Wall clock time and date at job start Tue Mar 31 2020 23:45:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34231 * 116.99874 * 2 1 4 4 O 1.20827 * 119.99992 * 359.97438 * 3 2 1 5 5 C 1.50703 * 119.99924 * 179.97438 * 3 2 1 6 6 N 1.46502 * 109.46822 * 179.97438 * 5 3 2 7 7 C 1.34776 * 119.99764 * 179.97438 * 6 5 3 8 8 O 1.21559 * 120.00088 * 0.02562 * 7 6 5 9 9 C 1.47797 * 120.00276 * 180.02562 * 7 6 5 10 10 C 1.39668 * 120.02164 * 179.97438 * 9 7 6 11 11 C 1.37705 * 119.97870 * 180.02562 * 10 9 7 12 12 C 1.39506 * 120.02190 * 0.02562 * 11 10 9 13 13 C 1.48273 * 119.98190 * 179.97438 * 12 11 10 14 14 C 1.39896 * 119.61170 * 165.83945 * 13 12 11 15 15 C 1.38703 * 119.46430 * 180.02562 * 14 13 12 16 16 C 1.38275 * 118.69124 * 0.24793 * 15 14 13 17 17 C 1.40717 * 119.18223 * 359.51154 * 16 15 14 18 18 C 1.41386 * 119.76838 * 180.24651 * 17 16 15 19 19 H 1.08006 * 120.00064 * 338.70453 * 18 17 16 20 20 C 1.40019 * 120.00531 * 158.69651 * 18 17 16 21 21 N 1.30738 * 120.00430 * 167.85837 * 20 18 17 22 22 Si 1.86805 * 119.99699 * 347.86000 * 20 18 17 23 23 H 1.48508 * 109.47116 * 86.27730 * 22 20 18 24 24 H 1.48499 * 109.47204 * 206.27606 * 22 20 18 25 25 H 1.48501 * 109.47177 * 326.27618 * 22 20 18 26 26 N 1.32237 * 119.60830 * 345.85975 * 13 12 11 27 27 C 1.39501 * 120.03777 * 0.27077 * 12 11 10 28 28 C 1.37710 * 120.02064 * 359.45003 * 27 12 11 29 29 H 1.09005 * 109.46645 * 60.00626 * 1 2 3 30 30 H 1.08994 * 109.47028 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47059 * 300.00680 * 1 2 3 32 32 H 1.09003 * 109.47091 * 60.00061 * 5 3 2 33 33 H 1.08997 * 109.47423 * 299.99544 * 5 3 2 34 34 H 0.97002 * 120.00246 * 0.02562 * 6 5 3 35 35 H 1.07996 * 120.01212 * 0.02562 * 10 9 7 36 36 H 1.08005 * 119.99292 * 180.02562 * 11 10 9 37 37 H 1.07999 * 120.26640 * 0.04478 * 14 13 12 38 38 H 1.08004 * 120.65961 * 179.97438 * 15 14 13 39 39 H 1.07991 * 120.41169 * 179.74560 * 16 15 14 40 40 H 0.97003 * 120.00197 * 180.02562 * 21 20 18 41 41 H 1.07996 * 119.98900 * 179.72701 * 27 12 11 42 42 H 1.08000 * 120.01217 * 180.27135 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 7 3.9816 2.6798 -0.0002 7 6 5.2920 2.9951 0.0007 8 8 6.1292 2.1138 0.0016 9 6 5.7111 4.4125 0.0005 10 6 7.0689 4.7397 0.0020 11 6 7.4584 6.0605 0.0024 12 6 6.4972 7.0716 0.0018 13 6 6.9176 8.4935 0.0028 14 6 5.9830 9.4909 -0.2952 15 6 6.3796 10.8199 -0.2940 16 6 7.6975 11.1191 -0.0010 17 6 8.5892 10.0718 0.2957 18 6 9.9382 10.3640 0.6021 19 1 10.3730 11.3009 0.2863 20 6 10.7105 9.4390 1.3151 21 7 12.0063 9.5928 1.3948 22 14 9.8892 7.9849 2.1523 23 1 9.7524 6.8682 1.1830 24 1 10.7180 7.5432 3.3026 25 1 8.5445 8.3875 2.6368 26 7 8.1717 8.8038 0.2850 27 6 5.1408 6.7457 0.0066 28 6 4.7494 5.4254 0.0005 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 3.9564 0.7806 -0.8892 33 1 3.9557 0.7811 0.8908 34 1 3.3135 3.3831 -0.0005 35 1 7.8131 3.9571 0.0028 36 1 8.5083 6.3138 0.0031 37 1 4.9608 9.2280 -0.5241 38 1 5.6742 11.6055 -0.5217 39 1 8.0373 12.1442 0.0038 40 1 12.5414 8.9517 1.8884 41 1 4.3975 7.5291 0.0107 42 1 3.6993 5.1733 -0.0002 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245108781.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:45:00 Heat of formation + Delta-G solvation = -68.681738 kcal Electronic energy + Delta-G solvation = -27443.348655 eV Core-core repulsion = 23353.050864 eV Total energy + Delta-G solvation = -4090.297792 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.17564 -40.14841 -39.07071 -37.78048 -37.15059 -34.91555 -33.83653 -32.36617 -31.47182 -30.76937 -30.01558 -29.00087 -27.23432 -25.90484 -24.12090 -22.68172 -21.82799 -21.50256 -20.91356 -20.23750 -18.77611 -17.88549 -17.74336 -17.24237 -16.83761 -16.42738 -15.90578 -15.48542 -15.32097 -14.87000 -14.76095 -14.65299 -14.13016 -13.98961 -13.82044 -13.49927 -13.37543 -13.21195 -13.01921 -12.92238 -12.64752 -12.58330 -12.15892 -11.66286 -11.62353 -11.38603 -11.15877 -11.05967 -10.89409 -10.67221 -10.42378 -10.16222 -10.08834 -9.60061 -9.43399 -9.08775 -8.83261 -8.57264 -8.00568 -7.62254 -6.98114 -4.76345 0.70850 1.55963 1.56639 1.88433 2.27925 2.50530 2.95040 2.97051 3.34332 3.40366 3.50322 4.01227 4.10018 4.22465 4.51004 4.57499 4.58802 4.66120 4.78927 4.83076 4.88300 5.01192 5.03580 5.09190 5.45383 5.53140 5.59162 5.69873 5.80022 5.87761 5.94461 6.06568 6.19522 6.30981 6.37874 6.41591 6.47230 6.79811 6.86409 7.03650 7.05806 7.07088 7.17989 7.21905 7.36833 7.70461 7.94021 8.06347 8.41958 8.52307 9.39255 9.96562 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.019889 B = 0.002349 C = 0.002144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.497923 B =11915.346411 C =13057.050070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.354 6.354 3 C 0.460 3.540 4 O -0.502 6.502 5 C 0.129 3.871 6 N -0.726 5.726 7 C 0.572 3.428 8 O -0.535 6.535 9 C -0.151 4.151 10 C -0.060 4.060 11 C -0.106 4.106 12 C 0.010 3.990 13 C 0.184 3.816 14 C -0.285 4.285 15 C -0.053 4.053 16 C -0.244 4.244 17 C 0.249 3.751 18 C -0.416 4.416 19 H 0.098 0.902 20 C 0.087 3.913 21 N -0.798 5.798 22 Si 0.976 3.024 23 H -0.260 1.260 24 H -0.321 1.321 25 H -0.269 1.269 26 N -0.550 5.550 27 C -0.115 4.115 28 C -0.089 4.089 29 H 0.066 0.934 30 H 0.105 0.895 31 H 0.066 0.934 32 H 0.115 0.885 33 H 0.115 0.885 34 H 0.412 0.588 35 H 0.135 0.865 36 H 0.149 0.851 37 H 0.107 0.893 38 H 0.107 0.893 39 H 0.110 0.890 40 H 0.289 0.711 41 H 0.134 0.866 42 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.007 -15.800 -1.987 24.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.269 6.269 3 C 0.302 3.698 4 O -0.390 6.390 5 C 0.004 3.996 6 N -0.385 5.385 7 C 0.361 3.639 8 O -0.413 6.413 9 C -0.154 4.154 10 C -0.079 4.079 11 C -0.125 4.125 12 C 0.009 3.991 13 C 0.044 3.956 14 C -0.309 4.309 15 C -0.077 4.077 16 C -0.267 4.267 17 C 0.124 3.876 18 C -0.447 4.447 19 H 0.116 0.884 20 C -0.135 4.135 21 N -0.421 5.421 22 Si 0.808 3.192 23 H -0.186 1.186 24 H -0.252 1.252 25 H -0.194 1.194 26 N -0.268 5.268 27 C -0.134 4.134 28 C -0.107 4.107 29 H 0.084 0.916 30 H 0.123 0.877 31 H 0.084 0.916 32 H 0.133 0.867 33 H 0.133 0.867 34 H 0.251 0.749 35 H 0.153 0.847 36 H 0.167 0.833 37 H 0.125 0.875 38 H 0.125 0.875 39 H 0.129 0.871 40 H 0.099 0.901 41 H 0.152 0.848 42 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -17.758 -16.753 -1.751 24.477 hybrid contribution -1.457 0.605 0.135 1.583 sum -19.215 -16.149 -1.617 25.152 Atomic orbital electron populations 1.23356 0.75389 1.04139 1.02912 1.86483 1.24097 1.32500 1.83843 1.23598 0.91930 0.81849 0.72418 1.90693 1.66818 1.36277 1.45186 1.20604 0.86723 0.85623 1.06678 1.45692 1.08422 1.07055 1.77290 1.18322 0.81130 0.89173 0.75243 1.90779 1.51311 1.49631 1.49552 1.19672 0.94827 0.91331 1.09608 1.21201 0.94392 0.96719 0.95539 1.21772 1.01685 0.91213 0.97797 1.19115 0.92755 0.92375 0.94904 1.19363 0.90151 0.90772 0.95296 1.21154 0.99175 0.93201 1.17365 1.20937 0.95554 0.95365 0.95818 1.21818 0.93821 0.99230 1.11786 1.18533 0.93588 0.86178 0.89274 1.19463 0.92192 1.04087 1.28951 0.88421 1.26301 0.94296 0.98966 0.93978 1.69629 1.06509 1.34880 1.31093 0.85092 0.77789 0.79966 0.76338 1.18606 1.25207 1.19403 1.67109 1.15021 1.21168 1.23504 1.21177 0.95389 0.96019 1.00805 1.21095 0.98316 0.92482 0.98855 0.91554 0.87658 0.91558 0.86727 0.86728 0.74866 0.84667 0.83313 0.87476 0.87522 0.87149 0.90061 0.84819 0.85795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.17 10.56 101.05 1.07 1.23 16 2 O -0.35 -2.53 10.57 -39.26 -0.41 -2.94 16 3 C 0.46 3.82 8.03 36.01 0.29 4.11 16 4 O -0.50 -5.32 15.42 -18.75 -0.29 -5.61 16 5 C 0.13 1.03 6.27 -5.19 -0.03 1.00 16 6 N -0.73 -7.44 5.48 -62.44 -0.34 -7.78 16 7 C 0.57 7.68 7.77 -12.35 -0.10 7.58 16 8 O -0.54 -8.56 16.33 5.31 0.09 -8.48 16 9 C -0.15 -2.17 5.88 -104.92 -0.62 -2.79 16 10 C -0.06 -0.97 9.58 -39.24 -0.38 -1.34 16 11 C -0.11 -1.98 9.50 -39.30 -0.37 -2.35 16 12 C 0.01 0.18 5.86 -104.83 -0.61 -0.43 16 13 C 0.18 3.99 6.68 -82.95 -0.55 3.44 16 14 C -0.29 -5.59 9.43 -38.79 -0.37 -5.96 16 15 C -0.05 -1.04 10.15 -39.40 -0.40 -1.44 16 16 C -0.24 -5.44 9.83 -38.63 -0.38 -5.82 16 17 C 0.25 6.25 6.03 -85.01 -0.51 5.74 16 18 C -0.42 -11.07 9.67 -37.72 -0.36 -11.44 16 19 H 0.10 2.64 8.06 -52.48 -0.42 2.22 16 20 C 0.09 2.30 5.51 -17.35 -0.10 2.20 16 21 N -0.80 -21.06 13.92 55.55 0.77 -20.28 16 22 Si 0.98 23.31 25.23 -169.99 -4.29 19.02 16 23 H -0.26 -5.96 4.97 56.52 0.28 -5.68 16 24 H -0.32 -7.48 7.11 56.52 0.40 -7.08 16 25 H -0.27 -6.75 6.91 56.52 0.39 -6.36 16 26 N -0.55 -13.47 4.91 -7.68 -0.04 -13.51 16 27 C -0.11 -1.72 9.36 -39.30 -0.37 -2.09 16 28 C -0.09 -1.15 9.53 -39.24 -0.37 -1.52 16 29 H 0.07 0.31 8.13 -51.93 -0.42 -0.11 16 30 H 0.11 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.07 0.31 8.13 -51.93 -0.42 -0.11 16 32 H 0.12 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.12 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.41 3.89 5.46 -40.82 -0.22 3.67 16 35 H 0.14 2.09 7.64 -52.49 -0.40 1.69 16 36 H 0.15 3.05 5.21 -52.48 -0.27 2.77 16 37 H 0.11 1.75 6.40 -52.49 -0.34 1.41 16 38 H 0.11 1.72 8.06 -52.48 -0.42 1.30 16 39 H 0.11 2.27 8.06 -52.49 -0.42 1.85 16 40 H 0.29 6.96 8.29 -40.82 -0.34 6.63 16 41 H 0.13 1.73 6.39 -52.49 -0.34 1.40 16 42 H 0.12 1.19 6.39 -52.49 -0.34 0.86 16 LS Contribution 361.11 15.07 5.44 5.44 Total: -1.00 -31.19 361.11 -7.79 -38.98 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -4.55 Total: 5.03 kcal Atomic # 6 Polarization: -5.70 SS G_CDS: -4.17 Total: -9.86 kcal Atomic # 7 Polarization: -41.97 SS G_CDS: 0.39 Total: -41.58 kcal Atomic # 8 Polarization: -16.41 SS G_CDS: -0.62 Total: -17.03 kcal Atomic # 14 Polarization: 23.31 SS G_CDS: -4.29 Total: 19.02 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.19 -7.79 -38.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245108781.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.698 kcal (2) G-P(sol) polarization free energy of solvation -31.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds