Wall clock time and date at job start Tue Mar 31 2020 23:45:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34231 * 116.99874 * 2 1 4 4 O 1.20827 * 119.99992 * 359.97438 * 3 2 1 5 5 C 1.50703 * 119.99924 * 179.97438 * 3 2 1 6 6 N 1.46502 * 109.46822 * 179.97438 * 5 3 2 7 7 C 1.34776 * 119.99764 * 179.97438 * 6 5 3 8 8 O 1.21559 * 120.00088 * 0.02562 * 7 6 5 9 9 C 1.47797 * 120.00276 * 180.02562 * 7 6 5 10 10 C 1.39668 * 120.02164 * 179.97438 * 9 7 6 11 11 C 1.37705 * 119.97870 * 180.02562 * 10 9 7 12 12 C 1.39506 * 120.02190 * 0.02562 * 11 10 9 13 13 C 1.48273 * 119.98190 * 179.97438 * 12 11 10 14 14 C 1.39896 * 119.61170 * 165.83945 * 13 12 11 15 15 C 1.38703 * 119.46430 * 180.02562 * 14 13 12 16 16 C 1.38275 * 118.69124 * 0.24793 * 15 14 13 17 17 C 1.40717 * 119.18223 * 359.51154 * 16 15 14 18 18 C 1.41386 * 119.76838 * 180.24651 * 17 16 15 19 19 H 1.08006 * 120.00064 * 338.70453 * 18 17 16 20 20 C 1.40019 * 120.00531 * 158.69651 * 18 17 16 21 21 N 1.30738 * 120.00430 * 167.85837 * 20 18 17 22 22 Si 1.86805 * 119.99699 * 347.86000 * 20 18 17 23 23 H 1.48508 * 109.47116 * 86.27730 * 22 20 18 24 24 H 1.48499 * 109.47204 * 206.27606 * 22 20 18 25 25 H 1.48501 * 109.47177 * 326.27618 * 22 20 18 26 26 N 1.32237 * 119.60830 * 345.85975 * 13 12 11 27 27 C 1.39501 * 120.03777 * 0.27077 * 12 11 10 28 28 C 1.37710 * 120.02064 * 359.45003 * 27 12 11 29 29 H 1.09005 * 109.46645 * 60.00626 * 1 2 3 30 30 H 1.08994 * 109.47028 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47059 * 300.00680 * 1 2 3 32 32 H 1.09003 * 109.47091 * 60.00061 * 5 3 2 33 33 H 1.08997 * 109.47423 * 299.99544 * 5 3 2 34 34 H 0.97002 * 120.00246 * 0.02562 * 6 5 3 35 35 H 1.07996 * 120.01212 * 0.02562 * 10 9 7 36 36 H 1.08005 * 119.99292 * 180.02562 * 11 10 9 37 37 H 1.07999 * 120.26640 * 0.04478 * 14 13 12 38 38 H 1.08004 * 120.65961 * 179.97438 * 15 14 13 39 39 H 1.07991 * 120.41169 * 179.74560 * 16 15 14 40 40 H 0.97003 * 120.00197 * 180.02562 * 21 20 18 41 41 H 1.07996 * 119.98900 * 179.72701 * 27 12 11 42 42 H 1.08000 * 120.01217 * 180.27135 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 7 3.9816 2.6798 -0.0002 7 6 5.2920 2.9951 0.0007 8 8 6.1292 2.1138 0.0016 9 6 5.7111 4.4125 0.0005 10 6 7.0689 4.7397 0.0020 11 6 7.4584 6.0605 0.0024 12 6 6.4972 7.0716 0.0018 13 6 6.9176 8.4935 0.0028 14 6 5.9830 9.4909 -0.2952 15 6 6.3796 10.8199 -0.2940 16 6 7.6975 11.1191 -0.0010 17 6 8.5892 10.0718 0.2957 18 6 9.9382 10.3640 0.6021 19 1 10.3730 11.3009 0.2863 20 6 10.7105 9.4390 1.3151 21 7 12.0063 9.5928 1.3948 22 14 9.8892 7.9849 2.1523 23 1 9.7524 6.8682 1.1830 24 1 10.7180 7.5432 3.3026 25 1 8.5445 8.3875 2.6368 26 7 8.1717 8.8038 0.2850 27 6 5.1408 6.7457 0.0066 28 6 4.7494 5.4254 0.0005 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 3.9564 0.7806 -0.8892 33 1 3.9557 0.7811 0.8908 34 1 3.3135 3.3831 -0.0005 35 1 7.8131 3.9571 0.0028 36 1 8.5083 6.3138 0.0031 37 1 4.9608 9.2280 -0.5241 38 1 5.6742 11.6055 -0.5217 39 1 8.0373 12.1442 0.0038 40 1 12.5414 8.9517 1.8884 41 1 4.3975 7.5291 0.0107 42 1 3.6993 5.1733 -0.0002 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245108781.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:45:00 Heat of formation + Delta-G solvation = -87.960696 kcal Electronic energy + Delta-G solvation = -27444.184654 eV Core-core repulsion = 23353.050864 eV Total energy + Delta-G solvation = -4091.133790 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.88246 -41.23061 -40.55250 -39.11356 -37.79314 -35.82392 -35.67858 -33.82018 -33.12790 -32.04972 -31.26885 -29.95201 -27.95662 -27.55315 -25.43332 -24.07570 -23.02298 -22.65936 -22.10076 -21.46504 -19.73328 -19.59252 -18.57243 -18.05674 -17.83367 -17.50656 -17.00034 -16.80940 -16.50811 -16.34257 -16.31884 -15.74665 -15.38186 -15.00465 -14.87758 -14.78032 -14.72639 -14.48451 -14.36465 -14.17005 -13.81193 -13.52072 -13.30333 -13.07265 -12.98125 -12.78355 -12.67530 -12.26930 -12.11279 -11.87957 -11.85627 -11.80108 -11.32136 -11.24089 -10.69001 -10.43253 -10.24282 -10.04876 -9.77503 -9.20873 -8.92245 -6.71178 -0.58140 0.35470 0.67381 0.84004 0.94537 1.25560 1.38757 1.46434 1.56122 1.77487 2.15900 2.30694 2.54227 2.85385 3.35088 3.51562 3.63600 3.66522 3.82806 3.91707 4.16110 4.18133 4.27349 4.31350 4.34491 4.34746 4.40815 4.53575 4.62930 4.72565 4.73079 4.76025 4.97047 4.99369 5.01568 5.17917 5.22115 5.22987 5.36493 5.42900 5.57391 5.67920 5.80336 5.97269 6.10355 6.25279 6.48731 6.56829 6.61751 6.95622 7.62186 8.08140 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.019889 B = 0.002349 C = 0.002144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.497923 B =11915.346411 C =13057.050070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.356 6.356 3 C 0.468 3.532 4 O -0.527 6.527 5 C 0.126 3.874 6 N -0.712 5.712 7 C 0.575 3.425 8 O -0.565 6.565 9 C -0.145 4.145 10 C -0.067 4.067 11 C -0.126 4.126 12 C -0.020 4.020 13 C 0.160 3.840 14 C -0.262 4.262 15 C -0.045 4.045 16 C -0.262 4.262 17 C 0.234 3.766 18 C -0.460 4.460 19 H 0.074 0.926 20 C 0.060 3.940 21 N -0.837 5.837 22 Si 1.019 2.981 23 H -0.255 1.255 24 H -0.315 1.315 25 H -0.287 1.287 26 N -0.573 5.573 27 C -0.103 4.103 28 C -0.069 4.069 29 H 0.066 0.934 30 H 0.132 0.868 31 H 0.065 0.935 32 H 0.128 0.872 33 H 0.127 0.873 34 H 0.419 0.581 35 H 0.134 0.866 36 H 0.118 0.882 37 H 0.154 0.846 38 H 0.154 0.846 39 H 0.118 0.882 40 H 0.295 0.705 41 H 0.164 0.836 42 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.175 -17.508 -2.553 29.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.271 6.271 3 C 0.311 3.689 4 O -0.416 6.416 5 C 0.001 3.999 6 N -0.369 5.369 7 C 0.364 3.636 8 O -0.444 6.444 9 C -0.149 4.149 10 C -0.086 4.086 11 C -0.144 4.144 12 C -0.021 4.021 13 C 0.022 3.978 14 C -0.284 4.284 15 C -0.068 4.068 16 C -0.284 4.284 17 C 0.108 3.892 18 C -0.492 4.492 19 H 0.093 0.907 20 C -0.158 4.158 21 N -0.463 5.463 22 Si 0.851 3.149 23 H -0.181 1.181 24 H -0.247 1.247 25 H -0.214 1.214 26 N -0.291 5.291 27 C -0.121 4.121 28 C -0.087 4.087 29 H 0.084 0.916 30 H 0.150 0.850 31 H 0.084 0.916 32 H 0.146 0.854 33 H 0.145 0.855 34 H 0.259 0.741 35 H 0.151 0.849 36 H 0.136 0.864 37 H 0.171 0.829 38 H 0.172 0.828 39 H 0.136 0.864 40 H 0.105 0.895 41 H 0.181 0.819 42 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -22.976 -18.487 -2.329 29.582 hybrid contribution -0.269 1.014 0.186 1.066 sum -23.246 -17.473 -2.143 29.159 Atomic orbital electron populations 1.23631 0.73917 1.06011 1.02890 1.86479 1.25514 1.31750 1.83368 1.23529 0.91818 0.81835 0.71691 1.90683 1.67319 1.37036 1.46566 1.20777 0.86841 0.84291 1.07946 1.45539 1.07284 1.08457 1.75590 1.18105 0.81884 0.88324 0.75279 1.90779 1.52353 1.50162 1.51125 1.19870 0.94267 0.92662 1.08069 1.21164 0.95748 0.95632 0.96063 1.21543 1.00471 0.92548 0.99864 1.19160 0.94572 0.90658 0.97729 1.20038 0.89657 0.93147 0.94980 1.21767 1.00756 0.92573 1.13327 1.21465 0.94917 0.96854 0.93606 1.22037 0.95024 0.99059 1.12248 1.18690 0.93603 0.87445 0.89494 1.19427 0.93805 1.03964 1.31989 0.90742 1.26733 0.94598 1.00230 0.94263 1.69645 1.07025 1.36301 1.33329 0.84459 0.75981 0.78623 0.75831 1.18115 1.24677 1.21428 1.67006 1.17146 1.20986 1.23967 1.21444 0.93882 0.97660 0.99136 1.21485 1.00010 0.91121 0.96115 0.91558 0.84951 0.91617 0.85437 0.85536 0.74106 0.84856 0.86435 0.82860 0.82836 0.86361 0.89501 0.81869 0.81477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 10.56 113.37 1.20 1.39 16 2 O -0.36 -4.07 10.57 -51.43 -0.54 -4.62 16 3 C 0.47 6.36 8.03 71.24 0.57 6.94 16 4 O -0.53 -9.51 15.42 21.96 0.34 -9.17 16 5 C 0.13 1.61 6.27 85.63 0.54 2.15 16 6 N -0.71 -11.98 5.48 -469.75 -2.57 -14.55 16 7 C 0.58 13.83 7.77 86.77 0.67 14.51 16 8 O -0.56 -17.05 16.33 -3.90 -0.06 -17.11 16 9 C -0.15 -3.78 5.88 -20.06 -0.12 -3.90 16 10 C -0.07 -2.14 9.58 22.49 0.22 -1.93 16 11 C -0.13 -4.70 9.50 22.45 0.21 -4.49 16 12 C -0.02 -0.72 5.86 -20.00 -0.12 -0.83 16 13 C 0.16 6.71 6.68 42.16 0.28 6.99 16 14 C -0.26 -9.17 9.43 22.78 0.21 -8.95 16 15 C -0.04 -1.59 10.15 22.39 0.23 -1.36 16 16 C -0.26 -11.53 9.83 22.88 0.23 -11.30 16 17 C 0.23 12.12 6.03 40.27 0.24 12.36 16 18 C -0.46 -26.10 9.67 23.48 0.23 -25.87 16 19 H 0.07 4.38 8.06 -2.91 -0.02 4.36 16 20 C 0.06 3.35 5.51 85.29 0.47 3.82 16 21 N -0.84 -47.05 13.92 21.83 0.30 -46.75 16 22 Si 1.02 50.57 25.23 68.60 1.73 52.30 16 23 H -0.26 -12.27 4.97 99.48 0.49 -11.78 16 24 H -0.32 -15.00 7.11 99.48 0.71 -14.29 16 25 H -0.29 -14.92 6.91 99.48 0.69 -14.23 16 26 N -0.57 -28.56 4.91 -178.22 -0.88 -29.44 16 27 C -0.10 -2.60 9.36 22.45 0.21 -2.39 16 28 C -0.07 -1.46 9.53 22.49 0.21 -1.24 16 29 H 0.07 0.46 8.13 -2.38 -0.02 0.44 16 30 H 0.13 0.13 8.14 -2.39 -0.02 0.11 16 31 H 0.07 0.46 8.13 -2.39 -0.02 0.44 16 32 H 0.13 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.13 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.42 6.00 5.46 -92.71 -0.51 5.49 16 35 H 0.13 4.19 7.64 -2.91 -0.02 4.17 16 36 H 0.12 5.08 5.21 -2.91 -0.02 5.07 16 37 H 0.15 3.94 6.40 -2.91 -0.02 3.92 16 38 H 0.15 4.06 8.06 -2.91 -0.02 4.04 16 39 H 0.12 4.89 8.06 -2.92 -0.02 4.87 16 40 H 0.29 15.09 8.29 -92.71 -0.77 14.32 16 41 H 0.16 3.14 6.39 -2.91 -0.02 3.12 16 42 H 0.17 2.12 6.39 -2.91 -0.02 2.10 16 Total: -1.00 -72.71 361.11 4.16 -68.55 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: 0.35 Total: 14.90 kcal Atomic # 6 Polarization: -19.60 SS G_CDS: 5.49 Total: -14.12 kcal Atomic # 7 Polarization: -87.59 SS G_CDS: -3.14 Total: -90.74 kcal Atomic # 8 Polarization: -30.63 SS G_CDS: -0.27 Total: -30.90 kcal Atomic # 14 Polarization: 50.57 SS G_CDS: 1.73 Total: 52.30 kcal Total: -72.71 4.16 -68.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245108781.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.408 kcal (2) G-P(sol) polarization free energy of solvation -72.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds