Wall clock time and date at job start Tue Mar 31 2020 23:45:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34228 * 117.00328 * 2 1 4 4 O 1.20824 * 119.99794 * 0.02562 * 3 2 1 5 5 C 1.50695 * 120.00126 * 179.97438 * 3 2 1 6 6 N 1.46511 * 109.47011 * 180.02562 * 5 3 2 7 7 C 1.34770 * 119.99862 * 180.02562 * 6 5 3 8 8 O 1.21567 * 120.00072 * 0.02562 * 7 6 5 9 9 C 1.47774 * 120.00092 * 180.02562 * 7 6 5 10 10 C 1.39671 * 120.02948 * 180.02562 * 9 7 6 11 11 C 1.37704 * 119.98336 * 180.02562 * 10 9 7 12 12 C 1.39479 * 120.01867 * 359.97438 * 11 10 9 13 13 C 1.48309 * 119.97419 * 180.02562 * 12 11 10 14 14 C 1.38920 * 119.61062 * 180.02562 * 13 12 11 15 15 C 1.40871 * 118.75731 * 179.97438 * 14 13 12 16 16 C 1.41519 * 120.98736 * 180.29497 * 15 14 13 17 17 H 1.08004 * 119.99737 * 155.87803 * 16 15 14 18 18 C 1.40054 * 120.00044 * 335.88505 * 16 15 14 19 19 N 1.30730 * 119.99788 * 343.26805 * 18 16 15 20 20 Si 1.86795 * 120.00029 * 163.27444 * 18 16 15 21 21 H 1.48500 * 109.47304 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47507 * 119.99619 * 20 18 16 23 23 H 1.48503 * 109.46946 * 239.99633 * 20 18 16 24 24 C 1.41129 * 118.02385 * 0.02562 * 15 14 13 25 25 C 1.37791 * 119.07383 * 359.97438 * 24 15 14 26 26 N 1.31887 * 121.15959 * 359.97438 * 25 24 15 27 27 C 1.39488 * 120.04877 * 0.27281 * 12 11 10 28 28 C 1.37696 * 120.02080 * 359.48952 * 27 12 11 29 29 H 1.08996 * 109.46862 * 59.99729 * 1 2 3 30 30 H 1.08999 * 109.46653 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46847 * 299.99788 * 1 2 3 32 32 H 1.08996 * 109.46884 * 60.00609 * 5 3 2 33 33 H 1.08997 * 109.47845 * 300.00112 * 5 3 2 34 34 H 0.96995 * 119.99714 * 0.02562 * 6 5 3 35 35 H 1.08004 * 120.01034 * 359.97438 * 10 9 7 36 36 H 1.07992 * 119.99070 * 179.97438 * 11 10 9 37 37 H 1.07995 * 120.62439 * 0.02562 * 14 13 12 38 38 H 0.97006 * 119.99787 * 180.02562 * 19 18 16 39 39 H 1.07998 * 120.45896 * 179.97438 * 24 15 14 40 40 H 1.07995 * 119.42188 * 180.02562 * 25 24 15 41 41 H 1.08000 * 119.98618 * 179.75052 * 27 12 11 42 42 H 1.08000 * 120.01471 * 180.25643 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4035 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 7 3.9818 2.6797 0.0011 7 6 5.2921 2.9950 0.0011 8 8 6.1293 2.1135 0.0003 9 6 5.7112 4.4120 0.0022 10 6 7.0690 4.7394 0.0017 11 6 7.4584 6.0602 0.0032 12 6 6.4974 7.0711 0.0048 13 6 6.9179 8.4933 0.0058 14 6 5.9544 9.4940 0.0079 15 6 6.3739 10.8388 0.0094 16 6 5.4327 11.8956 0.0178 17 1 5.7133 12.8655 0.4013 18 6 4.1375 11.6838 -0.4711 19 7 3.8845 10.6447 -1.2230 20 14 2.7716 12.8860 -0.0490 21 1 3.3135 13.9691 0.8103 22 1 2.2244 13.4723 -1.2988 23 1 1.6909 12.1721 0.6774 24 6 7.7607 11.1007 0.0083 25 6 8.6422 10.0417 0.0062 26 7 8.2113 8.7952 0.0058 27 6 5.1411 6.7453 0.0105 28 6 4.7496 5.4252 0.0040 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 3.9564 0.7806 -0.8892 33 1 3.9558 0.7808 0.8907 34 1 3.3138 3.3830 0.0014 35 1 7.8133 3.9568 0.0010 36 1 8.5082 6.3135 0.0033 37 1 4.9034 9.2457 0.0091 38 1 2.9875 10.4981 -1.5620 39 1 8.1258 12.1171 0.0090 40 1 9.7045 10.2357 0.0057 41 1 4.3978 7.5289 0.0157 42 1 3.6994 5.1732 0.0042 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245108788.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:45:04 Heat of formation + Delta-G solvation = -69.553509 kcal Electronic energy + Delta-G solvation = -27259.236345 eV Core-core repulsion = 23168.900750 eV Total energy + Delta-G solvation = -4090.335594 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.08533 -40.00303 -38.83322 -37.56682 -37.05786 -34.80806 -34.27508 -32.21083 -30.96969 -30.57837 -29.63662 -28.47296 -27.04432 -26.10084 -23.84724 -22.70375 -21.72357 -21.11549 -21.00590 -20.10587 -18.62783 -17.86283 -17.62569 -17.16018 -16.63293 -16.04500 -15.75585 -15.38438 -15.23845 -14.84150 -14.67504 -14.32761 -14.03075 -13.80656 -13.65715 -13.50489 -13.23360 -13.07371 -12.90337 -12.80501 -12.64816 -12.50820 -11.90995 -11.59628 -11.44505 -11.30743 -11.30352 -11.07091 -11.04172 -10.67209 -10.36434 -10.05210 -9.97292 -9.57690 -9.48503 -8.98306 -8.66265 -8.18847 -8.10145 -7.33092 -6.97464 -4.72308 0.90111 1.64808 1.75868 1.97229 2.47902 2.67971 2.95904 3.00539 3.04016 3.06268 3.22789 3.76038 4.16907 4.18701 4.59419 4.65979 4.71240 4.73561 4.86912 4.98740 5.02918 5.08269 5.22697 5.26702 5.54742 5.70561 5.78469 5.80975 5.94480 6.01561 6.14514 6.34046 6.48780 6.57044 6.66285 6.67347 6.82953 6.95126 7.08551 7.15030 7.16319 7.25955 7.30199 7.33455 7.71567 7.95671 8.05378 8.29559 8.57375 8.60823 9.42149 9.93313 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011402 B = 0.002517 C = 0.002076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2455.035875 B =11120.577965 C =13485.749193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.354 6.354 3 C 0.458 3.542 4 O -0.501 6.501 5 C 0.129 3.871 6 N -0.727 5.727 7 C 0.573 3.427 8 O -0.540 6.540 9 C -0.160 4.160 10 C -0.062 4.062 11 C -0.107 4.107 12 C 0.026 3.974 13 C 0.123 3.877 14 C -0.181 4.181 15 C 0.122 3.878 16 C -0.451 4.451 17 H 0.084 0.916 18 C 0.077 3.923 19 N -0.784 5.784 20 Si 0.912 3.088 21 H -0.259 1.259 22 H -0.272 1.272 23 H -0.269 1.269 24 C -0.270 4.270 25 C 0.105 3.895 26 N -0.562 5.562 27 C -0.117 4.117 28 C -0.085 4.085 29 H 0.066 0.934 30 H 0.105 0.895 31 H 0.066 0.934 32 H 0.114 0.886 33 H 0.114 0.886 34 H 0.413 0.587 35 H 0.132 0.868 36 H 0.140 0.860 37 H 0.134 0.866 38 H 0.285 0.715 39 H 0.103 0.897 40 H 0.124 0.876 41 H 0.138 0.862 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.116 -16.086 1.681 17.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.270 6.270 3 C 0.301 3.699 4 O -0.388 6.388 5 C 0.004 3.996 6 N -0.385 5.385 7 C 0.363 3.637 8 O -0.418 6.418 9 C -0.163 4.163 10 C -0.080 4.080 11 C -0.125 4.125 12 C 0.025 3.975 13 C -0.007 4.007 14 C -0.203 4.203 15 C 0.114 3.886 16 C -0.482 4.482 17 H 0.102 0.898 18 C -0.143 4.143 19 N -0.409 5.409 20 Si 0.736 3.264 21 H -0.182 1.182 22 H -0.197 1.197 23 H -0.194 1.194 24 C -0.293 4.293 25 C -0.051 4.051 26 N -0.277 5.277 27 C -0.136 4.136 28 C -0.104 4.104 29 H 0.085 0.915 30 H 0.123 0.877 31 H 0.084 0.916 32 H 0.132 0.868 33 H 0.132 0.868 34 H 0.252 0.748 35 H 0.150 0.850 36 H 0.158 0.842 37 H 0.151 0.849 38 H 0.096 0.904 39 H 0.121 0.879 40 H 0.142 0.858 41 H 0.156 0.844 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -6.348 -17.253 1.542 18.449 hybrid contribution -1.961 1.728 0.005 2.613 sum -8.309 -15.526 1.547 17.677 Atomic orbital electron populations 1.23351 0.75441 1.04069 1.02942 1.86477 1.24058 1.32555 1.83913 1.23613 0.91963 0.81846 0.72504 1.90705 1.66794 1.36253 1.45015 1.20588 0.86676 0.85738 1.06558 1.45716 1.08534 1.06998 1.77263 1.18348 0.81043 0.89249 0.75029 1.90758 1.51356 1.49726 1.50001 1.19602 0.94880 0.91115 1.10694 1.21127 0.94253 0.96621 0.96046 1.21316 1.00812 0.90975 0.99399 1.19082 0.92572 0.92412 0.93434 1.19258 0.89929 0.90953 1.00515 1.22322 0.99738 0.92468 1.05806 1.17804 0.91558 0.92705 0.86501 1.19664 0.94726 0.98067 1.35778 0.89785 1.25999 1.00025 0.96037 0.92247 1.69752 1.22912 1.26194 1.22089 0.86184 0.80016 0.80770 0.79423 1.18212 1.19742 1.19421 1.21955 0.94277 0.98370 1.14658 1.21839 0.98108 0.88199 0.96939 1.67234 1.16100 1.21987 1.22351 1.21319 0.95954 0.96100 1.00226 1.21103 0.98246 0.92541 0.98529 0.91549 0.87709 0.91568 0.86807 0.86816 0.74791 0.85027 0.84223 0.84886 0.90409 0.87882 0.85819 0.84431 0.86031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.20 10.56 101.05 1.07 1.26 16 2 O -0.35 -2.82 10.57 -39.25 -0.41 -3.23 16 3 C 0.46 4.26 8.03 36.00 0.29 4.55 16 4 O -0.50 -5.93 15.42 -18.75 -0.29 -6.22 16 5 C 0.13 1.15 6.27 -5.19 -0.03 1.11 16 6 N -0.73 -8.26 5.48 -62.45 -0.34 -8.60 16 7 C 0.57 8.16 7.77 -12.36 -0.10 8.07 16 8 O -0.54 -8.87 16.33 5.31 0.09 -8.78 16 9 C -0.16 -2.44 5.88 -104.92 -0.62 -3.06 16 10 C -0.06 -0.99 9.58 -39.24 -0.38 -1.37 16 11 C -0.11 -1.91 9.55 -39.31 -0.38 -2.29 16 12 C 0.03 0.52 5.88 -104.83 -0.62 -0.09 16 13 C 0.12 2.86 6.72 -83.05 -0.56 2.30 16 14 C -0.18 -4.44 8.14 -38.33 -0.31 -4.75 16 15 C 0.12 3.09 5.60 -106.55 -0.60 2.50 16 16 C -0.45 -11.19 9.12 -37.65 -0.34 -11.53 16 17 H 0.08 2.00 7.90 -52.48 -0.41 1.58 16 18 C 0.08 1.79 5.20 -17.34 -0.09 1.70 16 19 N -0.78 -18.67 10.93 55.55 0.61 -18.06 16 20 Si 0.91 17.35 29.59 -169.99 -5.03 12.32 16 21 H -0.26 -4.90 7.11 56.52 0.40 -4.50 16 22 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 23 H -0.27 -5.04 7.11 56.52 0.40 -4.63 16 24 C -0.27 -6.29 9.90 -38.65 -0.38 -6.68 16 25 C 0.11 2.33 11.15 -17.69 -0.20 2.13 16 26 N -0.56 -13.00 9.38 -9.95 -0.09 -13.09 16 27 C -0.12 -2.09 9.39 -39.31 -0.37 -2.46 16 28 C -0.09 -1.28 9.53 -39.24 -0.37 -1.65 16 29 H 0.07 0.37 8.13 -51.93 -0.42 -0.05 16 30 H 0.10 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.07 0.37 8.13 -51.93 -0.42 -0.05 16 32 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.41 4.52 5.46 -40.82 -0.22 4.30 16 35 H 0.13 1.95 7.64 -52.48 -0.40 1.55 16 36 H 0.14 2.50 7.51 -52.49 -0.39 2.10 16 37 H 0.13 3.23 4.32 -52.49 -0.23 3.01 16 38 H 0.28 6.11 8.29 -40.82 -0.34 5.77 16 39 H 0.10 2.20 8.06 -52.49 -0.42 1.78 16 40 H 0.12 2.31 8.06 -52.49 -0.42 1.89 16 41 H 0.14 2.49 6.15 -52.49 -0.32 2.17 16 42 H 0.12 1.47 6.39 -52.49 -0.34 1.14 16 LS Contribution 367.74 15.07 5.54 5.54 Total: -1.00 -29.92 367.74 -8.32 -38.24 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: -4.41 Total: 12.14 kcal Atomic # 6 Polarization: -6.27 SS G_CDS: -3.98 Total: -10.25 kcal Atomic # 7 Polarization: -39.93 SS G_CDS: 0.17 Total: -39.76 kcal Atomic # 8 Polarization: -17.62 SS G_CDS: -0.62 Total: -18.24 kcal Atomic # 14 Polarization: 17.35 SS G_CDS: -5.03 Total: 12.32 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -29.92 -8.32 -38.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245108788.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.312 kcal (2) G-P(sol) polarization free energy of solvation -29.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds