Wall clock time and date at job start Tue Mar 31 2020 23:45:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34232 * 117.00339 * 2 1 4 4 O 1.20819 * 119.99726 * 0.02562 * 3 2 1 5 5 C 1.50704 * 119.99971 * 179.97438 * 3 2 1 6 6 N 1.46495 * 109.46763 * 180.02562 * 5 3 2 7 7 C 1.34783 * 119.99798 * 180.02562 * 6 5 3 8 8 O 1.21572 * 119.99980 * 359.71727 * 7 6 5 9 9 C 1.47709 * 119.99882 * 179.97438 * 7 6 5 10 10 C 1.39775 * 119.99409 * 359.44980 * 9 7 6 11 11 C 1.37099 * 120.00108 * 179.71642 * 10 9 7 12 12 C 1.39817 * 119.99506 * 0.55876 * 11 10 9 13 13 C 1.47735 * 120.00594 * 179.69798 * 12 11 10 14 14 C 1.39349 * 120.78901 * 129.73948 * 13 12 11 15 15 N 1.31671 * 120.65821 * 179.67944 * 14 13 12 16 16 C 1.32201 * 122.51055 * 0.63778 * 15 14 13 17 17 C 1.36515 * 121.51450 * 359.65579 * 16 15 14 18 18 C 1.41117 * 119.10877 * 0.02562 * 17 16 15 19 19 C 1.40909 * 121.11400 * 179.97438 * 18 17 16 20 20 H 1.07991 * 120.00289 * 154.86098 * 19 18 17 21 21 C 1.40254 * 119.99679 * 334.86255 * 19 18 17 22 22 N 1.30640 * 119.99923 * 343.99912 * 21 19 18 23 23 Si 1.86798 * 119.99742 * 163.99517 * 21 19 18 24 24 H 1.48502 * 109.46922 * 94.69699 * 23 21 19 25 25 H 1.48493 * 109.46980 * 214.69544 * 23 21 19 26 26 H 1.48504 * 109.47213 * 334.69525 * 23 21 19 27 27 C 1.39816 * 119.98954 * 359.71048 * 12 11 10 28 28 C 1.37096 * 119.99801 * 0.02562 * 27 12 11 29 29 H 1.08996 * 109.47133 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46904 * 299.99918 * 1 2 3 31 31 H 1.09001 * 109.46827 * 59.99372 * 1 2 3 32 32 H 1.09005 * 109.46716 * 60.00468 * 5 3 2 33 33 H 1.09003 * 109.46950 * 300.00626 * 5 3 2 34 34 H 0.97000 * 120.00315 * 359.97438 * 6 5 3 35 35 H 1.07995 * 120.00023 * 359.97438 * 10 9 7 36 36 H 1.08003 * 120.00631 * 180.28981 * 11 10 9 37 37 H 1.08004 * 119.67252 * 0.02562 * 14 13 12 38 38 H 1.07995 * 119.24163 * 179.67221 * 16 15 14 39 39 H 1.08003 * 120.44597 * 180.02562 * 17 16 15 40 40 H 0.97000 * 119.99935 * 180.02562 * 22 21 19 41 41 H 1.08008 * 119.99943 * 180.02562 * 27 12 11 42 42 H 1.08000 * 119.99733 * 179.97438 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4035 2.2093 0.0005 5 6 3.5665 1.2748 0.0006 6 7 3.9818 2.6796 0.0011 7 6 5.2923 2.9948 0.0011 8 8 6.1295 2.1134 0.0060 9 6 5.7111 4.4113 0.0011 10 6 4.7484 5.4246 -0.0107 11 6 5.1369 6.7394 -0.0049 12 6 6.4963 7.0665 0.0010 13 6 6.9152 8.4832 0.0005 14 6 7.8470 8.9518 0.9246 15 7 8.2233 10.2136 0.9179 16 6 7.7394 11.0948 0.0593 17 6 6.8175 10.7407 -0.8833 18 6 6.3724 9.4027 -0.9396 19 6 5.4217 8.9912 -1.8948 20 1 5.3831 7.9585 -2.2080 21 6 4.5257 9.9231 -2.4389 22 7 4.3516 11.0791 -1.8560 23 14 3.5815 9.5110 -3.9971 24 1 2.2494 8.9617 -3.6380 25 1 3.4069 10.7414 -4.8100 26 1 4.3378 8.5024 -4.7821 27 6 7.4591 6.0527 0.0070 28 6 7.0701 4.7381 0.0067 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 3.9565 0.7805 -0.8892 33 1 3.9558 0.7807 0.8908 34 1 3.3138 3.3829 0.0006 35 1 3.6985 5.1719 -0.0201 36 1 4.3931 7.5224 -0.0092 37 1 8.2690 8.2720 1.6501 38 1 8.0815 12.1181 0.1044 39 1 6.4340 11.4747 -1.5766 40 1 3.7316 11.7234 -2.2320 41 1 8.5092 6.3053 0.0120 42 1 7.8138 3.9550 0.0110 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245113356.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:45:22 Heat of formation + Delta-G solvation = -87.574503 kcal Electronic energy + Delta-G solvation = -27715.373464 eV Core-core repulsion = 23624.256421 eV Total energy + Delta-G solvation = -4091.117043 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.85483 -41.10155 -40.35339 -38.94558 -37.79168 -36.09562 -35.75525 -33.87663 -32.35247 -31.77098 -30.83252 -29.68416 -28.09310 -27.56358 -25.06443 -23.81277 -22.92398 -22.69621 -22.09600 -21.33780 -19.66304 -19.42809 -18.52347 -17.83779 -17.64615 -17.39375 -17.23013 -16.65925 -16.38521 -16.26925 -16.13792 -15.67860 -15.37623 -14.89868 -14.76916 -14.47659 -14.45000 -14.32580 -14.12885 -14.04156 -13.76101 -13.40241 -13.27999 -13.09674 -13.00057 -12.89611 -12.66344 -12.04159 -11.98492 -11.89401 -11.81193 -11.66494 -11.29870 -11.16706 -10.45130 -10.23214 -9.96822 -9.84746 -9.75408 -9.12984 -8.73204 -6.55592 -0.23274 0.57499 0.85936 0.94188 0.97459 1.28952 1.37690 1.48544 1.54381 1.86784 2.14022 2.21622 2.72685 2.97890 3.51882 3.67606 3.74419 3.96769 3.98279 4.09374 4.19471 4.20086 4.26989 4.31929 4.33120 4.47472 4.54506 4.63272 4.70771 4.93330 4.95649 4.98415 5.07310 5.13110 5.22549 5.24636 5.33624 5.39042 5.50354 5.53836 5.78569 5.91867 6.04441 6.16284 6.29600 6.48713 6.49022 6.74740 6.77683 7.02372 7.70107 8.16155 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011531 B = 0.002885 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2427.739577 B = 9703.250084 C =11519.869682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.354 6.354 3 C 0.466 3.534 4 O -0.530 6.530 5 C 0.127 3.873 6 N -0.719 5.719 7 C 0.578 3.422 8 O -0.565 6.565 9 C -0.170 4.170 10 C -0.074 4.074 11 C -0.120 4.120 12 C 0.037 3.963 13 C -0.251 4.251 14 C 0.127 3.873 15 N -0.591 5.591 16 C 0.079 3.921 17 C -0.230 4.230 18 C 0.119 3.881 19 C -0.455 4.455 20 H 0.086 0.914 21 C 0.044 3.956 22 N -0.801 5.801 23 Si 0.974 3.026 24 H -0.259 1.259 25 H -0.265 1.265 26 H -0.260 1.260 27 C -0.139 4.139 28 C -0.052 4.052 29 H 0.135 0.865 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.128 0.872 33 H 0.130 0.870 34 H 0.415 0.585 35 H 0.143 0.857 36 H 0.117 0.883 37 H 0.148 0.852 38 H 0.140 0.860 39 H 0.116 0.884 40 H 0.295 0.705 41 H 0.134 0.866 42 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.257 -17.926 0.481 19.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.269 6.269 3 C 0.309 3.691 4 O -0.420 6.420 5 C 0.003 3.997 6 N -0.376 5.376 7 C 0.368 3.632 8 O -0.446 6.446 9 C -0.173 4.173 10 C -0.093 4.093 11 C -0.139 4.139 12 C 0.036 3.964 13 C -0.257 4.257 14 C -0.031 4.031 15 N -0.306 5.306 16 C -0.069 4.069 17 C -0.252 4.252 18 C 0.112 3.888 19 C -0.484 4.484 20 H 0.104 0.896 21 C -0.175 4.175 22 N -0.425 5.425 23 Si 0.794 3.206 24 H -0.184 1.184 25 H -0.189 1.189 26 H -0.183 1.183 27 C -0.157 4.157 28 C -0.071 4.071 29 H 0.153 0.847 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.146 0.854 33 H 0.147 0.853 34 H 0.254 0.746 35 H 0.161 0.839 36 H 0.135 0.865 37 H 0.165 0.835 38 H 0.158 0.842 39 H 0.134 0.866 40 H 0.106 0.894 41 H 0.152 0.848 42 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -7.452 -17.725 1.088 19.259 hybrid contribution -1.627 0.710 -1.213 2.150 sum -9.079 -17.015 -0.125 19.286 Atomic orbital electron populations 1.23628 0.74024 1.06044 1.02773 1.86474 1.25424 1.31621 1.83397 1.23630 0.91995 0.81800 0.71629 1.90698 1.67415 1.37240 1.46610 1.20783 0.86575 0.84352 1.07978 1.45644 1.07650 1.08350 1.75932 1.18120 0.81630 0.88500 0.74936 1.90743 1.52123 1.50083 1.51607 1.19737 0.94765 0.91788 1.11060 1.21165 0.99425 0.91673 0.97003 1.21143 0.95690 0.96285 1.00759 1.18958 0.93279 0.91783 0.92344 1.19814 1.08658 0.94273 1.02906 1.22534 0.92650 0.92164 0.95754 1.67392 1.31126 1.03618 1.28428 1.22064 0.94424 0.98299 0.92087 1.21922 1.01827 0.98271 1.03186 1.18099 0.89693 0.91176 0.89862 1.19771 1.12745 0.96951 1.18980 0.89637 1.26785 0.97039 0.93649 1.00023 1.69751 1.28628 1.07297 1.36864 0.85290 0.78656 0.79367 0.77259 1.18359 1.18889 1.18332 1.21232 0.99725 0.91729 1.02979 1.21037 0.94869 0.96194 0.95001 0.84700 0.91715 0.91805 0.85416 0.85269 0.74555 0.83926 0.86514 0.83474 0.84217 0.86629 0.89382 0.84818 0.84053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.56 113.37 1.20 1.47 16 2 O -0.35 -5.11 10.57 -51.43 -0.54 -5.65 16 3 C 0.47 8.18 8.03 71.24 0.57 8.75 16 4 O -0.53 -12.33 15.42 21.98 0.34 -11.99 16 5 C 0.13 2.08 6.27 85.64 0.54 2.61 16 6 N -0.72 -15.66 5.48 -469.82 -2.57 -18.23 16 7 C 0.58 15.94 7.77 86.75 0.67 16.61 16 8 O -0.57 -17.92 16.33 -3.94 -0.06 -17.99 16 9 C -0.17 -5.11 5.88 -20.03 -0.12 -5.23 16 10 C -0.07 -2.24 9.50 22.37 0.21 -2.03 16 11 C -0.12 -4.46 8.02 22.38 0.18 -4.28 16 12 C 0.04 1.48 5.00 -20.00 -0.10 1.38 16 13 C -0.25 -11.47 5.53 -19.50 -0.11 -11.58 16 14 C 0.13 5.60 10.71 84.98 0.91 6.51 16 15 N -0.59 -27.71 10.32 -196.15 -2.02 -29.73 16 16 C 0.08 3.69 11.09 84.23 0.93 4.62 16 17 C -0.23 -11.48 8.73 22.57 0.20 -11.28 16 18 C 0.12 5.98 5.59 -20.92 -0.12 5.87 16 19 C -0.45 -22.00 7.29 23.41 0.17 -21.83 16 20 H 0.09 4.06 6.69 -2.92 -0.02 4.04 16 21 C 0.04 2.02 5.21 85.36 0.44 2.46 16 22 N -0.80 -37.95 10.95 21.88 0.24 -37.71 16 23 Si 0.97 34.88 29.59 68.60 2.03 36.91 16 24 H -0.26 -8.94 7.11 99.48 0.71 -8.23 16 25 H -0.26 -9.07 7.11 99.48 0.71 -8.37 16 26 H -0.26 -9.34 7.11 99.48 0.71 -8.63 16 27 C -0.14 -4.71 9.51 22.38 0.21 -4.49 16 28 C -0.05 -1.61 9.55 22.37 0.21 -1.40 16 29 H 0.13 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.06 0.66 8.13 -2.39 -0.02 0.64 16 31 H 0.06 0.66 8.13 -2.39 -0.02 0.64 16 32 H 0.13 1.79 8.14 -2.38 -0.02 1.77 16 33 H 0.13 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.41 8.84 5.45 -92.71 -0.51 8.33 16 35 H 0.14 3.49 6.38 -2.91 -0.02 3.47 16 36 H 0.12 4.72 7.35 -2.91 -0.02 4.70 16 37 H 0.15 5.61 8.05 -2.91 -0.02 5.59 16 38 H 0.14 5.72 8.06 -2.91 -0.02 5.70 16 39 H 0.12 5.89 6.26 -2.91 -0.02 5.88 16 40 H 0.29 12.56 8.29 -92.71 -0.77 11.79 16 41 H 0.13 4.20 8.05 -2.91 -0.02 4.17 16 42 H 0.14 3.98 7.64 -2.91 -0.02 3.96 16 Total: -1.00 -62.58 367.11 3.99 -58.58 By element: Atomic # 1 Polarization: 37.06 SS G_CDS: 0.58 Total: 37.64 kcal Atomic # 6 Polarization: -17.85 SS G_CDS: 6.01 Total: -11.84 kcal Atomic # 7 Polarization: -81.31 SS G_CDS: -4.36 Total: -85.67 kcal Atomic # 8 Polarization: -35.36 SS G_CDS: -0.27 Total: -35.63 kcal Atomic # 14 Polarization: 34.88 SS G_CDS: 2.03 Total: 36.91 kcal Total: -62.58 3.99 -58.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245113356.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.992 kcal (2) G-P(sol) polarization free energy of solvation -62.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds