Wall clock time and date at job start Tue Mar 31 2020 23:45:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34232 * 117.00339 * 2 1 4 4 O 1.20819 * 119.99726 * 0.02562 * 3 2 1 5 5 C 1.50704 * 119.99971 * 179.97438 * 3 2 1 6 6 N 1.46495 * 109.46763 * 180.02562 * 5 3 2 7 7 C 1.34783 * 119.99798 * 180.02562 * 6 5 3 8 8 O 1.21572 * 119.99980 * 359.71727 * 7 6 5 9 9 C 1.47709 * 119.99882 * 179.97438 * 7 6 5 10 10 C 1.39775 * 119.99409 * 359.44980 * 9 7 6 11 11 C 1.37099 * 120.00108 * 179.71642 * 10 9 7 12 12 C 1.39817 * 119.99506 * 0.55876 * 11 10 9 13 13 C 1.47735 * 120.00594 * 179.69798 * 12 11 10 14 14 C 1.39349 * 120.78901 * 129.73948 * 13 12 11 15 15 N 1.31671 * 120.65821 * 179.67944 * 14 13 12 16 16 C 1.32201 * 122.51055 * 0.63778 * 15 14 13 17 17 C 1.36515 * 121.51450 * 359.65579 * 16 15 14 18 18 C 1.41117 * 119.10877 * 0.02562 * 17 16 15 19 19 C 1.40909 * 121.11400 * 179.97438 * 18 17 16 20 20 H 1.07991 * 120.00289 * 154.86098 * 19 18 17 21 21 C 1.40254 * 119.99679 * 334.86255 * 19 18 17 22 22 N 1.30640 * 119.99923 * 343.99912 * 21 19 18 23 23 Si 1.86798 * 119.99742 * 163.99517 * 21 19 18 24 24 H 1.48502 * 109.46922 * 94.69699 * 23 21 19 25 25 H 1.48493 * 109.46980 * 214.69544 * 23 21 19 26 26 H 1.48504 * 109.47213 * 334.69525 * 23 21 19 27 27 C 1.39816 * 119.98954 * 359.71048 * 12 11 10 28 28 C 1.37096 * 119.99801 * 0.02562 * 27 12 11 29 29 H 1.08996 * 109.47133 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46904 * 299.99918 * 1 2 3 31 31 H 1.09001 * 109.46827 * 59.99372 * 1 2 3 32 32 H 1.09005 * 109.46716 * 60.00468 * 5 3 2 33 33 H 1.09003 * 109.46950 * 300.00626 * 5 3 2 34 34 H 0.97000 * 120.00315 * 359.97438 * 6 5 3 35 35 H 1.07995 * 120.00023 * 359.97438 * 10 9 7 36 36 H 1.08003 * 120.00631 * 180.28981 * 11 10 9 37 37 H 1.08004 * 119.67252 * 0.02562 * 14 13 12 38 38 H 1.07995 * 119.24163 * 179.67221 * 16 15 14 39 39 H 1.08003 * 120.44597 * 180.02562 * 17 16 15 40 40 H 0.97000 * 119.99935 * 180.02562 * 22 21 19 41 41 H 1.08008 * 119.99943 * 180.02562 * 27 12 11 42 42 H 1.08000 * 119.99733 * 179.97438 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4035 2.2093 0.0005 5 6 3.5665 1.2748 0.0006 6 7 3.9818 2.6796 0.0011 7 6 5.2923 2.9948 0.0011 8 8 6.1295 2.1134 0.0060 9 6 5.7111 4.4113 0.0011 10 6 4.7484 5.4246 -0.0107 11 6 5.1369 6.7394 -0.0049 12 6 6.4963 7.0665 0.0010 13 6 6.9152 8.4832 0.0005 14 6 7.8470 8.9518 0.9246 15 7 8.2233 10.2136 0.9179 16 6 7.7394 11.0948 0.0593 17 6 6.8175 10.7407 -0.8833 18 6 6.3724 9.4027 -0.9396 19 6 5.4217 8.9912 -1.8948 20 1 5.3831 7.9585 -2.2080 21 6 4.5257 9.9231 -2.4389 22 7 4.3516 11.0791 -1.8560 23 14 3.5815 9.5110 -3.9971 24 1 2.2494 8.9617 -3.6380 25 1 3.4069 10.7414 -4.8100 26 1 4.3378 8.5024 -4.7821 27 6 7.4591 6.0527 0.0070 28 6 7.0701 4.7381 0.0067 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 3.9565 0.7805 -0.8892 33 1 3.9558 0.7807 0.8908 34 1 3.3138 3.3829 0.0006 35 1 3.6985 5.1719 -0.0201 36 1 4.3931 7.5224 -0.0092 37 1 8.2690 8.2720 1.6501 38 1 8.0815 12.1181 0.1044 39 1 6.4340 11.4747 -1.5766 40 1 3.7316 11.7234 -2.2320 41 1 8.5092 6.3053 0.0120 42 1 7.8138 3.9550 0.0110 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245113356.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:45:23 Heat of formation + Delta-G solvation = -71.591548 kcal Electronic energy + Delta-G solvation = -27714.680392 eV Core-core repulsion = 23624.256421 eV Total energy + Delta-G solvation = -4090.423971 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.03222 -39.89725 -38.79757 -37.52398 -37.00835 -34.71944 -34.36377 -32.35909 -30.85722 -30.20437 -29.70503 -28.48903 -27.05050 -26.12067 -23.65992 -22.31660 -21.57086 -21.37287 -20.95363 -20.02151 -18.53185 -17.79176 -17.68781 -17.11437 -16.55935 -16.03395 -15.79662 -15.33513 -15.29317 -14.70607 -14.58435 -14.52624 -13.99217 -13.92238 -13.68693 -13.34273 -12.98905 -12.90002 -12.86489 -12.66394 -12.47392 -12.38502 -11.93770 -11.70974 -11.56509 -11.32875 -11.27094 -11.05680 -11.01096 -10.60923 -10.45907 -10.03827 -9.85308 -9.61274 -9.39737 -8.71692 -8.53470 -8.13138 -7.99913 -7.49227 -7.04169 -4.77124 1.14518 1.69450 1.93896 2.02645 2.50994 2.67545 2.92097 2.96713 3.10402 3.15507 3.18403 3.70543 4.23807 4.34922 4.46463 4.69001 4.76666 4.83648 4.92477 5.08906 5.11251 5.22259 5.38284 5.50318 5.59747 5.77170 5.83063 5.88243 6.00972 6.10070 6.17271 6.38869 6.52172 6.67826 6.72343 6.74180 6.86368 6.92103 7.16765 7.20001 7.23317 7.35639 7.38110 7.44116 7.69060 7.91616 8.16540 8.26142 8.51081 8.55008 9.48266 9.82837 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011531 B = 0.002885 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2427.739577 B = 9703.250084 C =11519.869682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.355 6.355 3 C 0.458 3.542 4 O -0.500 6.500 5 C 0.130 3.870 6 N -0.728 5.728 7 C 0.574 3.426 8 O -0.545 6.545 9 C -0.176 4.176 10 C -0.085 4.085 11 C -0.112 4.112 12 C 0.064 3.936 13 C -0.250 4.250 14 C 0.137 3.863 15 N -0.578 5.578 16 C 0.084 3.916 17 C -0.208 4.208 18 C 0.147 3.853 19 C -0.438 4.438 20 H 0.088 0.912 21 C 0.078 3.922 22 N -0.773 5.773 23 Si 0.909 3.091 24 H -0.266 1.266 25 H -0.272 1.272 26 H -0.257 1.257 27 C -0.144 4.144 28 C -0.052 4.052 29 H 0.104 0.896 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.113 0.887 33 H 0.113 0.887 34 H 0.413 0.587 35 H 0.117 0.883 36 H 0.135 0.865 37 H 0.123 0.877 38 H 0.119 0.881 39 H 0.126 0.874 40 H 0.287 0.713 41 H 0.124 0.876 42 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.273 -15.440 0.815 17.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.270 6.270 3 C 0.300 3.700 4 O -0.387 6.387 5 C 0.005 3.995 6 N -0.386 5.386 7 C 0.365 3.635 8 O -0.424 6.424 9 C -0.179 4.179 10 C -0.103 4.103 11 C -0.130 4.130 12 C 0.063 3.937 13 C -0.256 4.256 14 C -0.022 4.022 15 N -0.292 5.292 16 C -0.063 4.063 17 C -0.230 4.230 18 C 0.140 3.860 19 C -0.468 4.468 20 H 0.106 0.894 21 C -0.144 4.144 22 N -0.397 5.397 23 Si 0.732 3.268 24 H -0.191 1.191 25 H -0.197 1.197 26 H -0.180 1.180 27 C -0.162 4.162 28 C -0.071 4.071 29 H 0.123 0.877 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.131 0.869 33 H 0.131 0.869 34 H 0.252 0.748 35 H 0.134 0.866 36 H 0.153 0.847 37 H 0.141 0.859 38 H 0.137 0.863 39 H 0.144 0.856 40 H 0.098 0.902 41 H 0.142 0.858 42 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -6.450 -15.208 1.403 16.579 hybrid contribution -1.875 0.095 -1.383 2.332 sum -8.325 -15.113 0.020 17.254 Atomic orbital electron populations 1.23343 0.75512 1.04025 1.02923 1.86478 1.24008 1.32607 1.83951 1.23641 0.91999 0.81817 0.72493 1.90703 1.66795 1.36253 1.44987 1.20577 0.86572 0.85919 1.06457 1.45729 1.08624 1.06851 1.77438 1.18384 0.80925 0.89375 0.74823 1.90744 1.51381 1.49858 1.50377 1.19501 0.94798 0.90902 1.12689 1.21011 0.97978 0.92932 0.98422 1.21260 0.96441 0.95534 0.99725 1.18982 0.92269 0.92664 0.89813 1.19534 1.09331 0.92944 1.03757 1.22124 0.92605 0.92109 0.95368 1.67335 1.30605 1.03024 1.28230 1.21755 0.94817 0.97252 0.92505 1.21925 1.00620 0.98098 1.02323 1.17719 0.88841 0.90541 0.88937 1.19670 1.12119 0.96720 1.18283 0.89361 1.26059 0.96592 0.94020 0.97691 1.69715 1.27914 1.06444 1.35610 0.86261 0.79965 0.79569 0.81015 1.19092 1.19705 1.18014 1.21177 0.99639 0.91751 1.03617 1.20870 0.94202 0.96443 0.95626 0.87742 0.91582 0.91581 0.86905 0.86896 0.74813 0.86551 0.84698 0.85915 0.86320 0.85598 0.90170 0.85793 0.85498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.21 10.56 101.05 1.07 1.28 16 2 O -0.35 -2.98 10.57 -39.26 -0.41 -3.40 16 3 C 0.46 4.52 8.03 36.01 0.29 4.81 16 4 O -0.50 -6.24 15.42 -18.74 -0.29 -6.52 16 5 C 0.13 1.23 6.27 -5.19 -0.03 1.20 16 6 N -0.73 -8.84 5.48 -62.47 -0.34 -9.19 16 7 C 0.57 8.62 7.77 -12.39 -0.10 8.52 16 8 O -0.55 -9.32 16.33 5.30 0.09 -9.24 16 9 C -0.18 -2.81 5.88 -104.88 -0.62 -3.43 16 10 C -0.08 -1.34 9.50 -39.42 -0.37 -1.72 16 11 C -0.11 -2.07 8.02 -39.40 -0.32 -2.38 16 12 C 0.06 1.26 5.00 -104.84 -0.52 0.73 16 13 C -0.25 -5.60 5.53 -104.06 -0.58 -6.18 16 14 C 0.14 3.01 10.71 -17.21 -0.18 2.83 16 15 N -0.58 -13.44 10.32 -13.35 -0.14 -13.58 16 16 C 0.08 1.92 11.09 -18.01 -0.20 1.72 16 17 C -0.21 -5.01 8.73 -39.11 -0.34 -5.35 16 18 C 0.15 3.58 5.59 -106.25 -0.59 2.98 16 19 C -0.44 -10.34 7.29 -37.81 -0.28 -10.62 16 20 H 0.09 2.05 6.69 -52.49 -0.35 1.70 16 21 C 0.08 1.76 5.21 -17.30 -0.09 1.67 16 22 N -0.77 -17.94 10.95 55.56 0.61 -17.33 16 23 Si 0.91 17.07 29.59 -169.99 -5.03 12.04 16 24 H -0.27 -4.94 7.11 56.52 0.40 -4.54 16 25 H -0.27 -5.02 7.11 56.52 0.40 -4.62 16 26 H -0.26 -4.88 7.11 56.52 0.40 -4.48 16 27 C -0.14 -2.51 9.51 -39.41 -0.37 -2.88 16 28 C -0.05 -0.86 9.55 -39.42 -0.38 -1.23 16 29 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.07 0.39 8.13 -51.93 -0.42 -0.03 16 31 H 0.07 0.40 8.13 -51.93 -0.42 -0.02 16 32 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.41 4.89 5.45 -40.82 -0.22 4.67 16 35 H 0.12 1.55 6.38 -52.49 -0.34 1.21 16 36 H 0.14 2.65 7.35 -52.48 -0.39 2.26 16 37 H 0.12 2.37 8.05 -52.48 -0.42 1.95 16 38 H 0.12 2.40 8.06 -52.49 -0.42 1.98 16 39 H 0.13 3.08 6.26 -52.48 -0.33 2.75 16 40 H 0.29 6.04 8.29 -40.82 -0.34 5.70 16 41 H 0.12 2.01 8.05 -52.48 -0.42 1.59 16 42 H 0.13 1.93 7.64 -52.49 -0.40 1.53 16 LS Contribution 367.11 15.07 5.53 5.53 Total: -1.00 -28.97 367.11 -8.14 -37.12 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: -4.54 Total: 12.61 kcal Atomic # 6 Polarization: -4.43 SS G_CDS: -3.62 Total: -8.05 kcal Atomic # 7 Polarization: -40.22 SS G_CDS: 0.13 Total: -40.09 kcal Atomic # 8 Polarization: -18.54 SS G_CDS: -0.62 Total: -19.16 kcal Atomic # 14 Polarization: 17.07 SS G_CDS: -5.03 Total: 12.04 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -28.97 -8.14 -37.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245113356.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.475 kcal (2) G-P(sol) polarization free energy of solvation -28.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds