Wall clock time and date at job start Tue Mar 31 2020 23:17:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35879 * 116.99914 * 2 1 4 4 C 1.39506 * 119.77223 * 0.29808 * 3 2 1 5 5 C 1.37887 * 120.62420 * 180.25847 * 4 3 2 6 6 C 1.39240 * 120.16037 * 359.44207 * 5 4 3 7 7 C 1.47740 * 120.22605 * 180.25985 * 6 5 4 8 8 C 1.39647 * 120.50195 * 130.00324 * 7 6 5 9 9 N 1.31715 * 120.87347 * 179.97438 * 8 7 6 10 10 C 1.32365 * 121.79551 * 0.02562 * 9 8 7 11 11 C 1.39837 * 120.67005 * 0.04255 * 10 9 8 12 12 C 1.38133 * 119.49677 * 359.65403 * 11 10 9 13 13 O 1.35881 * 119.74953 * 179.81911 * 11 10 9 14 14 C 1.43042 * 116.61849 * 327.44580 * 13 11 10 15 15 C 1.50750 * 109.52744 * 46.07956 * 14 13 11 16 16 O 1.21281 * 120.05040 * 148.73023 * 15 14 13 17 17 N 1.34988 * 119.89269 * 328.75222 * 15 14 13 18 18 C 1.46499 * 120.40906 * 181.62367 * 17 15 14 19 19 C 1.41941 * 119.54797 * 0.27867 * 6 5 4 20 20 C 1.40856 * 120.30607 * 180.02562 * 19 6 5 21 21 H 1.07998 * 119.99521 * 333.49654 * 20 19 6 22 22 C 1.40009 * 119.99936 * 153.50309 * 20 19 6 23 23 N 1.30806 * 120.00089 * 344.22421 * 22 20 19 24 24 Si 1.86803 * 119.99842 * 164.22408 * 22 20 19 25 25 H 1.48501 * 109.47039 * 359.97438 * 24 22 20 26 26 H 1.48496 * 109.47248 * 119.99756 * 24 22 20 27 27 H 1.48500 * 109.47106 * 240.00141 * 24 22 20 28 28 C 1.37885 * 119.77192 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.47057 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47485 * 299.99432 * 1 2 3 31 31 H 1.09001 * 109.47034 * 60.00151 * 1 2 3 32 32 H 1.08002 * 119.68888 * 359.97422 * 4 3 2 33 33 H 1.07999 * 119.91848 * 179.72044 * 5 4 3 34 34 H 1.08000 * 119.56206 * 359.94118 * 8 7 6 35 35 H 1.08002 * 120.91649 * 180.35362 * 12 11 10 36 36 H 1.09007 * 109.45559 * 166.09503 * 14 13 11 37 37 H 1.08997 * 109.46620 * 286.05931 * 14 13 11 38 38 H 1.08996 * 109.47612 * 269.98084 * 18 17 15 39 39 H 1.09005 * 109.46500 * 29.98004 * 18 17 15 40 40 H 1.08999 * 109.47033 * 149.97290 * 18 17 15 41 41 H 0.97001 * 119.99537 * 179.97438 * 23 22 20 42 42 H 1.07998 * 120.08907 * 0.04521 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2107 0.0000 4 6 1.2814 2.3776 0.0063 5 6 1.8890 3.6154 0.0011 6 6 3.2780 3.7129 0.0011 7 6 3.9305 5.0384 0.0013 8 6 4.9375 5.3326 0.9230 9 7 5.5245 6.5117 0.9294 10 6 5.1896 7.4621 0.0712 11 6 4.1892 7.2432 -0.8810 12 6 3.5511 6.0190 -0.9280 13 8 3.8577 8.2333 -1.7506 14 6 3.9667 9.5748 -1.2662 15 6 5.2811 9.7461 -0.5482 16 8 5.8417 10.8215 -0.5559 17 7 5.8333 8.7004 0.1028 18 6 7.0924 8.8632 0.8339 19 6 4.0627 2.5301 0.0005 20 6 5.4690 2.6102 0.0011 21 1 5.9606 3.4768 -0.4155 22 6 6.2294 1.5661 0.5416 23 7 5.6617 0.6746 1.3123 24 14 8.0545 1.4464 0.1622 25 1 8.4498 2.5680 -0.7272 26 1 8.8290 1.5205 1.4270 27 1 8.3355 0.1553 -0.5156 28 6 3.4231 1.2774 0.0005 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 0.2035 2.3110 0.0107 33 1 1.2861 4.5114 0.0015 34 1 5.2386 4.5835 1.6404 35 1 2.7792 5.8232 -1.6576 36 1 3.9180 10.2689 -2.1053 37 1 3.1472 9.7800 -0.5774 38 1 7.9291 8.6526 0.1680 39 1 7.1692 9.8865 1.2016 40 1 7.1154 8.1718 1.6763 41 1 6.1885 -0.0489 1.6864 42 1 4.0091 0.3702 0.0002 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240871246.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:17:21 Heat of formation + Delta-G solvation = -54.309941 kcal Electronic energy + Delta-G solvation = -28939.524458 eV Core-core repulsion = 24849.849875 eV Total energy + Delta-G solvation = -4089.674584 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.70663 -40.75335 -40.20959 -39.15374 -38.15159 -36.74944 -35.45619 -33.41307 -32.12542 -31.48866 -30.30850 -29.72404 -27.87260 -27.19182 -27.00367 -24.93660 -24.14340 -22.75578 -22.13196 -20.86390 -19.95297 -19.48176 -18.56812 -18.30611 -17.91988 -17.23657 -16.88846 -16.65769 -16.51986 -16.30979 -16.25041 -16.00125 -15.69997 -15.26884 -14.95315 -14.76504 -14.46185 -14.28206 -14.05194 -13.75959 -13.67568 -13.50441 -13.20958 -13.08303 -12.84801 -12.79027 -12.67112 -12.57615 -12.16917 -11.84504 -11.76942 -11.46614 -11.38657 -11.21742 -10.99178 -10.55340 -10.35556 -9.37867 -9.13364 -8.74273 -8.37623 -6.36173 -0.21410 0.20272 0.90030 1.02116 1.28912 1.35320 1.39844 1.50494 1.52195 2.12599 2.18927 2.67379 2.72342 2.80283 2.81589 3.35205 3.69767 3.75502 3.95167 4.06475 4.13753 4.25883 4.33763 4.40045 4.43046 4.49805 4.51452 4.56470 4.58217 4.70554 4.77518 4.80316 4.99130 5.07611 5.14222 5.24749 5.34581 5.44153 5.54278 5.66125 5.90845 5.93511 6.10120 6.12567 6.16257 6.47057 6.49462 6.87753 6.91000 6.92745 7.05765 8.28754 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011395 B = 0.003838 C = 0.002990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2456.553594 B = 7292.979157 C = 9361.114520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.352 6.352 3 C 0.132 3.868 4 C -0.311 4.311 5 C -0.033 4.033 6 C -0.213 4.213 7 C -0.020 4.020 8 C 0.120 3.880 9 N -0.490 5.490 10 C 0.265 3.735 11 C 0.041 3.959 12 C -0.077 4.077 13 O -0.301 6.301 14 C 0.052 3.948 15 C 0.488 3.512 16 O -0.538 6.538 17 N -0.544 5.544 18 C 0.081 3.919 19 C 0.138 3.862 20 C -0.467 4.467 21 H 0.079 0.921 22 C 0.046 3.954 23 N -0.807 5.807 24 Si 0.964 3.036 25 H -0.263 1.263 26 H -0.265 1.265 27 H -0.266 1.266 28 C -0.226 4.226 29 H 0.113 0.887 30 H 0.055 0.945 31 H 0.059 0.941 32 H 0.129 0.871 33 H 0.128 0.872 34 H 0.158 0.842 35 H 0.163 0.837 36 H 0.177 0.823 37 H 0.126 0.874 38 H 0.065 0.935 39 H 0.088 0.912 40 H 0.090 0.910 41 H 0.289 0.711 42 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.385 9.081 -2.347 10.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.266 6.266 3 C 0.087 3.913 4 C -0.331 4.331 5 C -0.051 4.051 6 C -0.216 4.216 7 C -0.023 4.023 8 C -0.038 4.038 9 N -0.204 5.204 10 C 0.035 3.965 11 C -0.008 4.008 12 C -0.103 4.103 13 O -0.214 6.214 14 C -0.025 4.025 15 C 0.278 3.722 16 O -0.414 6.414 17 N -0.272 5.272 18 C -0.060 4.060 19 C 0.135 3.865 20 C -0.496 4.496 21 H 0.097 0.903 22 C -0.172 4.172 23 N -0.431 5.431 24 Si 0.786 3.214 25 H -0.187 1.187 26 H -0.190 1.190 27 H -0.191 1.191 28 C -0.246 4.246 29 H 0.131 0.869 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.147 0.853 33 H 0.146 0.854 34 H 0.175 0.825 35 H 0.180 0.820 36 H 0.195 0.805 37 H 0.143 0.857 38 H 0.084 0.916 39 H 0.106 0.894 40 H 0.109 0.891 41 H 0.100 0.900 42 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -4.325 9.519 -1.788 10.607 hybrid contribution 0.354 -0.596 -0.193 0.720 sum -3.971 8.922 -1.981 9.965 Atomic orbital electron populations 1.23152 0.77555 1.04496 1.01636 1.85984 1.22827 1.28471 1.89362 1.19171 0.92198 0.84000 0.95882 1.20717 0.98974 0.91690 1.21703 1.20700 0.92741 0.96637 0.95068 1.18462 0.92856 0.90217 1.20019 1.19489 0.95515 0.93311 0.94007 1.22708 0.92429 0.90870 0.97778 1.66852 1.28886 1.01716 1.22963 1.18677 0.94248 0.88025 0.95522 1.19159 0.97000 0.91457 0.93182 1.21237 0.99935 0.90156 0.98954 1.86223 1.84752 1.13660 1.36789 1.23570 0.92943 0.82817 1.03201 1.22118 0.88864 0.82824 0.78434 1.90736 1.63769 1.25818 1.61098 1.45550 1.24167 1.07145 1.50320 1.21857 0.82896 1.03917 0.97326 1.17448 0.93226 0.89598 0.86227 1.19630 0.91363 1.03990 1.34576 0.90314 1.26585 1.04784 0.93691 0.92146 1.69873 1.40074 1.11593 1.21588 0.85404 0.77404 0.79262 0.79314 1.18671 1.18951 1.19102 1.20458 0.90589 0.98551 1.15011 0.86872 0.92616 0.92234 0.85297 0.85388 0.82469 0.81986 0.80540 0.85678 0.91608 0.89384 0.89101 0.89977 0.88039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.71 9.80 113.37 1.11 1.83 16 2 O -0.35 -14.29 10.48 -92.18 -0.97 -15.26 16 3 C 0.13 5.90 6.67 22.49 0.15 6.05 16 4 C -0.31 -12.03 9.02 22.49 0.20 -11.83 16 5 C -0.03 -1.26 9.51 22.43 0.21 -1.05 16 6 C -0.21 -9.04 5.55 -19.61 -0.11 -9.15 16 7 C -0.02 -0.76 4.93 -19.92 -0.10 -0.86 16 8 C 0.12 4.62 9.16 85.05 0.78 5.40 16 9 N -0.49 -17.68 9.21 -191.14 -1.76 -19.44 16 10 C 0.26 8.66 7.26 133.04 0.97 9.62 16 11 C 0.04 1.25 6.44 22.63 0.15 1.39 16 12 C -0.08 -2.47 9.64 22.75 0.22 -2.25 16 13 O -0.30 -7.62 10.46 -92.21 -0.96 -8.59 16 14 C 0.05 0.98 7.18 71.25 0.51 1.49 16 15 C 0.49 12.95 7.66 87.64 0.67 13.62 16 16 O -0.54 -16.29 16.75 -3.03 -0.05 -16.35 16 17 N -0.54 -15.99 3.10 -659.37 -2.04 -18.03 16 18 C 0.08 2.10 10.33 127.77 1.32 3.42 16 19 C 0.14 6.74 5.56 -21.13 -0.12 6.62 16 20 C -0.47 -22.81 7.12 23.34 0.17 -22.64 16 21 H 0.08 3.82 6.61 -2.91 -0.02 3.80 16 22 C 0.05 2.15 5.17 85.28 0.44 2.60 16 23 N -0.81 -39.97 10.96 21.84 0.24 -39.73 16 24 Si 0.96 37.04 29.59 68.60 2.03 39.07 16 25 H -0.26 -10.16 7.11 99.48 0.71 -9.46 16 26 H -0.26 -9.79 7.11 99.48 0.71 -9.09 16 27 H -0.27 -9.97 7.11 99.48 0.71 -9.26 16 28 C -0.23 -11.41 8.59 22.78 0.20 -11.21 16 29 H 0.11 2.38 8.14 -2.39 -0.02 2.36 16 30 H 0.06 1.41 7.63 -2.39 -0.02 1.40 16 31 H 0.06 1.46 7.66 -2.39 -0.02 1.44 16 32 H 0.13 4.11 6.25 -2.91 -0.02 4.09 16 33 H 0.13 3.95 8.05 -2.91 -0.02 3.92 16 34 H 0.16 6.53 7.30 -2.91 -0.02 6.51 16 35 H 0.16 4.55 8.06 -2.91 -0.02 4.52 16 36 H 0.18 2.21 8.14 -2.38 -0.02 2.19 16 37 H 0.13 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.09 2.08 7.48 -2.38 -0.02 2.06 16 40 H 0.09 2.39 7.30 -2.39 -0.02 2.37 16 41 H 0.29 13.07 8.30 -92.71 -0.77 12.31 16 42 H 0.10 5.57 6.23 -2.91 -0.02 5.55 16 Total: -1.00 -61.52 354.87 4.33 -57.19 By element: Atomic # 1 Polarization: 27.00 SS G_CDS: 1.08 Total: 28.08 kcal Atomic # 6 Polarization: -13.72 SS G_CDS: 6.77 Total: -6.95 kcal Atomic # 7 Polarization: -73.63 SS G_CDS: -3.56 Total: -77.20 kcal Atomic # 8 Polarization: -38.21 SS G_CDS: -1.98 Total: -40.19 kcal Atomic # 14 Polarization: 37.04 SS G_CDS: 2.03 Total: 39.07 kcal Total: -61.52 4.33 -57.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240871246.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.881 kcal (2) G-P(sol) polarization free energy of solvation -61.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds