Wall clock time and date at job start Tue Mar 31 2020 23:46:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86798 * 119.99975 * 2 1 4 4 H 1.48490 * 109.47339 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47239 * 119.99887 * 3 2 1 6 6 H 1.48504 * 109.46636 * 239.99446 * 3 2 1 7 7 C 1.38798 * 119.99397 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99325 * 179.97438 * 7 2 1 9 9 S 1.76201 * 120.00523 * 0.02562 * 7 2 1 10 10 C 1.80993 * 99.99993 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47026 * 179.97438 * 10 9 7 12 12 O 1.21278 * 120.00136 * 0.02562 * 11 10 9 13 13 N 1.34778 * 119.99723 * 179.97438 * 11 10 9 14 14 C 1.46505 * 119.99792 * 180.02562 * 13 11 10 15 15 H 1.09002 * 110.64027 * 36.68524 * 14 13 11 16 16 C 1.54330 * 110.71746 * 273.54919 * 14 13 11 17 17 N 1.47026 * 107.26992 * 219.44045 * 16 14 13 18 18 C 1.34771 * 125.64923 * 178.90331 * 17 16 14 19 19 O 1.21277 * 119.99977 * 0.02562 * 18 17 16 20 20 C 1.50704 * 119.99923 * 180.02562 * 18 17 16 21 21 H 1.09003 * 115.55026 * 34.42031 * 20 18 17 22 22 C 1.53007 * 117.49805 * 248.74623 * 20 18 17 23 23 C 1.52993 * 117.49528 * 180.08942 * 20 18 17 24 24 C 1.52997 * 138.59236 * 336.59599 * 23 20 18 25 25 C 1.52994 * 138.58577 * 238.37887 * 23 20 18 26 26 C 1.47426 * 108.70100 * 358.94240 * 17 16 14 27 27 C 1.54908 * 104.83643 * 24.12775 * 26 17 16 28 28 H 1.08999 * 111.00430 * 81.05772 * 27 26 17 29 29 O 1.42897 * 111.00970 * 204.91758 * 27 26 17 30 30 H 0.97005 * 119.99723 * 0.02562 * 1 2 3 31 31 H 1.09001 * 109.47224 * 299.99934 * 10 9 7 32 32 H 1.09006 * 109.47317 * 59.99980 * 10 9 7 33 33 H 0.96999 * 120.00719 * 0.02562 * 13 11 10 34 34 H 1.08996 * 109.88207 * 338.85796 * 16 14 13 35 35 H 1.08997 * 109.87994 * 100.02998 * 16 14 13 36 36 H 1.08998 * 117.49811 * 0.02562 * 22 20 18 37 37 H 1.08994 * 117.49707 * 145.00010 * 22 20 18 38 38 H 1.09007 * 117.49471 * 336.59740 * 24 23 20 39 39 H 1.08998 * 117.50167 * 121.61582 * 24 23 20 40 40 H 1.08999 * 117.50056 * 238.38048 * 25 23 20 41 41 H 1.08994 * 117.50045 * 23.38754 * 25 23 20 42 42 H 1.09003 * 110.36457 * 142.96827 * 26 17 16 43 43 H 1.09002 * 110.36848 * 265.28484 * 26 17 16 44 44 H 0.96703 * 113.99932 * 292.19703 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2854 2.7464 -0.0006 5 1 3.1040 1.6964 1.2124 6 1 3.1042 1.6962 -1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 16 1.1292 -2.7280 0.0005 10 6 2.5157 -3.8914 0.0005 11 6 1.9871 -5.3028 0.0012 12 8 0.7909 -5.5023 0.0011 13 7 2.8439 -6.3431 0.0008 14 6 2.3301 -7.7151 0.0008 15 1 1.4291 -7.7880 -0.6083 16 6 2.0555 -8.1952 1.4416 17 7 2.4780 -9.6012 1.5212 18 6 2.4210 -10.3775 2.6214 19 8 1.9918 -9.9247 3.6614 20 6 2.8908 -11.8081 2.5594 21 1 3.7355 -11.9972 1.8970 22 6 1.8319 -12.9054 2.6850 23 6 2.7986 -12.6380 3.8414 24 6 2.7445 -12.4115 5.3535 25 6 3.7270 -13.4271 4.7666 26 6 2.9750 -10.0210 0.1982 27 6 3.4147 -8.7076 -0.4954 28 1 4.4061 -8.4020 -0.1609 29 8 3.3746 -8.8410 -1.9176 30 1 -0.4850 0.8401 -0.0004 31 1 3.1243 -3.7314 -0.8895 32 1 3.1243 -3.7314 0.8906 33 1 3.8007 -6.1836 0.0004 34 1 2.6292 -7.5952 2.1479 35 1 0.9912 -8.1150 1.6625 36 1 0.7955 -12.5925 2.8121 37 1 1.9801 -13.8164 2.1053 38 1 3.1553 -11.4778 5.7376 39 1 1.8791 -12.8005 5.8901 40 1 3.5079 -14.4842 4.9172 41 1 4.7841 -13.1617 4.7644 42 1 3.8249 -10.6947 0.3086 43 1 2.1796 -10.5026 -0.3706 44 1 4.0346 -9.4513 -2.2741 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001281641322.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:46:08 Heat of formation + Delta-G solvation = -77.613961 kcal Electronic energy + Delta-G solvation = -26367.236959 eV Core-core repulsion = 22411.995789 eV Total energy + Delta-G solvation = -3955.241171 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.69261 -40.69878 -39.41182 -38.24644 -36.62098 -35.45327 -34.59012 -33.64743 -31.87666 -30.06287 -29.32644 -27.67220 -25.83698 -23.83397 -23.30000 -22.43235 -21.84377 -20.96715 -19.94763 -19.61517 -18.77261 -18.55897 -17.79525 -17.18097 -16.95107 -16.88155 -16.62444 -16.40372 -15.96148 -15.90623 -15.54173 -15.21552 -15.07655 -14.77233 -14.51056 -14.37600 -14.00445 -13.78660 -13.57810 -13.38561 -13.18150 -13.14156 -12.86775 -12.69802 -12.63905 -12.37925 -11.89898 -11.73250 -11.48983 -11.20820 -11.13516 -11.13255 -11.00158 -10.97248 -10.85430 -10.32463 -10.29394 -9.86890 -8.68273 -8.35142 -6.13753 1.22286 1.33107 1.42049 1.43609 1.48703 1.53967 1.65205 2.17864 2.26875 2.69046 2.73123 2.97411 2.98913 3.18736 3.28844 3.30770 3.53487 3.67841 3.78929 3.88512 3.92679 4.01825 4.08155 4.19718 4.28860 4.41661 4.46258 4.48275 4.55400 4.64883 4.66686 4.73406 4.76580 4.79819 4.83818 4.95229 5.00822 5.05434 5.25615 5.31087 5.40900 6.18899 6.29731 6.38693 6.88843 6.99688 7.05803 7.14659 8.73834 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.020129 B = 0.001998 C = 0.001895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.727920 B =14011.286729 C =14774.351604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.012 3.988 3 Si 1.000 3.000 4 H -0.280 1.280 5 H -0.262 1.262 6 H -0.260 1.260 7 C -0.546 4.546 8 H 0.085 0.915 9 S -0.153 6.153 10 C -0.129 4.129 11 C 0.537 3.463 12 O -0.561 6.561 13 N -0.701 5.701 14 C 0.143 3.857 15 H 0.087 0.913 16 C 0.103 3.897 17 N -0.610 5.610 18 C 0.546 3.454 19 O -0.581 6.581 20 C -0.135 4.135 21 H 0.161 0.839 22 C -0.087 4.087 23 C -0.229 4.229 24 C -0.141 4.141 25 C -0.098 4.098 26 C 0.074 3.926 27 C 0.104 3.896 28 H 0.111 0.889 29 O -0.562 6.562 30 H 0.271 0.729 31 H 0.114 0.886 32 H 0.112 0.888 33 H 0.420 0.580 34 H 0.067 0.933 35 H 0.047 0.953 36 H 0.084 0.916 37 H 0.142 0.858 38 H 0.078 0.922 39 H 0.097 0.903 40 H 0.120 0.880 41 H 0.107 0.893 42 H 0.128 0.872 43 H 0.091 0.909 44 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.204 -31.568 0.514 35.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.193 4.193 3 Si 0.821 3.179 4 H -0.205 1.205 5 H -0.187 1.187 6 H -0.185 1.185 7 C -0.694 4.694 8 H 0.103 0.897 9 S 0.074 5.926 10 C -0.280 4.280 11 C 0.323 3.677 12 O -0.438 6.438 13 N -0.356 5.356 14 C 0.036 3.964 15 H 0.105 0.895 16 C -0.022 4.022 17 N -0.344 5.344 18 C 0.337 3.663 19 O -0.460 6.460 20 C -0.156 4.156 21 H 0.178 0.822 22 C -0.124 4.124 23 C -0.229 4.229 24 C -0.178 4.178 25 C -0.135 4.135 26 C -0.048 4.048 27 C 0.043 3.957 28 H 0.128 0.872 29 O -0.371 6.371 30 H 0.080 0.920 31 H 0.132 0.868 32 H 0.130 0.870 33 H 0.259 0.741 34 H 0.085 0.915 35 H 0.066 0.934 36 H 0.102 0.898 37 H 0.160 0.840 38 H 0.096 0.904 39 H 0.115 0.885 40 H 0.138 0.862 41 H 0.125 0.875 42 H 0.146 0.854 43 H 0.109 0.891 44 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges 13.367 -31.189 1.159 33.952 hybrid contribution 1.760 1.544 0.184 2.349 sum 15.127 -29.645 1.343 33.308 Atomic orbital electron populations 1.70188 1.08014 1.28673 1.47932 1.26162 0.95989 1.03418 0.93737 0.84984 0.77776 0.75583 0.79530 1.20465 1.18686 1.18497 1.23175 0.95389 0.91887 1.58969 0.89737 1.85630 1.10556 0.99356 1.97071 1.23362 1.03636 0.93904 1.07063 1.20161 0.86231 0.86782 0.74542 1.90710 1.17464 1.86011 1.49635 1.45574 1.10437 1.03858 1.75687 1.21790 0.99229 0.81329 0.94008 0.89467 1.22165 0.99880 0.82936 0.97260 1.48267 1.63564 1.11409 1.11205 1.20199 0.77192 0.87554 0.81342 1.90719 1.48261 1.75595 1.31457 1.21999 1.04596 0.87105 1.01878 0.82179 1.22791 0.93947 0.98164 0.97486 1.21482 1.06676 1.05682 0.89074 1.22606 1.02292 1.00714 0.92218 1.22852 0.96116 0.97629 0.96877 1.23298 1.01966 0.97798 0.81770 1.23012 0.97977 0.92438 0.82260 0.87182 1.86600 1.62686 1.69644 1.18165 0.92011 0.86771 0.87032 0.74129 0.91473 0.93406 0.89761 0.84030 0.90355 0.88463 0.86223 0.87455 0.85374 0.89096 0.73979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.71 13.22 21.65 0.29 -56.42 16 2 C 0.01 0.67 5.49 84.86 0.47 1.13 16 3 Si 1.00 43.89 29.55 68.60 2.03 45.92 16 4 H -0.28 -11.99 7.11 99.48 0.71 -11.29 16 5 H -0.26 -10.92 7.11 99.48 0.71 -10.22 16 6 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 7 C -0.55 -31.40 9.50 67.95 0.65 -30.76 16 8 H 0.08 4.47 7.80 -2.91 -0.02 4.44 16 9 S -0.15 -8.62 20.57 -56.49 -1.16 -9.78 16 10 C -0.13 -5.09 6.16 71.24 0.44 -4.65 16 11 C 0.54 19.94 7.84 87.66 0.69 20.63 16 12 O -0.56 -26.49 15.59 -3.02 -0.05 -26.54 16 13 N -0.70 -17.42 5.13 -436.89 -2.24 -19.66 16 14 C 0.14 3.23 2.97 46.18 0.14 3.37 16 15 H 0.09 2.52 7.69 -2.39 -0.02 2.50 16 16 C 0.10 2.62 6.62 86.73 0.57 3.20 16 17 N -0.61 -11.70 3.33 -811.78 -2.70 -14.40 16 18 C 0.55 12.49 7.63 87.66 0.67 13.16 16 19 O -0.58 -19.46 16.57 -3.02 -0.05 -19.51 16 20 C -0.14 -1.83 5.53 -11.54 -0.06 -1.90 16 21 H 0.16 0.91 7.07 -2.39 -0.02 0.90 16 22 C -0.09 -1.02 10.24 30.62 0.31 -0.70 16 23 C -0.23 -3.42 5.06 -52.16 -0.26 -3.68 16 24 C -0.14 -2.44 10.16 30.59 0.31 -2.13 16 25 C -0.10 -1.01 10.53 30.59 0.32 -0.68 16 26 C 0.07 0.67 6.43 86.85 0.56 1.23 16 27 C 0.10 1.16 4.04 31.99 0.13 1.28 16 28 H 0.11 0.68 8.00 -2.39 -0.02 0.66 16 29 O -0.56 -6.19 13.47 -148.98 -2.01 -8.19 16 30 H 0.27 15.68 8.31 -92.70 -0.77 14.91 16 31 H 0.11 4.01 8.14 -2.39 -0.02 3.99 16 32 H 0.11 3.95 8.14 -2.39 -0.02 3.94 16 33 H 0.42 7.12 8.52 -92.71 -0.79 6.33 16 34 H 0.07 1.85 8.03 -2.39 -0.02 1.83 16 35 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.14 0.69 8.14 -2.39 -0.02 0.67 16 38 H 0.08 1.66 8.14 -2.38 -0.02 1.64 16 39 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.12 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.13 0.12 7.00 -2.39 -0.02 0.10 16 43 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 44 H 0.41 -0.13 9.12 -74.06 -0.68 -0.81 16 Total: -1.00 -91.42 389.92 -1.39 -92.81 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: -0.42 Total: 16.27 kcal Atomic # 6 Polarization: -5.42 SS G_CDS: 4.92 Total: -0.50 kcal Atomic # 7 Polarization: -85.83 SS G_CDS: -4.66 Total: -90.48 kcal Atomic # 8 Polarization: -52.14 SS G_CDS: -2.10 Total: -54.24 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Atomic # 16 Polarization: -8.62 SS G_CDS: -1.16 Total: -9.78 kcal Total: -91.42 -1.39 -92.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281641322.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.197 kcal (2) G-P(sol) polarization free energy of solvation -91.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds