Wall clock time and date at job start Tue Mar 31 2020 23:45:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34223 * 117.00071 * 2 1 4 4 O 1.20829 * 119.99835 * 359.97438 * 3 2 1 5 5 C 1.50696 * 119.99789 * 180.02562 * 3 2 1 6 6 N 1.46502 * 109.47205 * 179.97438 * 5 3 2 7 7 C 1.34770 * 120.00337 * 179.97438 * 6 5 3 8 8 O 1.21565 * 120.00169 * 0.02562 * 7 6 5 9 9 C 1.47766 * 120.00054 * 180.02562 * 7 6 5 10 10 C 1.39743 * 119.99244 * 180.02562 * 9 7 6 11 11 C 1.37602 * 120.00746 * 179.97438 * 10 9 7 12 12 C 1.39798 * 119.99223 * 359.97438 * 11 10 9 13 13 C 1.47752 * 120.00607 * 179.97438 * 12 11 10 14 14 N 1.32608 * 119.99731 * 316.13115 * 13 12 11 15 15 C 1.31696 * 121.72413 * 179.97438 * 14 13 12 16 16 C 1.38924 * 121.51552 * 0.02562 * 15 14 13 17 17 C 1.36855 * 119.79896 * 359.97438 * 16 15 14 18 18 C 1.41167 * 118.39570 * 0.24144 * 17 16 15 19 19 C 1.40828 * 120.72608 * 179.75281 * 18 17 16 20 20 H 1.08001 * 120.00609 * 151.60398 * 19 18 17 21 21 C 1.40153 * 119.99982 * 331.60560 * 19 18 17 22 22 N 1.30726 * 120.00059 * 348.32548 * 21 19 18 23 23 Si 1.86798 * 120.00362 * 168.32175 * 21 19 18 24 24 H 1.48500 * 109.46897 * 59.99773 * 23 21 19 25 25 H 1.48493 * 109.47428 * 179.97438 * 23 21 19 26 26 H 1.48504 * 109.47176 * 300.00385 * 23 21 19 27 27 C 1.39796 * 119.98646 * 0.27852 * 12 11 10 28 28 C 1.37608 * 119.99373 * 359.42098 * 27 12 11 29 29 H 1.08996 * 109.47560 * 59.99855 * 1 2 3 30 30 H 1.09003 * 109.47318 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46522 * 300.00063 * 1 2 3 32 32 H 1.08995 * 109.47560 * 59.99900 * 5 3 2 33 33 H 1.09004 * 109.47189 * 299.99554 * 5 3 2 34 34 H 0.97009 * 119.99606 * 0.02562 * 6 5 3 35 35 H 1.07997 * 119.99968 * 359.97188 * 10 9 7 36 36 H 1.08002 * 120.00689 * 180.02562 * 11 10 9 37 37 H 1.07998 * 119.23568 * 180.02562 * 15 14 13 38 38 H 1.08001 * 120.09677 * 179.97438 * 16 15 14 39 39 H 1.08004 * 120.80108 * 179.97438 * 17 16 15 40 40 H 0.96995 * 120.00183 * 180.02562 * 22 21 19 41 41 H 1.08001 * 120.00193 * 179.72512 * 27 12 11 42 42 H 1.07998 * 119.99499 * 180.28011 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2747 -0.0006 6 7 3.9818 2.6796 -0.0011 7 6 5.2921 2.9949 -0.0011 8 8 6.1294 2.1135 -0.0012 9 6 5.7111 4.4119 -0.0011 10 6 7.0698 4.7386 -0.0016 11 6 7.4603 6.0580 -0.0021 12 6 6.4976 7.0717 -0.0025 13 6 6.9166 8.4886 -0.0025 14 7 7.8983 8.8897 0.7938 15 6 8.2993 10.1438 0.8210 16 6 7.7123 11.1115 0.0155 17 6 6.6934 10.7659 -0.8303 18 6 6.2653 9.4209 -0.8511 19 6 5.2175 9.0123 -1.6988 20 1 5.1837 7.9968 -2.0649 21 6 4.2185 9.9236 -2.0673 22 7 4.1251 11.0744 -1.4542 23 14 3.0204 9.4938 -3.4345 24 1 2.2690 8.2669 -3.0666 25 1 2.0686 10.6167 -3.6298 26 1 3.7709 9.2556 -4.6936 27 6 5.1385 6.7446 0.0034 28 6 4.7486 5.4249 -0.0024 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3632 0.5139 0.8900 32 1 3.9557 0.7808 -0.8907 33 1 3.9564 0.7805 0.8892 34 1 3.3137 3.3829 -0.0006 35 1 7.8135 3.9555 -0.0017 36 1 8.5104 6.3105 -0.0030 37 1 9.1030 10.4263 1.4848 38 1 8.0591 12.1335 0.0566 39 1 6.2252 11.5052 -1.4633 40 1 3.4334 11.7049 -1.7090 41 1 4.3946 7.5275 0.0076 42 1 3.6986 5.1722 -0.0024 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245109830.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:45:07 Heat of formation + Delta-G solvation = -69.289299 kcal Electronic energy + Delta-G solvation = -27771.157268 eV Core-core repulsion = 23680.833131 eV Total energy + Delta-G solvation = -4090.324137 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.00593 -39.84403 -38.80671 -37.42087 -36.97466 -34.68544 -34.30276 -32.10820 -30.87773 -30.46402 -29.64538 -28.68091 -27.06752 -25.81886 -23.70756 -22.25329 -21.56002 -21.31149 -20.97354 -20.01510 -18.47861 -17.71253 -17.51685 -17.09093 -16.59011 -16.10233 -15.90564 -15.48873 -15.26872 -14.65777 -14.52966 -14.23045 -13.95121 -13.87384 -13.71213 -13.44130 -13.03945 -12.87512 -12.78092 -12.47569 -12.44566 -12.30051 -11.76317 -11.61254 -11.55473 -11.25052 -11.24938 -11.14936 -10.99416 -10.71006 -10.49929 -10.02804 -9.84360 -9.53779 -9.36466 -8.72383 -8.45393 -8.20437 -8.16301 -7.49108 -7.01240 -4.66172 1.17702 1.71853 2.00018 2.05051 2.45332 2.76165 2.92440 2.95335 3.07454 3.18639 3.23475 3.71756 4.26239 4.37139 4.46535 4.70763 4.78507 4.86387 4.95197 5.11459 5.13061 5.25220 5.43559 5.45346 5.54206 5.85208 5.95485 6.05271 6.11992 6.14493 6.19008 6.43687 6.53449 6.63584 6.70653 6.79392 6.84598 6.90613 7.11151 7.22480 7.30317 7.40665 7.45583 7.59025 7.71120 7.77657 8.20155 8.23854 8.45958 8.52961 9.43977 9.86707 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011562 B = 0.002960 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2421.189523 B = 9456.089577 C =11416.829660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.355 6.355 3 C 0.458 3.542 4 O -0.500 6.500 5 C 0.130 3.870 6 N -0.728 5.728 7 C 0.574 3.426 8 O -0.545 6.545 9 C -0.170 4.170 10 C -0.059 4.059 11 C -0.124 4.124 12 C 0.063 3.937 13 C -0.003 4.003 14 N -0.448 5.448 15 C -0.029 4.029 16 C -0.147 4.147 17 C -0.126 4.126 18 C 0.088 3.912 19 C -0.438 4.438 20 H 0.090 0.910 21 C 0.074 3.926 22 N -0.785 5.785 23 Si 0.911 3.089 24 H -0.260 1.260 25 H -0.276 1.276 26 H -0.261 1.261 27 C -0.106 4.106 28 C -0.090 4.090 29 H 0.065 0.935 30 H 0.104 0.896 31 H 0.065 0.935 32 H 0.113 0.887 33 H 0.113 0.887 34 H 0.413 0.587 35 H 0.127 0.873 36 H 0.126 0.874 37 H 0.123 0.877 38 H 0.100 0.900 39 H 0.128 0.872 40 H 0.287 0.713 41 H 0.141 0.859 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.753 -13.844 0.378 15.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.270 6.270 3 C 0.300 3.700 4 O -0.387 6.387 5 C 0.005 3.995 6 N -0.386 5.386 7 C 0.365 3.635 8 O -0.423 6.423 9 C -0.174 4.174 10 C -0.078 4.078 11 C -0.143 4.143 12 C 0.062 3.938 13 C -0.140 4.140 14 N -0.156 5.156 15 C -0.191 4.191 16 C -0.168 4.168 17 C -0.152 4.152 18 C 0.084 3.916 19 C -0.467 4.467 20 H 0.108 0.892 21 C -0.146 4.146 22 N -0.409 5.409 23 Si 0.735 3.265 24 H -0.184 1.184 25 H -0.201 1.201 26 H -0.185 1.185 27 C -0.125 4.125 28 C -0.109 4.109 29 H 0.084 0.916 30 H 0.122 0.878 31 H 0.084 0.916 32 H 0.131 0.869 33 H 0.131 0.869 34 H 0.252 0.748 35 H 0.145 0.855 36 H 0.144 0.856 37 H 0.140 0.860 38 H 0.118 0.882 39 H 0.146 0.854 40 H 0.098 0.902 41 H 0.159 0.841 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -6.178 -14.575 0.921 15.857 hybrid contribution -1.652 1.141 -1.119 2.299 sum -7.831 -13.434 -0.198 15.551 Atomic orbital electron populations 1.23342 0.75533 1.04007 1.02921 1.86477 1.23992 1.32619 1.83961 1.23643 0.92007 0.81812 0.72497 1.90707 1.66791 1.36249 1.44974 1.20574 0.86552 0.85941 1.06451 1.45733 1.08630 1.06842 1.77439 1.18397 0.80916 0.89373 0.74811 1.90740 1.51382 1.49853 1.50340 1.19511 0.94807 0.90875 1.12161 1.20990 0.94170 0.96385 0.96227 1.21246 0.99847 0.91396 1.01763 1.18714 0.92308 0.91603 0.91205 1.19480 1.00965 0.92580 1.00956 1.67014 1.11224 1.18182 1.19147 1.21700 1.03875 0.89011 1.04526 1.21478 0.98035 0.98756 0.98493 1.21464 0.96173 0.97362 1.00207 1.18332 0.91352 0.91585 0.90366 1.19637 1.05159 0.98446 1.23458 0.89206 1.26031 0.98515 0.94020 0.96028 1.69702 1.29722 1.07063 1.34369 0.86275 0.79552 0.79456 0.81234 1.18395 1.20064 1.18497 1.21417 0.96302 0.95699 0.99056 1.21090 0.97958 0.92759 0.99055 0.91578 0.87757 0.91595 0.86903 0.86905 0.74792 0.85469 0.85630 0.85967 0.88154 0.85380 0.90173 0.84111 0.86442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.22 10.56 101.05 1.07 1.28 16 2 O -0.35 -3.05 10.57 -39.24 -0.41 -3.47 16 3 C 0.46 4.63 8.03 36.00 0.29 4.92 16 4 O -0.50 -6.37 15.42 -18.75 -0.29 -6.66 16 5 C 0.13 1.27 6.27 -5.19 -0.03 1.24 16 6 N -0.73 -9.12 5.48 -62.46 -0.34 -9.46 16 7 C 0.57 8.89 7.77 -12.37 -0.10 8.79 16 8 O -0.54 -9.55 16.33 5.31 0.09 -9.46 16 9 C -0.17 -2.84 5.88 -104.88 -0.62 -3.46 16 10 C -0.06 -1.02 9.57 -39.25 -0.38 -1.40 16 11 C -0.12 -2.36 9.64 -39.23 -0.38 -2.74 16 12 C 0.06 1.33 5.26 -104.84 -0.55 0.78 16 13 C 0.00 -0.07 6.42 -82.24 -0.53 -0.60 16 14 N -0.45 -10.59 10.15 -9.17 -0.09 -10.69 16 15 C -0.03 -0.64 11.16 -17.36 -0.19 -0.83 16 16 C -0.15 -3.22 10.03 -39.83 -0.40 -3.62 16 17 C -0.13 -3.03 8.72 -38.97 -0.34 -3.37 16 18 C 0.09 2.17 5.54 -106.41 -0.59 1.58 16 19 C -0.44 -10.35 6.73 -37.88 -0.26 -10.61 16 20 H 0.09 2.07 6.47 -52.49 -0.34 1.73 16 21 C 0.07 1.66 5.26 -17.30 -0.09 1.57 16 22 N -0.78 -18.24 10.90 55.56 0.61 -17.64 16 23 Si 0.91 17.08 29.58 -169.99 -5.03 12.05 16 24 H -0.26 -4.82 7.11 56.52 0.40 -4.42 16 25 H -0.28 -5.06 7.11 56.52 0.40 -4.66 16 26 H -0.26 -4.91 7.11 56.52 0.40 -4.51 16 27 C -0.11 -2.06 7.82 -39.23 -0.31 -2.37 16 28 C -0.09 -1.49 9.52 -39.25 -0.37 -1.86 16 29 H 0.07 0.41 8.13 -51.93 -0.42 -0.01 16 30 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.41 8.13 -51.93 -0.42 -0.02 16 32 H 0.11 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.11 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.41 5.05 5.46 -40.82 -0.22 4.83 16 35 H 0.13 2.05 7.64 -52.49 -0.40 1.65 16 36 H 0.13 2.34 8.06 -52.49 -0.42 1.92 16 37 H 0.12 2.32 8.06 -52.49 -0.42 1.90 16 38 H 0.10 1.88 8.06 -52.49 -0.42 1.46 16 39 H 0.13 3.10 6.33 -52.48 -0.33 2.77 16 40 H 0.29 6.09 8.29 -40.82 -0.34 5.75 16 41 H 0.14 2.87 6.75 -52.49 -0.35 2.52 16 42 H 0.12 1.62 6.38 -52.49 -0.34 1.29 16 LS Contribution 366.10 15.07 5.52 5.52 Total: -1.00 -28.99 366.10 -8.23 -37.22 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: -4.50 Total: 13.25 kcal Atomic # 6 Polarization: -6.90 SS G_CDS: -3.77 Total: -10.67 kcal Atomic # 7 Polarization: -37.95 SS G_CDS: 0.17 Total: -37.78 kcal Atomic # 8 Polarization: -18.97 SS G_CDS: -0.62 Total: -19.59 kcal Atomic # 14 Polarization: 17.08 SS G_CDS: -5.03 Total: 12.05 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -28.99 -8.23 -37.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245109830.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.070 kcal (2) G-P(sol) polarization free energy of solvation -28.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds