Wall clock time and date at job start Tue Mar 31 2020 23:17:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35607 * 117.00368 * 2 1 4 4 C 1.38522 * 120.08027 * 359.97438 * 3 2 1 5 5 C 1.38023 * 120.31135 * 180.02562 * 4 3 2 6 6 C 1.39950 * 120.46931 * 0.02562 * 5 4 3 7 7 C 1.48350 * 119.92385 * 179.97438 * 6 5 4 8 8 C 1.39241 * 120.46399 * 179.72177 * 7 6 5 9 9 N 1.31827 * 120.91693 * 179.67559 * 8 7 6 10 10 C 1.32282 * 121.75283 * 0.60190 * 9 8 7 11 11 C 1.39682 * 120.62294 * 359.73945 * 10 9 8 12 12 C 1.38281 * 119.45939 * 359.92820 * 11 10 9 13 13 O 1.35870 * 119.75837 * 179.83490 * 11 10 9 14 14 C 1.43052 * 116.63104 * 327.37570 * 13 11 10 15 15 C 1.50747 * 109.53124 * 46.10900 * 14 13 11 16 16 O 1.21282 * 120.06090 * 148.75191 * 15 14 13 17 17 N 1.35003 * 119.87432 * 328.77954 * 15 14 13 18 18 C 1.46503 * 120.41966 * 181.61969 * 17 15 14 19 19 C 1.38632 * 120.15481 * 359.69393 * 6 5 4 20 20 C 1.40512 * 119.68584 * 0.55418 * 19 6 5 21 21 C 1.41189 * 120.22935 * 179.74605 * 20 19 6 22 22 H 1.07997 * 120.00130 * 154.36807 * 21 20 19 23 23 C 1.39900 * 119.99886 * 334.64822 * 21 20 19 24 24 N 1.30888 * 119.99772 * 342.66137 * 23 21 20 25 25 Si 1.86792 * 120.00107 * 162.66163 * 23 21 20 26 26 H 1.48495 * 109.47521 * 59.99891 * 25 23 21 27 27 H 1.48505 * 109.47178 * 180.02562 * 25 23 21 28 28 H 1.48504 * 109.47116 * 299.99839 * 25 23 21 29 29 H 1.08998 * 109.47072 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46887 * 300.00187 * 1 2 3 31 31 H 1.08996 * 109.47047 * 60.00070 * 1 2 3 32 32 H 1.08006 * 119.84474 * 0.04598 * 4 3 2 33 33 H 1.07993 * 119.76915 * 179.97438 * 5 4 3 34 34 H 1.07994 * 119.54248 * 359.95113 * 8 7 6 35 35 H 1.07998 * 120.91051 * 180.02562 * 12 11 10 36 36 H 1.08994 * 109.46512 * 286.08794 * 14 13 11 37 37 H 1.09000 * 109.44450 * 166.12126 * 14 13 11 38 38 H 1.09001 * 109.47381 * 269.98152 * 18 17 15 39 39 H 1.08996 * 109.46860 * 29.98371 * 18 17 15 40 40 H 1.09005 * 109.46839 * 149.98071 * 18 17 15 41 41 H 1.07999 * 120.15903 * 180.28191 * 19 6 5 42 42 H 0.96998 * 119.99510 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2082 0.0000 4 6 1.2920 2.3711 -0.0005 5 6 1.9137 3.6033 -0.0011 6 6 3.3103 3.6936 -0.0016 7 6 3.9659 5.0244 -0.0028 8 6 5.3545 5.1272 0.0025 9 7 5.9465 6.3051 -0.0049 10 6 5.2540 7.4322 -0.0057 11 6 3.8574 7.4092 -0.0041 12 6 3.1972 6.1942 -0.0032 13 8 3.1637 8.5775 -0.0016 14 6 3.7632 9.6777 0.6888 15 6 5.2175 9.7808 0.3059 16 8 5.7636 10.8634 0.2798 17 7 5.9108 8.6659 -0.0085 18 6 7.3336 8.7481 -0.3480 19 6 4.0826 2.5423 0.0048 20 6 3.4565 1.2844 0.0000 21 6 4.2318 0.1044 0.0010 22 1 3.8220 -0.8107 0.4023 23 6 5.5331 0.1221 -0.5125 24 7 5.9170 1.1035 -1.2888 25 14 6.7225 -1.2549 -0.0902 26 1 6.1685 -2.5495 -0.5614 27 1 8.0269 -1.0032 -0.7540 28 1 6.9181 -1.3063 1.3810 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 0.2135 2.3132 -0.0002 33 1 1.3183 4.5043 -0.0019 34 1 5.9549 4.2296 0.0083 35 1 2.1182 6.1491 -0.0025 36 1 3.6811 9.5199 1.7641 37 1 3.2497 10.5999 0.4168 38 1 7.4429 8.8959 -1.4224 39 1 7.7856 9.5865 0.1819 40 1 7.8308 7.8230 -0.0560 41 1 5.1603 2.6119 0.0089 42 1 6.8193 1.1159 -1.6445 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240870654.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:17:18 Heat of formation + Delta-G solvation = -33.990571 kcal Electronic energy + Delta-G solvation = -28600.749586 eV Core-core repulsion = 24511.956116 eV Total energy + Delta-G solvation = -4088.793470 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.65858 -39.51797 -38.74605 -38.07218 -36.55637 -35.55646 -33.90319 -32.14575 -30.88678 -29.97613 -29.35361 -28.00973 -26.64857 -26.17531 -25.36461 -23.76744 -23.06344 -20.96628 -20.82134 -19.68104 -18.89238 -17.63195 -17.46354 -17.18011 -16.62621 -16.10704 -15.56815 -15.36042 -15.21492 -14.84548 -14.76304 -14.69112 -14.56622 -14.09447 -13.79096 -13.29856 -13.19918 -12.81342 -12.73888 -12.60665 -12.37725 -12.21748 -11.93646 -11.71197 -11.46322 -11.39199 -11.17159 -10.95431 -10.76073 -10.56142 -10.41701 -10.20715 -9.95992 -9.63505 -9.34385 -9.31614 -9.14678 -8.11693 -7.66325 -6.94969 -6.71586 -4.37827 0.84845 1.31464 2.03736 2.34916 2.65133 2.82975 3.05167 3.07299 3.10101 3.14196 3.69089 3.89429 3.96625 4.36024 4.47070 4.55925 4.68726 4.81164 4.89351 5.20198 5.25151 5.35595 5.39113 5.43867 5.49276 5.65578 5.70383 5.72981 5.73365 5.89950 6.04465 6.05577 6.14399 6.32546 6.49372 6.63323 6.70656 6.97264 7.12095 7.15340 7.18833 7.47285 7.50587 7.53326 7.76320 7.97146 8.05939 8.21841 8.54214 8.70177 8.89531 10.10359 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.013486 B = 0.003198 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2075.715455 B = 8752.447044 C =10708.031077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.310 6.310 3 C 0.028 3.972 4 C -0.179 4.179 5 C -0.187 4.187 6 C -0.072 4.072 7 C -0.035 4.035 8 C 0.113 3.887 9 N -0.475 5.475 10 C 0.272 3.728 11 C 0.037 3.963 12 C -0.077 4.077 13 O -0.300 6.300 14 C 0.051 3.949 15 C 0.492 3.508 16 O -0.515 6.515 17 N -0.537 5.537 18 C 0.083 3.917 19 C -0.121 4.121 20 C 0.095 3.905 21 C -0.444 4.444 22 H 0.084 0.916 23 C 0.075 3.925 24 N -0.797 5.797 25 Si 0.910 3.090 26 H -0.265 1.265 27 H -0.278 1.278 28 H -0.263 1.263 29 H 0.083 0.917 30 H 0.041 0.959 31 H 0.042 0.958 32 H 0.101 0.899 33 H 0.097 0.903 34 H 0.176 0.824 35 H 0.151 0.849 36 H 0.099 0.901 37 H 0.145 0.855 38 H 0.062 0.938 39 H 0.079 0.921 40 H 0.093 0.907 41 H 0.133 0.867 42 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.944 8.869 2.882 9.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.224 6.224 3 C -0.017 4.017 4 C -0.198 4.198 5 C -0.207 4.207 6 C -0.073 4.073 7 C -0.038 4.038 8 C -0.045 4.045 9 N -0.189 5.189 10 C 0.043 3.957 11 C -0.011 4.011 12 C -0.103 4.103 13 O -0.213 6.213 14 C -0.027 4.027 15 C 0.279 3.721 16 O -0.390 6.390 17 N -0.265 5.265 18 C -0.059 4.059 19 C -0.140 4.140 20 C 0.092 3.908 21 C -0.473 4.473 22 H 0.102 0.898 23 C -0.143 4.143 24 N -0.422 5.422 25 Si 0.734 3.266 26 H -0.190 1.190 27 H -0.203 1.203 28 H -0.188 1.188 29 H 0.101 0.899 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.119 0.881 33 H 0.115 0.885 34 H 0.193 0.807 35 H 0.168 0.832 36 H 0.116 0.884 37 H 0.163 0.837 38 H 0.081 0.919 39 H 0.098 0.902 40 H 0.112 0.888 41 H 0.150 0.850 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.579 9.530 2.622 10.010 hybrid contribution -0.408 -0.417 0.067 0.587 sum -1.987 9.113 2.689 9.707 Atomic orbital electron populations 1.22772 0.81476 1.01962 1.00061 1.85972 1.18441 1.28178 1.89787 1.19400 0.92436 0.82729 1.07120 1.20556 0.97664 0.92624 1.08961 1.20145 0.92804 0.95615 1.12109 1.18133 0.92937 0.89719 1.06541 1.19892 0.93503 0.93613 0.96754 1.22850 0.92316 0.93546 0.95782 1.66905 1.39936 0.97158 1.14860 1.18495 0.87165 0.86574 1.03495 1.19208 0.88558 0.87129 1.06225 1.21061 1.01405 0.88082 0.99765 1.86223 1.45623 1.17274 1.72182 1.23213 0.89189 0.91262 0.99043 1.21523 0.89922 0.83526 0.77098 1.90751 1.71034 1.26088 1.51119 1.45402 1.11964 1.04379 1.64719 1.21804 0.78553 1.04331 1.01166 1.21201 0.99468 0.89577 1.03788 1.16936 0.87302 0.93858 0.92710 1.19397 0.96772 0.96691 1.34439 0.89803 1.25881 0.98782 0.97023 0.92592 1.69794 1.19452 1.30853 1.22143 0.86330 0.78889 0.81426 0.79954 1.18984 1.20304 1.18778 0.89884 0.94072 0.93974 0.88126 0.88532 0.80740 0.83158 0.88356 0.83701 0.91906 0.90223 0.88797 0.85000 0.90600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 9.81 101.05 0.99 1.51 16 2 O -0.31 -6.66 9.77 -18.52 -0.18 -6.84 16 3 C 0.03 0.64 6.72 -38.28 -0.26 0.38 16 4 C -0.18 -3.63 9.01 -39.56 -0.36 -3.99 16 5 C -0.19 -3.68 9.43 -39.02 -0.37 -4.05 16 6 C -0.07 -1.48 5.87 -104.95 -0.62 -2.10 16 7 C -0.03 -0.62 5.89 -104.71 -0.62 -1.24 16 8 C 0.11 1.99 10.58 -17.18 -0.18 1.80 16 9 N -0.47 -8.01 9.22 -11.86 -0.11 -8.12 16 10 C 0.27 4.32 7.26 -154.17 -1.12 3.20 16 11 C 0.04 0.57 6.44 -39.03 -0.25 0.32 16 12 C -0.08 -1.23 9.48 -38.91 -0.37 -1.60 16 13 O -0.30 -3.99 10.46 -19.33 -0.20 -4.19 16 14 C 0.05 0.54 7.18 36.03 0.26 0.80 16 15 C 0.49 6.68 7.66 -10.86 -0.08 6.59 16 16 O -0.52 -7.94 16.75 5.56 0.09 -7.85 16 17 N -0.54 -7.77 3.10 -122.39 -0.38 -8.15 16 18 C 0.08 1.03 10.34 59.85 0.62 1.65 16 19 C -0.12 -2.78 8.06 -38.58 -0.31 -3.09 16 20 C 0.09 2.34 5.57 -106.73 -0.59 1.74 16 21 C -0.44 -11.13 8.71 -37.84 -0.33 -11.46 16 22 H 0.08 2.10 7.65 -52.49 -0.40 1.70 16 23 C 0.07 1.75 5.14 -17.33 -0.09 1.66 16 24 N -0.80 -18.95 10.98 55.55 0.61 -18.34 16 25 Si 0.91 17.83 29.59 -169.99 -5.03 12.80 16 26 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 27 H -0.28 -5.31 7.11 56.52 0.40 -4.91 16 28 H -0.26 -5.13 7.11 56.52 0.40 -4.72 16 29 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.04 0.58 7.66 -51.93 -0.40 0.19 16 31 H 0.04 0.61 7.65 -51.93 -0.40 0.22 16 32 H 0.10 1.76 6.27 -52.48 -0.33 1.43 16 33 H 0.10 1.63 6.24 -52.49 -0.33 1.30 16 34 H 0.18 3.10 6.19 -52.49 -0.32 2.78 16 35 H 0.15 2.14 6.30 -52.49 -0.33 1.81 16 36 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.15 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.08 0.92 7.48 -51.93 -0.39 0.53 16 40 H 0.09 1.16 7.31 -51.93 -0.38 0.78 16 41 H 0.13 3.04 4.33 -52.49 -0.23 2.81 16 42 H 0.28 6.19 8.30 -40.82 -0.34 5.85 16 LS Contribution 352.29 15.07 5.31 5.31 Total: -1.00 -28.38 352.29 -7.89 -36.27 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -4.33 Total: 6.97 kcal Atomic # 6 Polarization: -4.19 SS G_CDS: -3.68 Total: -7.87 kcal Atomic # 7 Polarization: -34.73 SS G_CDS: 0.12 Total: -34.61 kcal Atomic # 8 Polarization: -18.59 SS G_CDS: -0.29 Total: -18.88 kcal Atomic # 14 Polarization: 17.83 SS G_CDS: -5.03 Total: 12.80 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -28.38 -7.89 -36.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240870654.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.284 kcal (2) G-P(sol) polarization free energy of solvation -28.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds