Wall clock time and date at job start Tue Mar 31 2020 23:24:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46499 * 120.00225 * 2 1 4 4 C 1.53006 * 109.47075 * 89.99694 * 3 2 1 5 5 H 1.09004 * 112.95599 * 285.33106 * 4 3 2 6 6 C 1.53938 * 113.75818 * 153.69215 * 4 3 2 7 7 C 1.53936 * 86.33765 * 221.96205 * 6 4 3 8 8 N 1.47953 * 113.75729 * 56.98079 * 4 3 2 9 9 C 1.46901 * 111.00049 * 251.89807 * 8 4 3 10 10 C 1.53005 * 109.46747 * 170.00406 * 9 8 4 11 11 C 1.53010 * 109.46536 * 180.02562 * 10 9 8 12 12 F 1.39900 * 109.47056 * 60.00019 * 11 10 9 13 13 F 1.39900 * 109.46767 * 179.97438 * 11 10 9 14 14 F 1.39897 * 109.46922 * 299.99645 * 11 10 9 15 15 C 1.34780 * 120.00229 * 179.97438 * 2 1 3 16 16 O 1.21279 * 120.00031 * 180.02562 * 15 2 1 17 17 C 1.50699 * 119.99563 * 0.02562 * 15 2 1 18 18 S 1.81004 * 109.46896 * 179.97438 * 17 15 2 19 19 C 1.76205 * 99.99950 * 180.02562 * 18 17 15 20 20 H 1.07997 * 120.00211 * 359.97438 * 19 18 17 21 21 C 1.38799 * 119.99841 * 179.97438 * 19 18 17 22 22 N 1.31627 * 120.00169 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99783 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47512 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47031 * 120.00162 * 23 21 19 26 26 H 1.48506 * 109.46987 * 239.99996 * 23 21 19 27 27 H 1.09002 * 109.47391 * 270.00005 * 1 2 3 28 28 H 1.09001 * 109.46813 * 150.00061 * 1 2 3 29 29 H 1.09004 * 109.47041 * 30.00189 * 1 2 3 30 30 H 1.08993 * 109.47560 * 209.99542 * 3 2 1 31 31 H 1.09000 * 109.47209 * 330.00227 * 3 2 1 32 32 H 1.08997 * 113.73244 * 336.31776 * 6 4 3 33 33 H 1.08994 * 113.73324 * 107.60448 * 6 4 3 34 34 H 1.09002 * 113.76062 * 138.03538 * 7 6 4 35 35 H 1.09007 * 113.76009 * 269.29156 * 7 6 4 36 36 H 1.08998 * 109.47301 * 290.00156 * 9 8 4 37 37 H 1.08997 * 109.46993 * 50.00667 * 9 8 4 38 38 H 1.08998 * 109.47016 * 299.99924 * 10 9 8 39 39 H 1.08997 * 109.47161 * 60.00363 * 10 9 8 40 40 H 1.09004 * 109.47017 * 299.99442 * 17 15 2 41 41 H 1.09002 * 109.47507 * 59.99434 * 17 15 2 42 42 H 0.97001 * 120.00208 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 1.4426 5 1 1.5599 2.1005 1.9318 6 6 3.6920 2.6084 1.6063 7 6 3.9987 1.7859 2.8709 8 7 3.1872 0.7122 2.2505 9 6 2.3026 0.0808 3.2389 10 6 3.0209 -1.1085 3.8798 11 6 2.0993 -1.7665 4.9088 12 9 0.9347 -2.2119 4.2743 13 9 2.7557 -2.8543 5.4945 14 9 1.7646 -0.8355 5.8979 15 6 2.1389 -1.1672 0.0005 16 8 3.3517 -1.1672 0.0010 17 6 1.3854 -2.4723 0.0005 18 16 2.5616 -3.8480 0.0005 19 6 1.4415 -5.2082 -0.0003 20 1 0.3762 -5.0306 -0.0001 21 6 1.9283 -6.5081 -0.0010 22 7 3.2266 -6.7247 -0.0016 23 14 0.7408 -7.9500 -0.0011 24 1 -0.6547 -7.4422 0.0003 25 1 0.9660 -8.7766 -1.2140 26 1 0.9670 -8.7777 1.2110 27 1 -0.3634 0.0000 1.0277 28 1 -0.3633 -0.8900 -0.5138 29 1 -0.3633 0.8900 -0.5139 30 1 3.1499 1.1384 -0.5137 31 1 1.6085 2.0284 -0.5138 32 1 4.4302 2.4861 0.8137 33 1 3.4537 3.6524 1.8092 34 1 5.0525 1.5315 2.9844 35 1 3.5605 2.1981 3.7799 36 1 2.0423 0.8063 4.0095 37 1 1.3951 -0.2662 2.7449 38 1 3.2813 -1.8340 3.1092 39 1 3.9285 -0.7615 4.3738 40 1 0.7585 -2.5298 0.8904 41 1 0.7590 -2.5302 -0.8896 42 1 3.5668 -7.6331 -0.0025 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230814221.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:24:43 Heat of formation + Delta-G solvation = -175.137123 kcal Electronic energy + Delta-G solvation = -29083.533324 eV Core-core repulsion = 24582.206491 eV Total energy + Delta-G solvation = -4501.326833 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.117 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -51.15251 -48.65784 -48.63068 -41.35618 -39.98945 -36.34038 -34.72705 -34.57459 -31.67358 -29.73788 -29.03545 -27.66479 -27.15715 -25.36299 -24.33234 -22.83307 -20.75167 -20.36457 -19.60544 -19.49500 -19.43033 -18.35911 -17.86222 -17.26214 -16.93674 -16.86849 -16.67176 -16.13338 -15.83511 -15.56679 -15.54859 -15.17273 -15.06400 -14.82923 -14.79111 -14.69509 -14.50377 -14.19105 -14.07753 -13.73459 -13.39239 -13.29396 -13.18875 -13.10920 -13.04119 -12.92645 -12.68795 -12.50288 -12.35932 -12.04386 -11.71124 -11.66339 -11.53515 -11.15106 -10.62405 -10.22317 -9.82595 -9.34351 -8.62140 -8.34021 -6.09815 1.28327 1.39256 1.46973 1.58366 1.71631 1.83025 2.21734 2.29961 2.64301 2.96542 3.00067 3.04881 3.21297 3.33350 3.62332 3.80168 3.82572 3.86216 4.02714 4.24078 4.27548 4.29276 4.37187 4.38462 4.47468 4.49794 4.54288 4.66270 4.73113 4.80704 4.86161 4.95489 5.01991 5.02084 5.31980 5.42347 5.44542 5.78445 6.13545 6.20483 6.46172 7.07889 7.40353 8.75243 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.010422 B = 0.004491 C = 0.003555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2685.997758 B = 6233.186796 C = 7873.995423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.611 5.611 3 C 0.134 3.866 4 C 0.017 3.983 5 H 0.098 0.902 6 C -0.121 4.121 7 C -0.003 4.003 8 N -0.485 5.485 9 C 0.033 3.967 10 C -0.152 4.152 11 C 0.456 3.544 12 F -0.191 7.191 13 F -0.193 7.193 14 F -0.181 7.181 15 C 0.535 3.465 16 O -0.535 6.535 17 C -0.126 4.126 18 S -0.138 6.138 19 C -0.546 4.546 20 H 0.076 0.924 21 C 0.017 3.983 22 N -0.910 5.910 23 Si 0.992 3.008 24 H -0.258 1.258 25 H -0.272 1.272 26 H -0.275 1.275 27 H 0.059 0.941 28 H 0.066 0.934 29 H 0.104 0.896 30 H 0.063 0.937 31 H 0.116 0.884 32 H 0.083 0.917 33 H 0.101 0.899 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.071 0.929 37 H 0.067 0.933 38 H 0.089 0.911 39 H 0.121 0.879 40 H 0.091 0.909 41 H 0.097 0.903 42 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.415 22.725 6.559 24.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.346 5.346 3 C 0.011 3.989 4 C -0.093 4.093 5 H 0.116 0.884 6 C -0.159 4.159 7 C -0.132 4.132 8 N -0.207 5.207 9 C -0.096 4.096 10 C -0.191 4.191 11 C 0.401 3.599 12 F -0.173 7.173 13 F -0.175 7.175 14 F -0.163 7.163 15 C 0.322 3.678 16 O -0.411 6.411 17 C -0.277 4.277 18 S 0.089 5.911 19 C -0.693 4.693 20 H 0.095 0.905 21 C -0.188 4.188 22 N -0.547 5.547 23 Si 0.814 3.186 24 H -0.182 1.182 25 H -0.197 1.197 26 H -0.200 1.200 27 H 0.077 0.923 28 H 0.084 0.916 29 H 0.123 0.877 30 H 0.082 0.918 31 H 0.134 0.866 32 H 0.102 0.898 33 H 0.119 0.881 34 H 0.099 0.901 35 H 0.105 0.895 36 H 0.089 0.911 37 H 0.086 0.914 38 H 0.108 0.892 39 H 0.139 0.861 40 H 0.109 0.891 41 H 0.115 0.885 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.216 22.040 6.259 23.296 hybrid contribution -2.330 -1.102 0.728 2.678 sum -6.546 20.938 6.988 23.023 Atomic orbital electron populations 1.22021 0.77843 1.04547 1.02513 1.47697 1.07726 1.04944 1.74238 1.21572 0.97619 0.84288 0.95411 1.23990 0.97640 0.92074 0.95584 0.88399 1.23225 0.96151 0.98970 0.97547 1.24091 1.00124 0.91468 0.97472 1.68638 1.15846 1.20920 1.15341 1.22452 0.96008 0.95336 0.95777 1.22674 0.98850 1.00461 0.97085 1.20693 0.80345 0.76784 0.82044 1.93178 1.52042 1.90146 1.81942 1.93179 1.80976 1.57449 1.85864 1.93155 1.93265 1.65267 1.64604 1.19762 0.87355 0.84844 0.75864 1.90687 1.14888 1.86971 1.48543 1.23394 1.02815 0.96372 1.05141 1.85448 1.12074 0.96678 1.96900 1.23216 0.94567 0.93029 1.58533 0.90541 1.26035 0.97462 1.01475 0.93842 1.70176 1.13945 1.22315 1.48226 0.85005 0.78328 0.77114 0.78149 1.18221 1.19682 1.20025 0.92287 0.91571 0.87737 0.91806 0.86598 0.89833 0.88094 0.90077 0.89534 0.91094 0.91404 0.89189 0.86114 0.89055 0.88466 0.92051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.26 10.29 127.77 1.31 2.57 16 2 N -0.61 -15.26 2.83 -846.75 -2.40 -17.65 16 3 C 0.13 2.61 5.63 86.38 0.49 3.10 16 4 C 0.02 0.29 3.55 45.02 0.16 0.45 16 5 H 0.10 1.26 7.92 -2.38 -0.02 1.24 16 6 C -0.12 -1.66 7.84 31.24 0.25 -1.41 16 7 C 0.00 -0.05 7.97 86.36 0.69 0.63 16 8 N -0.48 -11.33 4.87 -880.53 -4.29 -15.61 16 9 C 0.03 0.77 4.56 86.30 0.39 1.16 16 10 C -0.15 -4.16 5.57 30.60 0.17 -3.99 16 11 C 0.46 13.04 3.16 71.99 0.23 13.26 16 12 F -0.19 -6.19 16.80 44.97 0.76 -5.43 16 13 F -0.19 -6.26 17.32 44.97 0.78 -5.48 16 14 F -0.18 -4.51 16.80 44.97 0.76 -3.75 16 15 C 0.54 19.74 7.23 87.66 0.63 20.37 16 16 O -0.54 -24.07 14.88 -3.02 -0.04 -24.12 16 17 C -0.13 -5.20 4.71 71.24 0.34 -4.86 16 18 S -0.14 -7.77 20.57 -56.49 -1.16 -8.93 16 19 C -0.55 -31.88 9.50 67.95 0.65 -31.24 16 20 H 0.08 4.22 7.80 -2.91 -0.02 4.20 16 21 C 0.02 0.97 5.49 84.86 0.47 1.44 16 22 N -0.91 -56.71 13.22 21.65 0.29 -56.42 16 23 Si 0.99 44.74 29.55 68.60 2.03 46.77 16 24 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 25 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 26 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 27 H 0.06 0.93 8.14 -2.39 -0.02 0.92 16 28 H 0.07 1.27 6.44 -2.39 -0.02 1.26 16 29 H 0.10 1.05 7.89 -2.38 -0.02 1.03 16 30 H 0.06 1.62 7.15 -2.39 -0.02 1.61 16 31 H 0.12 1.34 7.89 -2.39 -0.02 1.32 16 32 H 0.08 1.37 7.92 -2.39 -0.02 1.35 16 33 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.09 1.11 7.48 -2.38 -0.02 1.09 16 36 H 0.07 1.30 7.04 -2.39 -0.02 1.28 16 37 H 0.07 1.73 7.74 -2.39 -0.02 1.72 16 38 H 0.09 3.23 8.14 -2.39 -0.02 3.21 16 39 H 0.12 2.82 8.14 -2.39 -0.02 2.80 16 40 H 0.09 3.60 8.11 -2.39 -0.02 3.58 16 41 H 0.10 3.72 7.40 -2.39 -0.02 3.71 16 42 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 Total: -1.00 -77.94 373.48 3.51 -74.43 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: 1.03 Total: 14.72 kcal Atomic # 6 Polarization: -4.28 SS G_CDS: 5.77 Total: 1.49 kcal Atomic # 7 Polarization: -83.29 SS G_CDS: -6.40 Total: -89.69 kcal Atomic # 8 Polarization: -24.07 SS G_CDS: -0.04 Total: -24.12 kcal Atomic # 9 Polarization: -16.95 SS G_CDS: 2.29 Total: -14.66 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Atomic # 16 Polarization: -7.77 SS G_CDS: -1.16 Total: -8.93 kcal Total: -77.94 3.51 -74.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230814221.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.705 kcal (2) G-P(sol) polarization free energy of solvation -77.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds