Wall clock time and date at job start Tue Mar 31 2020 23:45:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34223 * 117.00071 * 2 1 4 4 O 1.20829 * 119.99835 * 359.97438 * 3 2 1 5 5 C 1.50696 * 119.99789 * 180.02562 * 3 2 1 6 6 N 1.46502 * 109.47205 * 179.97438 * 5 3 2 7 7 C 1.34770 * 120.00337 * 179.97438 * 6 5 3 8 8 O 1.21565 * 120.00169 * 0.02562 * 7 6 5 9 9 C 1.47766 * 120.00054 * 180.02562 * 7 6 5 10 10 C 1.39743 * 119.99244 * 180.02562 * 9 7 6 11 11 C 1.37602 * 120.00746 * 179.97438 * 10 9 7 12 12 C 1.39798 * 119.99223 * 359.97438 * 11 10 9 13 13 C 1.47752 * 120.00607 * 179.97438 * 12 11 10 14 14 N 1.32608 * 119.99731 * 316.13115 * 13 12 11 15 15 C 1.31696 * 121.72413 * 179.97438 * 14 13 12 16 16 C 1.38924 * 121.51552 * 0.02562 * 15 14 13 17 17 C 1.36855 * 119.79896 * 359.97438 * 16 15 14 18 18 C 1.41167 * 118.39570 * 0.24144 * 17 16 15 19 19 C 1.40828 * 120.72608 * 179.75281 * 18 17 16 20 20 H 1.08001 * 120.00609 * 151.60398 * 19 18 17 21 21 C 1.40153 * 119.99982 * 331.60560 * 19 18 17 22 22 N 1.30726 * 120.00059 * 348.32548 * 21 19 18 23 23 Si 1.86798 * 120.00362 * 168.32175 * 21 19 18 24 24 H 1.48500 * 109.46897 * 59.99773 * 23 21 19 25 25 H 1.48493 * 109.47428 * 179.97438 * 23 21 19 26 26 H 1.48504 * 109.47176 * 300.00385 * 23 21 19 27 27 C 1.39796 * 119.98646 * 0.27852 * 12 11 10 28 28 C 1.37608 * 119.99373 * 359.42098 * 27 12 11 29 29 H 1.08996 * 109.47560 * 59.99855 * 1 2 3 30 30 H 1.09003 * 109.47318 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46522 * 300.00063 * 1 2 3 32 32 H 1.08995 * 109.47560 * 59.99900 * 5 3 2 33 33 H 1.09004 * 109.47189 * 299.99554 * 5 3 2 34 34 H 0.97009 * 119.99606 * 0.02562 * 6 5 3 35 35 H 1.07997 * 119.99968 * 359.97188 * 10 9 7 36 36 H 1.08002 * 120.00689 * 180.02562 * 11 10 9 37 37 H 1.07998 * 119.23568 * 180.02562 * 15 14 13 38 38 H 1.08001 * 120.09677 * 179.97438 * 16 15 14 39 39 H 1.08004 * 120.80108 * 179.97438 * 17 16 15 40 40 H 0.96995 * 120.00183 * 180.02562 * 22 21 19 41 41 H 1.08001 * 120.00193 * 179.72512 * 27 12 11 42 42 H 1.07998 * 119.99499 * 180.28011 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2747 -0.0006 6 7 3.9818 2.6796 -0.0011 7 6 5.2921 2.9949 -0.0011 8 8 6.1294 2.1135 -0.0012 9 6 5.7111 4.4119 -0.0011 10 6 7.0698 4.7386 -0.0016 11 6 7.4603 6.0580 -0.0021 12 6 6.4976 7.0717 -0.0025 13 6 6.9166 8.4886 -0.0025 14 7 7.8983 8.8897 0.7938 15 6 8.2993 10.1438 0.8210 16 6 7.7123 11.1115 0.0155 17 6 6.6934 10.7659 -0.8303 18 6 6.2653 9.4209 -0.8511 19 6 5.2175 9.0123 -1.6988 20 1 5.1837 7.9968 -2.0649 21 6 4.2185 9.9236 -2.0673 22 7 4.1251 11.0744 -1.4542 23 14 3.0204 9.4938 -3.4345 24 1 2.2690 8.2669 -3.0666 25 1 2.0686 10.6167 -3.6298 26 1 3.7709 9.2556 -4.6936 27 6 5.1385 6.7446 0.0034 28 6 4.7486 5.4249 -0.0024 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3632 0.5139 0.8900 32 1 3.9557 0.7808 -0.8907 33 1 3.9564 0.7805 0.8892 34 1 3.3137 3.3829 -0.0006 35 1 7.8135 3.9555 -0.0017 36 1 8.5104 6.3105 -0.0030 37 1 9.1030 10.4263 1.4848 38 1 8.0591 12.1335 0.0566 39 1 6.2252 11.5052 -1.4633 40 1 3.4334 11.7049 -1.7090 41 1 4.3946 7.5275 0.0076 42 1 3.6986 5.1722 -0.0024 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245109830.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:45:06 Heat of formation + Delta-G solvation = -85.470705 kcal Electronic energy + Delta-G solvation = -27771.858947 eV Core-core repulsion = 23680.833131 eV Total energy + Delta-G solvation = -4091.025816 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.84900 -41.09864 -40.38226 -38.86954 -37.78350 -36.03281 -35.75249 -33.64016 -32.58137 -31.91234 -30.90586 -29.84088 -27.94568 -27.41319 -25.15255 -23.78748 -22.91880 -22.72457 -22.11568 -21.36724 -19.61668 -19.24560 -18.52527 -17.87816 -17.83099 -17.38847 -17.35004 -16.81854 -16.31390 -16.25796 -15.82386 -15.67626 -15.38943 -15.08383 -14.76674 -14.54743 -14.39796 -14.19524 -14.06294 -13.93038 -13.72610 -13.29202 -13.23351 -13.18940 -12.99634 -12.85862 -12.73912 -12.20957 -11.95710 -11.88740 -11.80462 -11.67984 -11.25990 -11.13876 -10.47492 -10.32441 -9.98588 -9.94548 -9.79772 -9.16399 -8.70467 -6.44225 -0.26860 0.55048 0.77983 0.94876 1.05743 1.29049 1.39125 1.48928 1.52558 1.86236 2.15772 2.21281 2.71008 2.95918 3.51073 3.63632 3.72206 3.87236 3.98251 4.08390 4.20204 4.27539 4.32421 4.33752 4.44315 4.48973 4.56917 4.64538 4.71273 4.81587 4.92090 4.98801 5.07005 5.11503 5.19560 5.22937 5.23325 5.36763 5.49808 5.73849 5.81934 5.92272 6.00029 6.05151 6.29394 6.47228 6.49664 6.70541 6.76570 7.01891 7.66890 8.20106 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011562 B = 0.002960 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2421.189523 B = 9456.089577 C =11416.829660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.354 6.354 3 C 0.466 3.534 4 O -0.530 6.530 5 C 0.127 3.873 6 N -0.718 5.718 7 C 0.580 3.420 8 O -0.564 6.564 9 C -0.164 4.164 10 C -0.057 4.057 11 C -0.126 4.126 12 C 0.034 3.966 13 C -0.016 4.016 14 N -0.465 5.465 15 C -0.038 4.038 16 C -0.146 4.146 17 C -0.151 4.151 18 C 0.060 3.940 19 C -0.455 4.455 20 H 0.088 0.912 21 C 0.041 3.959 22 N -0.813 5.813 23 Si 0.975 3.025 24 H -0.254 1.254 25 H -0.267 1.267 26 H -0.261 1.261 27 C -0.114 4.114 28 C -0.077 4.077 29 H 0.063 0.937 30 H 0.135 0.865 31 H 0.064 0.936 32 H 0.129 0.871 33 H 0.130 0.870 34 H 0.415 0.585 35 H 0.142 0.858 36 H 0.124 0.876 37 H 0.153 0.847 38 H 0.131 0.869 39 H 0.119 0.881 40 H 0.294 0.706 41 H 0.125 0.875 42 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.893 -15.914 0.143 17.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.269 6.269 3 C 0.310 3.690 4 O -0.419 6.419 5 C 0.003 3.997 6 N -0.375 5.375 7 C 0.369 3.631 8 O -0.444 6.444 9 C -0.167 4.167 10 C -0.075 4.075 11 C -0.145 4.145 12 C 0.032 3.968 13 C -0.153 4.153 14 N -0.173 5.173 15 C -0.200 4.200 16 C -0.166 4.166 17 C -0.177 4.177 18 C 0.056 3.944 19 C -0.483 4.483 20 H 0.106 0.894 21 C -0.176 4.176 22 N -0.437 5.437 23 Si 0.795 3.205 24 H -0.178 1.178 25 H -0.192 1.192 26 H -0.186 1.186 27 C -0.133 4.133 28 C -0.095 4.095 29 H 0.082 0.918 30 H 0.153 0.847 31 H 0.083 0.917 32 H 0.147 0.853 33 H 0.147 0.853 34 H 0.255 0.745 35 H 0.160 0.840 36 H 0.142 0.858 37 H 0.170 0.830 38 H 0.148 0.852 39 H 0.137 0.863 40 H 0.105 0.895 41 H 0.143 0.857 42 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -7.331 -16.661 0.701 18.216 hybrid contribution -1.312 1.666 -0.973 2.333 sum -8.643 -14.995 -0.272 17.309 Atomic orbital electron populations 1.23630 0.74023 1.06042 1.02777 1.86472 1.25424 1.31604 1.83398 1.23618 0.91977 0.81807 0.71638 1.90702 1.67405 1.37237 1.46602 1.20787 0.86605 0.84280 1.08019 1.45631 1.07570 1.08409 1.75876 1.18070 0.81688 0.88341 0.74978 1.90740 1.52137 1.50019 1.51538 1.19743 0.94572 0.91972 1.10445 1.21125 0.95054 0.95827 0.95530 1.21224 0.99437 0.91810 1.01987 1.18785 0.93475 0.90884 0.93616 1.19899 1.00838 0.93928 1.00593 1.67084 1.11657 1.19049 1.19508 1.22261 1.04342 0.88649 1.04719 1.21766 0.97079 1.00289 0.97457 1.21525 0.97456 0.97299 1.01410 1.18682 0.92294 0.92254 0.91201 1.19734 1.05710 0.98773 1.24122 0.89404 1.26752 0.99638 0.93638 0.97602 1.69746 1.30610 1.07924 1.35451 0.85326 0.77495 0.79516 0.78145 1.17773 1.19152 1.18574 1.21314 0.95337 0.96606 1.00034 1.21283 0.99520 0.91388 0.97313 0.91782 0.84696 0.91735 0.85340 0.85268 0.74512 0.84030 0.85843 0.82978 0.85160 0.86337 0.89509 0.85674 0.83482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.56 113.37 1.20 1.48 16 2 O -0.35 -5.22 10.57 -51.35 -0.54 -5.76 16 3 C 0.47 8.37 8.03 71.23 0.57 8.94 16 4 O -0.53 -12.53 15.42 21.96 0.34 -12.20 16 5 C 0.13 2.14 6.27 85.63 0.54 2.67 16 6 N -0.72 -16.14 5.48 -469.79 -2.57 -18.71 16 7 C 0.58 16.58 7.77 86.76 0.67 17.26 16 8 O -0.56 -18.45 16.33 -3.92 -0.06 -18.51 16 9 C -0.16 -5.21 5.88 -20.03 -0.12 -5.33 16 10 C -0.06 -1.91 9.57 22.48 0.22 -1.69 16 11 C -0.13 -4.84 9.64 22.50 0.22 -4.62 16 12 C 0.03 1.45 5.26 -20.01 -0.11 1.35 16 13 C -0.02 -0.76 6.42 42.45 0.27 -0.49 16 14 N -0.47 -22.36 10.15 -182.93 -1.86 -24.22 16 15 C -0.04 -1.69 11.16 84.88 0.95 -0.74 16 16 C -0.15 -6.41 10.03 22.11 0.22 -6.19 16 17 C -0.15 -7.46 8.72 22.66 0.20 -7.26 16 18 C 0.06 3.07 5.54 -21.02 -0.12 2.96 16 19 C -0.45 -22.13 6.73 23.37 0.16 -21.98 16 20 H 0.09 4.17 6.47 -2.91 -0.02 4.15 16 21 C 0.04 1.87 5.26 85.32 0.45 2.32 16 22 N -0.81 -38.58 10.90 21.86 0.24 -38.34 16 23 Si 0.97 34.88 29.58 68.60 2.03 36.91 16 24 H -0.25 -8.77 7.11 99.48 0.71 -8.07 16 25 H -0.27 -9.10 7.11 99.48 0.71 -8.40 16 26 H -0.26 -9.32 7.11 99.48 0.71 -8.61 16 27 C -0.11 -4.48 7.82 22.50 0.18 -4.30 16 28 C -0.08 -2.44 9.52 22.48 0.21 -2.22 16 29 H 0.06 0.68 8.13 -2.39 -0.02 0.66 16 30 H 0.13 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.06 0.68 8.13 -2.39 -0.02 0.66 16 32 H 0.13 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.13 1.84 8.14 -2.38 -0.02 1.82 16 34 H 0.42 9.11 5.46 -92.70 -0.51 8.61 16 35 H 0.14 4.36 7.64 -2.91 -0.02 4.33 16 36 H 0.12 4.70 8.06 -2.91 -0.02 4.68 16 37 H 0.15 5.59 8.06 -2.91 -0.02 5.57 16 38 H 0.13 4.78 8.06 -2.91 -0.02 4.75 16 39 H 0.12 5.97 6.33 -2.91 -0.02 5.95 16 40 H 0.29 12.62 8.29 -92.71 -0.77 11.86 16 41 H 0.13 5.28 6.75 -2.91 -0.02 5.26 16 42 H 0.15 3.74 6.38 -2.91 -0.02 3.72 16 Total: -1.00 -63.31 366.10 3.86 -59.45 By element: Atomic # 1 Polarization: 38.65 SS G_CDS: 0.58 Total: 39.23 kcal Atomic # 6 Polarization: -23.57 SS G_CDS: 5.71 Total: -17.86 kcal Atomic # 7 Polarization: -77.08 SS G_CDS: -4.19 Total: -81.27 kcal Atomic # 8 Polarization: -36.20 SS G_CDS: -0.27 Total: -36.47 kcal Atomic # 14 Polarization: 34.88 SS G_CDS: 2.03 Total: 36.91 kcal Total: -63.31 3.86 -59.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245109830.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.016 kcal (2) G-P(sol) polarization free energy of solvation -63.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds