Wall clock time and date at job start Tue Mar 31 2020 23:45:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34228 * 117.00328 * 2 1 4 4 O 1.20824 * 119.99794 * 0.02562 * 3 2 1 5 5 C 1.50695 * 120.00126 * 179.97438 * 3 2 1 6 6 N 1.46511 * 109.47011 * 180.02562 * 5 3 2 7 7 C 1.34770 * 119.99862 * 180.02562 * 6 5 3 8 8 O 1.21567 * 120.00072 * 0.02562 * 7 6 5 9 9 C 1.47774 * 120.00092 * 180.02562 * 7 6 5 10 10 C 1.39671 * 120.02948 * 180.02562 * 9 7 6 11 11 C 1.37704 * 119.98336 * 180.02562 * 10 9 7 12 12 C 1.39479 * 120.01867 * 359.97438 * 11 10 9 13 13 C 1.48309 * 119.97419 * 180.02562 * 12 11 10 14 14 C 1.38920 * 119.61062 * 180.02562 * 13 12 11 15 15 C 1.40871 * 118.75731 * 179.97438 * 14 13 12 16 16 C 1.41519 * 120.98736 * 180.29497 * 15 14 13 17 17 H 1.08004 * 119.99737 * 155.87803 * 16 15 14 18 18 C 1.40054 * 120.00044 * 335.88505 * 16 15 14 19 19 N 1.30730 * 119.99788 * 343.26805 * 18 16 15 20 20 Si 1.86795 * 120.00029 * 163.27444 * 18 16 15 21 21 H 1.48500 * 109.47304 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47507 * 119.99619 * 20 18 16 23 23 H 1.48503 * 109.46946 * 239.99633 * 20 18 16 24 24 C 1.41129 * 118.02385 * 0.02562 * 15 14 13 25 25 C 1.37791 * 119.07383 * 359.97438 * 24 15 14 26 26 N 1.31887 * 121.15959 * 359.97438 * 25 24 15 27 27 C 1.39488 * 120.04877 * 0.27281 * 12 11 10 28 28 C 1.37696 * 120.02080 * 359.48952 * 27 12 11 29 29 H 1.08996 * 109.46862 * 59.99729 * 1 2 3 30 30 H 1.08999 * 109.46653 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46847 * 299.99788 * 1 2 3 32 32 H 1.08996 * 109.46884 * 60.00609 * 5 3 2 33 33 H 1.08997 * 109.47845 * 300.00112 * 5 3 2 34 34 H 0.96995 * 119.99714 * 0.02562 * 6 5 3 35 35 H 1.08004 * 120.01034 * 359.97438 * 10 9 7 36 36 H 1.07992 * 119.99070 * 179.97438 * 11 10 9 37 37 H 1.07995 * 120.62439 * 0.02562 * 14 13 12 38 38 H 0.97006 * 119.99787 * 180.02562 * 19 18 16 39 39 H 1.07998 * 120.45896 * 179.97438 * 24 15 14 40 40 H 1.07995 * 119.42188 * 180.02562 * 25 24 15 41 41 H 1.08000 * 119.98618 * 179.75052 * 27 12 11 42 42 H 1.08000 * 120.01471 * 180.25643 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4035 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 7 3.9818 2.6797 0.0011 7 6 5.2921 2.9950 0.0011 8 8 6.1293 2.1135 0.0003 9 6 5.7112 4.4120 0.0022 10 6 7.0690 4.7394 0.0017 11 6 7.4584 6.0602 0.0032 12 6 6.4974 7.0711 0.0048 13 6 6.9179 8.4933 0.0058 14 6 5.9544 9.4940 0.0079 15 6 6.3739 10.8388 0.0094 16 6 5.4327 11.8956 0.0178 17 1 5.7133 12.8655 0.4013 18 6 4.1375 11.6838 -0.4711 19 7 3.8845 10.6447 -1.2230 20 14 2.7716 12.8860 -0.0490 21 1 3.3135 13.9691 0.8103 22 1 2.2244 13.4723 -1.2988 23 1 1.6909 12.1721 0.6774 24 6 7.7607 11.1007 0.0083 25 6 8.6422 10.0417 0.0062 26 7 8.2113 8.7952 0.0058 27 6 5.1411 6.7453 0.0105 28 6 4.7496 5.4252 0.0040 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 3.9564 0.7806 -0.8892 33 1 3.9558 0.7808 0.8907 34 1 3.3138 3.3830 0.0014 35 1 7.8133 3.9568 0.0010 36 1 8.5082 6.3135 0.0033 37 1 4.9034 9.2457 0.0091 38 1 2.9875 10.4981 -1.5620 39 1 8.1258 12.1171 0.0090 40 1 9.7045 10.2357 0.0057 41 1 4.3978 7.5289 0.0157 42 1 3.6994 5.1732 0.0042 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245108788.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:45:03 Heat of formation + Delta-G solvation = -86.437776 kcal Electronic energy + Delta-G solvation = -27259.968502 eV Core-core repulsion = 23168.900750 eV Total energy + Delta-G solvation = -4091.067751 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.87450 -41.16092 -40.37437 -38.99084 -37.79737 -36.05457 -35.78930 -33.69246 -32.60330 -32.01784 -30.74082 -29.67752 -27.91721 -27.76476 -25.20627 -24.24627 -22.80574 -22.66434 -22.10301 -21.43426 -19.70527 -19.38901 -18.51384 -17.84164 -17.74852 -17.31207 -17.14603 -16.72723 -16.31636 -16.28473 -16.22762 -15.60840 -15.19048 -15.11857 -14.83791 -14.66806 -14.57540 -14.45072 -14.28214 -14.06793 -13.75760 -13.38395 -13.14460 -13.06366 -13.00098 -12.85508 -12.70884 -12.08030 -11.95525 -11.89273 -11.82302 -11.73027 -11.29683 -11.23726 -10.59820 -10.35565 -10.01283 -9.98564 -9.91119 -8.99305 -8.71730 -6.58813 -0.49428 0.42037 0.88434 0.94172 0.95864 1.26898 1.39097 1.50718 1.54168 1.83769 2.16980 2.17430 2.66412 2.95580 3.43149 3.55652 3.69408 3.73674 3.88017 3.96834 4.18983 4.23109 4.26856 4.31235 4.33362 4.41921 4.46839 4.70924 4.71887 4.83634 4.91606 4.94184 5.02685 5.05677 5.19179 5.21617 5.24469 5.26190 5.44144 5.47248 5.69458 5.86363 5.90478 6.16622 6.25127 6.47250 6.48477 6.75161 6.77368 6.96847 7.63197 8.21321 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011402 B = 0.002517 C = 0.002076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2455.035875 B =11120.577965 C =13485.749193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.354 6.354 3 C 0.466 3.534 4 O -0.530 6.530 5 C 0.127 3.873 6 N -0.717 5.717 7 C 0.578 3.422 8 O -0.561 6.561 9 C -0.151 4.151 10 C -0.059 4.059 11 C -0.106 4.106 12 C -0.007 4.007 13 C 0.121 3.879 14 C -0.208 4.208 15 C 0.092 3.908 16 C -0.483 4.483 17 H 0.084 0.916 18 C 0.040 3.960 19 N -0.810 5.810 20 Si 0.985 3.015 21 H -0.258 1.258 22 H -0.265 1.265 23 H -0.261 1.261 24 C -0.288 4.288 25 C 0.102 3.898 26 N -0.572 5.572 27 C -0.122 4.122 28 C -0.072 4.072 29 H 0.064 0.936 30 H 0.134 0.866 31 H 0.064 0.936 32 H 0.130 0.870 33 H 0.130 0.870 34 H 0.416 0.584 35 H 0.147 0.853 36 H 0.136 0.864 37 H 0.128 0.872 38 H 0.294 0.706 39 H 0.115 0.885 40 H 0.159 0.841 41 H 0.128 0.872 42 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.456 -17.883 1.809 19.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.269 6.269 3 C 0.309 3.691 4 O -0.419 6.419 5 C 0.003 3.997 6 N -0.373 5.373 7 C 0.367 3.633 8 O -0.441 6.441 9 C -0.154 4.154 10 C -0.078 4.078 11 C -0.124 4.124 12 C -0.008 4.008 13 C -0.009 4.009 14 C -0.231 4.231 15 C 0.084 3.916 16 C -0.513 4.513 17 H 0.102 0.898 18 C -0.178 4.178 19 N -0.435 5.435 20 Si 0.805 3.195 21 H -0.181 1.181 22 H -0.190 1.190 23 H -0.186 1.186 24 C -0.311 4.311 25 C -0.053 4.053 26 N -0.287 5.287 27 C -0.140 4.140 28 C -0.090 4.090 29 H 0.082 0.918 30 H 0.153 0.847 31 H 0.083 0.917 32 H 0.147 0.853 33 H 0.148 0.852 34 H 0.256 0.744 35 H 0.164 0.836 36 H 0.154 0.846 37 H 0.146 0.854 38 H 0.105 0.895 39 H 0.134 0.866 40 H 0.176 0.824 41 H 0.146 0.854 42 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -7.698 -19.076 1.666 20.638 hybrid contribution -1.569 2.089 -0.057 2.613 sum -9.267 -16.987 1.610 19.417 Atomic orbital electron populations 1.23628 0.74007 1.06038 1.02790 1.86473 1.25430 1.31644 1.83384 1.23615 0.91984 0.81807 0.71646 1.90700 1.67414 1.37209 1.46608 1.20795 0.86611 0.84212 1.08090 1.45620 1.07525 1.08483 1.75700 1.18046 0.81765 0.88271 0.75179 1.90759 1.52119 1.49934 1.51240 1.19837 0.94659 0.92159 1.08794 1.21255 0.95170 0.95996 0.95383 1.21269 1.00274 0.91404 0.99496 1.19100 0.93959 0.91212 0.96569 1.19724 0.89781 0.92538 0.98895 1.22332 0.99872 0.92765 1.08090 1.18243 0.92789 0.93455 0.87069 1.19919 0.96103 0.98139 1.37172 0.89814 1.26826 1.01695 0.97801 0.91491 1.69791 1.23965 1.27481 1.22261 0.85102 0.76757 0.78331 0.79265 1.18143 1.18960 1.18572 1.22179 0.93974 0.99476 1.15425 1.22393 0.99697 0.87690 0.95531 1.67364 1.16099 1.22393 1.22800 1.21301 0.94948 0.97191 1.00589 1.21317 0.99864 0.91077 0.96763 0.91751 0.84747 0.91722 0.85278 0.85214 0.74437 0.83560 0.84602 0.85435 0.89487 0.86645 0.82357 0.85408 0.82878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.56 113.37 1.20 1.45 16 2 O -0.35 -4.80 10.57 -51.40 -0.54 -5.34 16 3 C 0.47 7.64 8.03 71.23 0.57 8.21 16 4 O -0.53 -11.64 15.42 21.97 0.34 -11.30 16 5 C 0.13 1.90 6.27 85.63 0.54 2.44 16 6 N -0.72 -14.39 5.48 -469.77 -2.57 -16.97 16 7 C 0.58 15.05 7.77 86.77 0.67 15.73 16 8 O -0.56 -17.04 16.33 -3.93 -0.06 -17.10 16 9 C -0.15 -4.35 5.88 -20.06 -0.12 -4.47 16 10 C -0.06 -1.83 9.58 22.49 0.22 -1.62 16 11 C -0.11 -3.79 9.55 22.44 0.21 -3.58 16 12 C -0.01 -0.30 5.88 -20.00 -0.12 -0.41 16 13 C 0.12 5.79 6.72 41.84 0.28 6.07 16 14 C -0.21 -10.67 8.14 23.08 0.19 -10.48 16 15 C 0.09 4.86 5.60 -21.12 -0.12 4.74 16 16 C -0.48 -24.72 9.12 23.52 0.21 -24.51 16 17 H 0.08 4.12 7.90 -2.91 -0.02 4.09 16 18 C 0.04 1.87 5.20 85.30 0.44 2.31 16 19 N -0.81 -39.36 10.93 21.84 0.24 -39.13 16 20 Si 0.99 35.59 29.59 68.60 2.03 37.62 16 21 H -0.26 -9.19 7.11 99.48 0.71 -8.49 16 22 H -0.26 -9.20 7.11 99.48 0.71 -8.49 16 23 H -0.26 -9.03 7.11 99.48 0.71 -8.32 16 24 C -0.29 -13.80 9.90 22.87 0.23 -13.57 16 25 C 0.10 4.57 11.15 84.58 0.94 5.51 16 26 N -0.57 -26.93 9.38 -185.38 -1.74 -28.67 16 27 C -0.12 -4.35 9.39 22.44 0.21 -4.14 16 28 C -0.07 -2.04 9.53 22.49 0.21 -1.83 16 29 H 0.06 0.62 8.13 -2.39 -0.02 0.60 16 30 H 0.13 0.37 8.14 -2.39 -0.02 0.35 16 31 H 0.06 0.61 8.13 -2.39 -0.02 0.59 16 32 H 0.13 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.13 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.42 8.02 5.46 -92.71 -0.51 7.52 16 35 H 0.15 4.09 7.64 -2.91 -0.02 4.07 16 36 H 0.14 4.90 7.51 -2.91 -0.02 4.87 16 37 H 0.13 6.52 4.32 -2.91 -0.01 6.51 16 38 H 0.29 12.74 8.29 -92.70 -0.77 11.97 16 39 H 0.12 5.05 8.06 -2.91 -0.02 5.03 16 40 H 0.16 5.77 8.06 -2.91 -0.02 5.74 16 41 H 0.13 4.80 6.15 -2.91 -0.02 4.78 16 42 H 0.15 3.33 6.39 -2.91 -0.02 3.31 16 Total: -1.00 -65.74 367.74 4.05 -61.69 By element: Atomic # 1 Polarization: 36.76 SS G_CDS: 0.59 Total: 37.34 kcal Atomic # 6 Polarization: -23.93 SS G_CDS: 5.78 Total: -18.15 kcal Atomic # 7 Polarization: -80.68 SS G_CDS: -4.07 Total: -84.76 kcal Atomic # 8 Polarization: -33.48 SS G_CDS: -0.27 Total: -33.74 kcal Atomic # 14 Polarization: 35.59 SS G_CDS: 2.03 Total: 37.62 kcal Total: -65.74 4.05 -61.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245108788.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.749 kcal (2) G-P(sol) polarization free energy of solvation -65.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds