Wall clock time and date at job start Tue Mar 31 2020 23:46:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86798 * 119.99975 * 2 1 4 4 H 1.48490 * 109.47339 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47239 * 119.99887 * 3 2 1 6 6 H 1.48504 * 109.46636 * 239.99446 * 3 2 1 7 7 C 1.38798 * 119.99397 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99325 * 179.97438 * 7 2 1 9 9 S 1.76201 * 120.00523 * 0.02562 * 7 2 1 10 10 C 1.80993 * 99.99993 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47026 * 179.97438 * 10 9 7 12 12 O 1.21278 * 120.00136 * 0.02562 * 11 10 9 13 13 N 1.34778 * 119.99723 * 179.97438 * 11 10 9 14 14 C 1.46505 * 119.99792 * 180.02562 * 13 11 10 15 15 H 1.09002 * 110.64027 * 36.68524 * 14 13 11 16 16 C 1.54330 * 110.71746 * 273.54919 * 14 13 11 17 17 N 1.47026 * 107.26992 * 219.44045 * 16 14 13 18 18 C 1.34771 * 125.64923 * 178.90331 * 17 16 14 19 19 O 1.21277 * 119.99977 * 0.02562 * 18 17 16 20 20 C 1.50704 * 119.99923 * 180.02562 * 18 17 16 21 21 H 1.09003 * 115.55026 * 34.42031 * 20 18 17 22 22 C 1.53007 * 117.49805 * 248.74623 * 20 18 17 23 23 C 1.52993 * 117.49528 * 180.08942 * 20 18 17 24 24 C 1.52997 * 138.59236 * 336.59599 * 23 20 18 25 25 C 1.52994 * 138.58577 * 238.37887 * 23 20 18 26 26 C 1.47426 * 108.70100 * 358.94240 * 17 16 14 27 27 C 1.54908 * 104.83643 * 24.12775 * 26 17 16 28 28 H 1.08999 * 111.00430 * 81.05772 * 27 26 17 29 29 O 1.42897 * 111.00970 * 204.91758 * 27 26 17 30 30 H 0.97005 * 119.99723 * 0.02562 * 1 2 3 31 31 H 1.09001 * 109.47224 * 299.99934 * 10 9 7 32 32 H 1.09006 * 109.47317 * 59.99980 * 10 9 7 33 33 H 0.96999 * 120.00719 * 0.02562 * 13 11 10 34 34 H 1.08996 * 109.88207 * 338.85796 * 16 14 13 35 35 H 1.08997 * 109.87994 * 100.02998 * 16 14 13 36 36 H 1.08998 * 117.49811 * 0.02562 * 22 20 18 37 37 H 1.08994 * 117.49707 * 145.00010 * 22 20 18 38 38 H 1.09007 * 117.49471 * 336.59740 * 24 23 20 39 39 H 1.08998 * 117.50167 * 121.61582 * 24 23 20 40 40 H 1.08999 * 117.50056 * 238.38048 * 25 23 20 41 41 H 1.08994 * 117.50045 * 23.38754 * 25 23 20 42 42 H 1.09003 * 110.36457 * 142.96827 * 26 17 16 43 43 H 1.09002 * 110.36848 * 265.28484 * 26 17 16 44 44 H 0.96703 * 113.99932 * 292.19703 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2854 2.7464 -0.0006 5 1 3.1040 1.6964 1.2124 6 1 3.1042 1.6962 -1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 16 1.1292 -2.7280 0.0005 10 6 2.5157 -3.8914 0.0005 11 6 1.9871 -5.3028 0.0012 12 8 0.7909 -5.5023 0.0011 13 7 2.8439 -6.3431 0.0008 14 6 2.3301 -7.7151 0.0008 15 1 1.4291 -7.7880 -0.6083 16 6 2.0555 -8.1952 1.4416 17 7 2.4780 -9.6012 1.5212 18 6 2.4210 -10.3775 2.6214 19 8 1.9918 -9.9247 3.6614 20 6 2.8908 -11.8081 2.5594 21 1 3.7355 -11.9972 1.8970 22 6 1.8319 -12.9054 2.6850 23 6 2.7986 -12.6380 3.8414 24 6 2.7445 -12.4115 5.3535 25 6 3.7270 -13.4271 4.7666 26 6 2.9750 -10.0210 0.1982 27 6 3.4147 -8.7076 -0.4954 28 1 4.4061 -8.4020 -0.1609 29 8 3.3746 -8.8410 -1.9176 30 1 -0.4850 0.8401 -0.0004 31 1 3.1243 -3.7314 -0.8895 32 1 3.1243 -3.7314 0.8906 33 1 3.8007 -6.1836 0.0004 34 1 2.6292 -7.5952 2.1479 35 1 0.9912 -8.1150 1.6625 36 1 0.7955 -12.5925 2.8121 37 1 1.9801 -13.8164 2.1053 38 1 3.1553 -11.4778 5.7376 39 1 1.8791 -12.8005 5.8901 40 1 3.5079 -14.4842 4.9172 41 1 4.7841 -13.1617 4.7644 42 1 3.8249 -10.6947 0.3086 43 1 2.1796 -10.5026 -0.3706 44 1 4.0346 -9.4513 -2.2741 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001281641322.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:46:09 Heat of formation + Delta-G solvation = -46.934771 kcal Electronic energy + Delta-G solvation = -26365.906610 eV Core-core repulsion = 22411.995789 eV Total energy + Delta-G solvation = -3953.910821 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.80644 -39.57982 -38.43577 -37.51568 -35.89140 -34.23176 -33.02205 -32.42429 -30.63675 -29.11245 -28.23520 -25.51764 -24.98071 -23.13805 -22.75624 -21.53517 -20.59825 -20.22023 -19.00001 -18.10785 -17.90834 -17.63191 -16.45766 -16.24552 -15.86087 -15.79873 -15.36627 -15.08387 -14.87146 -14.79826 -14.57058 -14.12816 -13.95004 -13.65613 -13.40244 -13.23068 -12.86890 -12.70281 -12.47206 -12.43607 -12.09733 -11.83900 -11.81045 -11.15189 -11.04330 -11.03450 -10.86021 -10.75878 -10.61629 -10.53304 -10.40451 -10.03943 -9.82974 -9.48939 -9.13808 -9.04915 -8.97559 -8.24587 -6.50028 -6.21111 -3.91981 2.15577 2.35381 2.93870 3.00275 3.23988 3.26241 3.28802 3.30207 3.30744 3.56638 3.66548 3.84423 3.96305 4.18287 4.20617 4.32117 4.40629 4.49480 4.58660 4.81685 4.96157 5.00452 5.04931 5.11713 5.12237 5.13969 5.23899 5.24548 5.27638 5.33239 5.49283 5.57197 5.59082 5.67726 5.78292 5.81756 5.86409 5.88278 6.11815 6.46785 7.08125 7.13731 7.56884 7.59937 7.86095 8.35259 8.51685 9.23953 10.86229 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.020129 B = 0.001998 C = 0.001895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.727920 B =14011.286729 C =14774.351604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.283 1.283 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.537 4.537 8 H 0.072 0.928 9 S -0.058 6.058 10 C -0.153 4.153 11 C 0.535 3.465 12 O -0.511 6.511 13 N -0.728 5.728 14 C 0.148 3.852 15 H 0.115 0.885 16 C 0.098 3.902 17 N -0.613 5.613 18 C 0.556 3.444 19 O -0.524 6.524 20 C -0.139 4.139 21 H 0.123 0.877 22 C -0.098 4.098 23 C -0.203 4.203 24 C -0.113 4.113 25 C -0.129 4.129 26 C 0.073 3.927 27 C 0.085 3.915 28 H 0.082 0.918 29 O -0.544 6.544 30 H 0.269 0.731 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.401 0.599 34 H 0.079 0.921 35 H 0.084 0.916 36 H 0.102 0.898 37 H 0.107 0.893 38 H 0.101 0.899 39 H 0.098 0.902 40 H 0.099 0.901 41 H 0.097 0.903 42 H 0.083 0.917 43 H 0.085 0.915 44 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.202 -29.425 1.849 31.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.208 1.208 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.685 4.685 8 H 0.090 0.910 9 S 0.169 5.831 10 C -0.304 4.304 11 C 0.322 3.678 12 O -0.384 6.384 13 N -0.383 5.383 14 C 0.041 3.959 15 H 0.133 0.867 16 C -0.026 4.026 17 N -0.350 5.350 18 C 0.344 3.656 19 O -0.399 6.399 20 C -0.160 4.160 21 H 0.141 0.859 22 C -0.136 4.136 23 C -0.204 4.204 24 C -0.150 4.150 25 C -0.165 4.165 26 C -0.051 4.051 27 C 0.024 3.976 28 H 0.099 0.901 29 O -0.349 6.349 30 H 0.079 0.921 31 H 0.110 0.890 32 H 0.109 0.891 33 H 0.235 0.765 34 H 0.097 0.903 35 H 0.102 0.898 36 H 0.121 0.879 37 H 0.126 0.874 38 H 0.119 0.881 39 H 0.116 0.884 40 H 0.118 0.882 41 H 0.115 0.885 42 H 0.101 0.899 43 H 0.103 0.897 44 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 9.280 -28.981 2.542 30.537 hybrid contribution 3.006 0.992 -0.229 3.174 sum 12.287 -27.990 2.312 30.655 Atomic orbital electron populations 1.70011 1.05944 1.27583 1.46700 1.24996 0.95040 0.99033 0.94524 0.86216 0.79228 0.81227 0.78781 1.20807 1.19943 1.19947 1.22822 0.94875 0.91643 1.59141 0.90955 1.85420 1.04711 0.96278 1.96728 1.23531 1.06746 0.95045 1.05060 1.20384 0.86513 0.86260 0.74663 1.90719 1.15280 1.85451 1.46962 1.45902 1.10065 1.04286 1.78010 1.21756 0.98023 0.81411 0.94669 0.86743 1.22469 1.02154 0.80992 0.96995 1.48205 1.64298 1.12667 1.09815 1.19384 0.78109 0.86078 0.81986 1.90744 1.45708 1.74270 1.29223 1.21912 1.03134 0.89814 1.01104 0.85926 1.22687 0.95227 0.97565 0.98081 1.21195 1.05165 1.04760 0.89244 1.22627 1.00837 1.00337 0.91173 1.22775 0.96315 0.97370 1.00065 1.23016 1.00213 0.97633 0.84249 1.23168 0.98715 0.93914 0.81780 0.90064 1.86649 1.61142 1.68502 1.18601 0.92112 0.89035 0.89096 0.76483 0.90310 0.89773 0.87922 0.87434 0.88095 0.88375 0.88235 0.88509 0.89872 0.89679 0.76984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.26 13.22 55.49 0.73 -25.53 16 2 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 3 Si 0.92 21.47 29.55 -169.99 -5.02 16.45 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 6 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.54 -15.30 9.50 30.94 0.29 -15.01 16 8 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 9 S -0.06 -1.57 20.57 -107.50 -2.21 -3.79 16 10 C -0.15 -3.06 6.16 36.01 0.22 -2.83 16 11 C 0.54 9.83 7.84 -10.98 -0.09 9.74 16 12 O -0.51 -11.46 15.59 5.56 0.09 -11.38 16 13 N -0.73 -9.42 5.13 -52.02 -0.27 -9.68 16 14 C 0.15 1.71 2.97 -66.09 -0.20 1.52 16 15 H 0.11 1.60 7.69 -51.93 -0.40 1.20 16 16 C 0.10 1.20 6.62 -3.06 -0.02 1.18 16 17 N -0.61 -6.20 3.33 -170.52 -0.57 -6.77 16 18 C 0.56 6.45 7.63 -10.99 -0.08 6.37 16 19 O -0.52 -8.28 16.57 5.56 0.09 -8.19 16 20 C -0.14 -1.12 5.53 -91.77 -0.51 -1.62 16 21 H 0.12 0.67 7.07 -51.93 -0.37 0.31 16 22 C -0.10 -0.69 10.24 -26.69 -0.27 -0.96 16 23 C -0.20 -1.69 5.06 -154.48 -0.78 -2.47 16 24 C -0.11 -0.96 10.16 -26.73 -0.27 -1.23 16 25 C -0.13 -0.81 10.53 -26.73 -0.28 -1.09 16 26 C 0.07 0.46 6.43 -2.53 -0.02 0.45 16 27 C 0.08 0.62 4.04 -24.58 -0.10 0.52 16 28 H 0.08 0.46 8.00 -51.93 -0.42 0.05 16 29 O -0.54 -4.00 13.47 -35.23 -0.47 -4.48 16 30 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 31 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 32 H 0.09 1.67 8.14 -51.91 -0.42 1.24 16 33 H 0.40 3.94 8.52 -40.82 -0.35 3.60 16 34 H 0.08 1.04 8.03 -51.93 -0.42 0.62 16 35 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.11 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.08 0.30 7.00 -51.93 -0.36 -0.07 16 43 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.38 0.85 9.12 45.56 0.42 1.27 16 LS Contribution 389.92 15.07 5.88 5.88 Total: -1.00 -38.41 389.92 -9.62 -48.03 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -5.67 Total: 2.89 kcal Atomic # 6 Polarization: -1.23 SS G_CDS: -2.20 Total: -3.43 kcal Atomic # 7 Polarization: -41.88 SS G_CDS: -0.10 Total: -41.98 kcal Atomic # 8 Polarization: -23.75 SS G_CDS: -0.30 Total: -24.05 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: -1.57 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -38.41 -9.62 -48.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281641322.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.093 kcal (2) G-P(sol) polarization free energy of solvation -38.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds