1.2110 27 1 -0.3634 0.0000 1.0277 28 1 -0.3633 -0.8900 -0.5138 29 1 -0.3633 0.8900 -0.5139 30 1 3.1499 1.1384 -0.5137 31 1 1.6085 2.0284 -0.5138 32 1 4.4302 2.4861 0.8137 33 1 3.4537 3.6524 1.8092 34 1 5.0525 1.5315 2.9844 35 1 3.5605 2.1981 3.7799 36 1 2.0423 0.8063 4.0095 37 1 1.3951 -0.2662 2.7449 38 1 3.2813 -1.8340 3.1092 39 1 3.9285 -0.7615 4.3738 40 1 0.7585 -2.5298 0.8904 41 1 0.7590 -2.5302 -0.8896 42 1 3.5668 -7.6331 -0.0025 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230814221.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:24:44 Heat of formation + Delta-G solvation = -152.644215 kcal Electronic energy + Delta-G solvation = -29082.557958 eV Core-core repulsion = 24582.206491 eV Total energy + Delta-G solvation = -4500.351467 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.117 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.95595 -47.48209 -47.39534 -40.44075 -38.76634 -35.12823 -33.72883 -32.38495 -30.40655 -28.70558 -27.95809 -26.23297 -25.42810 -24.34703 -23.41821 -21.79527 -19.82731 -19.10617 -18.42411 -18.29539 -17.59256 -17.23684 -16.52278 -16.23469 -15.77373 -15.73906 -14.98074 -14.76578 -14.46792 -14.36063 -14.21021 -13.87072 -13.83753 -13.72188 -13.57165 -13.54425 -13.13995 -12.91892 -12.80628 -12.58319 -12.35249 -12.27636 -12.05047 -11.92773 -11.63980 -11.48661 -11.17490 -11.03929 -10.96576 -10.87534 -10.72995 -10.71017 -9.74621 -9.15598 -9.03113 -8.95472 -8.32558 -8.16411 -6.44362 -6.17725 -3.87095 2.85070 3.01037 3.23997 3.25776 3.29562 3.33985 3.56746 3.73019 4.08165 4.16778 4.22297 4.24780 4.36113 4.58217 4.78683 4.91243 4.98192 5.05141 5.10767 5.16673 5.17939 5.24823 5.28319 5.35790 5.45978 5.50863 5.58556 5.63806 5.65540 5.73319 5.88909 5.91505 5.98655 6.05423 6.20433 6.25654 6.77132 6.92569 7.64067 7.68043 8.39796 8.76229 9.28276 10.89718 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.010422 B = 0.004491 C = 0.003555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2685.997758 B = 6233.186796 C = 7873.995423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.625 5.625 3 C 0.138 3.862 4 C 0.015 3.985 5 H 0.076 0.924 6 C -0.135 4.135 7 C -0.004 4.004 8 N -0.446 5.446 9 C 0.025 3.975 10 C -0.160 4.160 11 C 0.453 3.547 12 F -0.180 7.180 13 F -0.181 7.181 14 F -0.193 7.193 15 C 0.534 3.466 16 O -0.492 6.492 17 C -0.151 4.151 18 S -0.059 6.059 19 C -0.533 4.533 20 H 0.071 0.929 21 C 0.075 3.925 22 N -0.868 5.868 23 Si 0.915 3.085 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.280 1.280 27 H 0.047 0.953 28 H 0.074 0.926 29 H 0.065 0.935 30 H 0.090 0.910 31 H 0.075 0.925 32 H 0.095 0.905 33 H 0.071 0.929 34 H 0.090 0.910 35 H 0.067 0.933 36 H 0.049 0.951 37 H 0.082 0.918 38 H 0.129 0.871 39 H 0.104 0.896 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.092 20.493 6.216 21.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.362 5.362 3 C 0.014 3.986 4 C -0.096 4.096 5 H 0.094 0.906 6 C -0.173 4.173 7 C -0.132 4.132 8 N -0.168 5.168 9 C -0.104 4.104 10 C -0.198 4.198 11 C 0.399 3.601 12 F -0.161 7.161 13 F -0.162 7.162 14 F -0.175 7.175 15 C 0.321 3.679 16 O -0.364 6.364 17 C -0.302 4.302 18 S 0.168 5.832 19 C -0.681 4.681 20 H 0.089 0.911 21 C -0.135 4.135 22 N -0.503 5.503 23 Si 0.742 3.258 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.206 1.206 27 H 0.066 0.934 28 H 0.092 0.908 29 H 0.084 0.916 30 H 0.108 0.892 31 H 0.093 0.907 32 H 0.114 0.886 33 H 0.089 0.911 34 H 0.109 0.891 35 H 0.085 0.915 36 H 0.067 0.933 37 H 0.100 0.900 38 H 0.147 0.853 39 H 0.123 0.877 40 H 0.102 0.898 41 H 0.103 0.897 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.855 19.754 5.919 20.705 hybrid contribution -3.027 -0.546 0.826 3.185 sum -4.883 19.208 6.745 20.936 Atomic orbital electron populations 1.21745 0.80258 1.02981 1.01295 1.47765 1.06244 1.05718 1.76443 1.21305 0.98286 0.84908 0.94064 1.23919 0.96322 0.92513 0.96828 0.90621 1.23322 0.97484 0.97787 0.98707 1.24026 1.00844 0.92170 0.96190 1.68624 1.14724 1.19072 1.14366 1.22525 0.96851 0.95673 0.95329 1.22758 0.98052 1.00778 0.98235 1.20609 0.80706 0.77018 0.81802 1.93206 1.51340 1.89941 1.81646 1.93204 1.80757 1.56644 1.85639 1.93140 1.93371 1.65887 1.65080 1.20148 0.88029 0.84156 0.75596 1.90701 1.13271 1.86376 1.46045 1.23576 1.04551 0.97745 1.04312 1.85328 1.07987 0.93217 1.96646 1.22903 0.94354 0.92302 1.58571 0.91051 1.24958 0.95589 0.98306 0.94604 1.70023 1.11680 1.21468 1.47153 0.86168 0.80473 0.81298 0.77879 1.19638 1.20598 1.20582 0.93393 0.90757 0.91592 0.89185 0.90675 0.88641 0.91063 0.89115 0.91493 0.93304 0.89994 0.85281 0.87719 0.89755 0.89719 0.92311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.82 10.29 59.85 0.62 1.44 16 2 N -0.62 -8.34 2.83 -181.57 -0.51 -8.85 16 3 C 0.14 1.52 5.63 -4.04 -0.02 1.49 16 4 C 0.01 0.15 3.55 -66.65 -0.24 -0.09 16 5 H 0.08 0.66 7.92 -51.93 -0.41 0.25 16 6 C -0.13 -1.11 7.84 -25.79 -0.20 -1.31 16 7 C 0.00 -0.03 7.97 -2.64 -0.02 -0.05 16 8 N -0.45 -5.46 4.87 -229.66 -1.12 -6.58 16 9 C 0.03 0.31 4.56 -3.82 -0.02 0.29 16 10 C -0.16 -2.15 5.57 -26.72 -0.15 -2.30 16 11 C 0.45 6.46 3.16 37.16 0.12 6.58 16 12 F -0.18 -2.88 16.80 2.25 0.04 -2.84 16 13 F -0.18 -2.87 17.32 2.25 0.04 -2.83 16 14 F -0.19 -2.53 16.80 2.25 0.04 -2.49 16 15 C 0.53 9.76 7.23 -10.98 -0.08 9.68 16 16 O -0.49 -10.66 14.88 5.56 0.08 -10.57 16 17 C -0.15 -3.08 4.71 36.00 0.17 -2.91 16 18 S -0.06 -1.58 20.57 -107.50 -2.21 -3.79 16 19 C -0.53 -15.26 9.50 30.94 0.29 -14.97 16 20 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 21 C 0.07 2.14 5.49 -17.43 -0.10 2.04 16 22 N -0.87 -26.29 13.22 55.49 0.73 -25.56 16 23 Si 0.92 21.70 29.55 -169.99 -5.02 16.68 16 24 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 25 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 26 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.07 0.80 6.44 -51.93 -0.33 0.47 16 29 H 0.07 0.49 7.89 -51.93 -0.41 0.08 16 30 H 0.09 1.18 7.15 -51.93 -0.37 0.80 16 31 H 0.07 0.60 7.89 -51.93 -0.41 0.19 16 32 H 0.10 0.85 7.92 -51.93 -0.41 0.44 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.07 0.54 7.48 -51.93 -0.39 0.15 16 36 H 0.05 0.51 7.04 -51.93 -0.37 0.15 16 37 H 0.08 1.09 7.74 -51.93 -0.40 0.69 16 38 H 0.13 2.15 8.14 -51.93 -0.42 1.73 16 39 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.08 1.65 8.11 -51.91 -0.42 1.23 16 41 H 0.08 1.63 7.40 -51.91 -0.38 1.24 16 42 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 373.48 15.07 5.63 5.63 Total: -1.00 -34.07 373.48 -7.90 -41.98 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: -5.97 Total: -0.68 kcal Atomic # 6 Polarization: -0.47 SS G_CDS: 0.37 Total: -0.10 kcal Atomic # 7 Polarization: -40.09 SS G_CDS: -0.90 Total: -40.99 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: 0.08 Total: -10.57 kcal Atomic # 9 Polarization: -8.27 SS G_CDS: 0.11 Total: -8.16 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.07 -7.90 -41.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230814221.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.667 kcal (2) G-P(sol) polarization free energy of solvation -34.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds