Wall clock time and date at job start Tue Mar 31 2020 23:59:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86795 * 120.00056 * 2 1 4 4 H 1.48503 * 109.47420 * 270.00400 * 3 2 1 5 5 H 1.48504 * 109.47183 * 30.00757 * 3 2 1 6 6 H 1.48504 * 109.46991 * 150.00379 * 3 2 1 7 7 C 1.38810 * 119.99636 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99736 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00229 * 359.97438 * 7 2 1 10 10 C 1.46506 * 119.99934 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.47007 * 34.99166 * 10 9 7 12 12 C 1.53003 * 109.46609 * 274.99832 * 10 9 7 13 13 O 1.42902 * 109.46730 * 294.99729 * 12 10 9 14 14 C 1.52996 * 109.47012 * 154.99714 * 10 9 7 15 15 N 1.46498 * 109.47059 * 304.99483 * 14 10 9 16 16 C 1.34777 * 119.99828 * 179.72339 * 15 14 10 17 17 O 1.21283 * 120.00222 * 0.28168 * 16 15 14 18 18 C 1.50703 * 120.00290 * 180.27728 * 16 15 14 19 19 C 1.52990 * 109.47398 * 180.02562 * 18 16 15 20 20 C 1.52995 * 109.47353 * 179.97438 * 19 18 16 21 21 C 1.50702 * 109.47846 * 180.02562 * 20 19 18 22 22 C 1.38238 * 119.98959 * 269.73610 * 21 20 19 23 23 C 1.38209 * 120.01372 * 179.72170 * 22 21 20 24 24 C 1.38352 * 119.98778 * 0.54255 * 23 22 21 25 25 Cl 1.73599 * 120.01493 * 179.70507 * 24 23 22 26 26 C 1.38347 * 119.97213 * 359.72500 * 24 23 22 27 27 C 1.38216 * 119.98763 * 0.02562 * 26 24 23 28 28 H 0.97001 * 119.99765 * 359.97438 * 1 2 3 29 29 H 0.97000 * 119.99675 * 359.97438 * 9 7 2 30 30 H 1.08992 * 109.47566 * 55.00059 * 12 10 9 31 31 H 1.08998 * 109.46886 * 175.00317 * 12 10 9 32 32 H 0.96705 * 113.99732 * 180.02562 * 13 12 10 33 33 H 1.09004 * 109.47066 * 184.99751 * 14 10 9 34 34 H 1.08994 * 109.46974 * 64.99899 * 14 10 9 35 35 H 0.97001 * 120.00384 * 0.02562 * 15 14 10 36 36 H 1.08998 * 109.46954 * 300.00581 * 18 16 15 37 37 H 1.09002 * 109.46946 * 59.99717 * 18 16 15 38 38 H 1.08998 * 109.47508 * 300.00200 * 19 18 16 39 39 H 1.09011 * 109.47182 * 60.00188 * 19 18 16 40 40 H 1.08999 * 109.47616 * 300.00389 * 20 19 18 41 41 H 1.09003 * 109.47280 * 60.00024 * 20 19 18 42 42 H 1.08007 * 119.99190 * 359.97438 * 22 21 20 43 43 H 1.08003 * 120.00915 * 180.26913 * 23 22 21 44 44 H 1.08002 * 120.00735 * 179.97438 * 26 24 23 45 45 H 1.07999 * 119.99588 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4478 2.6526 0.7002 6 1 3.5479 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6569 -0.0005 11 1 2.9688 -3.5505 0.5888 12 6 2.4218 -4.0356 -1.4376 13 8 1.2275 -4.2885 -2.1803 14 6 1.1809 -4.7521 0.6091 15 7 0.7344 -4.3355 1.9408 16 6 -0.0595 -5.1450 2.6693 17 8 -0.4002 -6.2207 2.2245 18 6 -0.5239 -4.7138 4.0366 19 6 -1.4051 -5.8069 4.6442 20 6 -1.8760 -5.3694 6.0325 21 6 -2.7435 -6.4464 6.6314 22 6 -4.1099 -6.4291 6.4221 23 6 -4.9052 -7.4198 6.9664 24 6 -4.3351 -8.4227 7.7301 25 17 -5.3344 -9.6630 8.4204 26 6 -2.9683 -8.4364 7.9438 27 6 -2.1733 -7.4480 7.3948 28 1 -0.4850 0.8401 0.0004 29 1 0.3555 -2.3880 0.0002 30 1 2.9714 -3.2165 -1.9013 31 1 3.0423 -4.9317 -1.4312 32 1 1.3826 -4.5352 -3.1025 33 1 1.7558 -5.6746 0.6908 34 1 0.3133 -4.9200 -0.0290 35 1 1.0066 -3.4750 2.2964 36 1 0.3412 -4.5465 4.6781 37 1 -1.0968 -3.7904 3.9512 38 1 -2.2703 -5.9746 4.0028 39 1 -0.8318 -6.7302 4.7296 40 1 -1.0107 -5.2020 6.6738 41 1 -2.4492 -4.4462 5.9476 42 1 -4.5554 -5.6435 5.8298 43 1 -5.9722 -7.4086 6.7992 44 1 -2.5227 -9.2188 8.5403 45 1 -1.1064 -7.4584 7.5619 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001283769475.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:59:04 Heat of formation + Delta-G solvation = -78.783627 kcal Electronic energy + Delta-G solvation = -25829.551876 eV Core-core repulsion = 21872.216278 eV Total energy + Delta-G solvation = -3957.335597 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.81545 -39.29235 -37.17447 -36.85329 -35.07054 -34.69497 -33.45019 -31.59755 -31.36381 -31.03099 -28.46528 -27.15501 -25.02283 -23.67252 -23.14733 -22.60115 -21.02922 -20.12506 -19.70248 -17.64965 -17.41271 -16.68053 -16.52028 -16.17461 -15.78199 -15.50031 -15.38115 -14.68961 -14.14718 -14.11783 -13.97697 -13.82256 -13.73376 -13.41508 -13.32407 -13.07325 -12.84155 -12.63838 -12.24852 -11.92594 -11.90321 -11.62413 -11.40985 -11.35230 -11.21639 -11.11420 -10.89766 -10.88144 -10.73172 -10.57132 -10.13069 -9.81882 -9.51680 -9.35562 -9.34113 -9.00707 -8.81716 -8.54192 -7.06512 -5.84501 -3.14829 0.84098 0.99429 1.84028 3.02417 3.30285 3.36531 3.41893 3.43900 3.65765 4.44299 4.48127 4.50062 4.58819 4.87239 4.91133 4.94621 5.03284 5.12370 5.14154 5.34867 5.39250 5.41951 5.50750 5.54365 5.59118 5.64772 5.65167 5.70926 5.89099 5.92434 5.95729 6.01423 6.02948 6.04939 6.27143 6.32835 6.37495 6.49926 6.51609 6.74302 6.95677 7.59412 8.00105 8.19304 8.32568 8.65052 9.44789 10.00253 10.36912 11.36995 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.016621 B = 0.001768 C = 0.001661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.252068 B =15829.115331 C =16849.887260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.009 4.009 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.248 4.248 8 H 0.070 0.930 9 N -0.713 5.713 10 C 0.165 3.835 11 H 0.065 0.935 12 C 0.059 3.941 13 O -0.560 6.560 14 C 0.119 3.881 15 N -0.714 5.714 16 C 0.508 3.492 17 O -0.557 6.557 18 C -0.142 4.142 19 C -0.095 4.095 20 C -0.085 4.085 21 C -0.070 4.070 22 C -0.104 4.104 23 C -0.108 4.108 24 C -0.042 4.042 25 Cl -0.077 7.077 26 C -0.109 4.109 27 C -0.105 4.105 28 H 0.256 0.744 29 H 0.389 0.611 30 H 0.048 0.952 31 H 0.026 0.974 32 H 0.364 0.636 33 H 0.059 0.941 34 H 0.074 0.926 35 H 0.409 0.591 36 H 0.091 0.909 37 H 0.096 0.904 38 H 0.072 0.928 39 H 0.070 0.930 40 H 0.076 0.924 41 H 0.078 0.922 42 H 0.133 0.867 43 H 0.132 0.868 44 H 0.131 0.869 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.049 -14.751 14.761 21.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.205 4.205 3 Si 0.737 3.263 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.379 4.379 8 H 0.088 0.912 9 N -0.354 5.354 10 C 0.054 3.946 11 H 0.083 0.917 12 C -0.022 4.022 13 O -0.363 6.363 14 C -0.006 4.006 15 N -0.366 5.366 16 C 0.294 3.706 17 O -0.436 6.436 18 C -0.182 4.182 19 C -0.133 4.133 20 C -0.123 4.123 21 C -0.070 4.070 22 C -0.122 4.122 23 C -0.127 4.127 24 C -0.069 4.069 25 Cl -0.049 7.049 26 C -0.128 4.128 27 C -0.123 4.123 28 H 0.066 0.934 29 H 0.223 0.777 30 H 0.066 0.934 31 H 0.044 0.956 32 H 0.208 0.792 33 H 0.077 0.923 34 H 0.093 0.907 35 H 0.245 0.755 36 H 0.109 0.891 37 H 0.114 0.886 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.095 0.905 41 H 0.096 0.904 42 H 0.151 0.849 43 H 0.150 0.850 44 H 0.149 0.851 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -4.533 -15.311 15.103 21.979 hybrid contribution 0.553 1.179 -0.540 1.410 sum -3.981 -14.132 14.563 20.679 Atomic orbital electron populations 1.69682 1.05072 1.25721 1.56818 1.24753 0.95473 0.97660 1.02649 0.86220 0.78616 0.83915 0.77527 1.21778 1.21773 1.20782 1.19215 0.90907 0.84068 1.43683 0.91216 1.42368 1.06043 0.99023 1.88001 1.20597 0.95052 0.87076 0.91878 0.91716 1.23032 0.86495 0.97225 0.95452 1.86573 1.32168 1.91887 1.25717 1.21512 0.99415 0.96709 0.82958 1.46034 1.50563 1.21926 1.18038 1.20600 0.78281 0.84507 0.87166 1.90664 1.57222 1.22968 1.72756 1.21673 1.01399 1.00916 0.94210 1.21282 0.99899 0.98023 0.94135 1.20716 0.98744 0.96259 0.96536 1.20058 0.94121 0.96420 0.96372 1.21091 0.93116 0.98583 0.99418 1.21062 1.00694 0.93673 0.97266 1.20925 0.91857 0.93050 1.01031 1.98367 1.69631 1.53232 1.83637 1.21043 0.91552 0.99597 1.00596 1.21053 1.00080 0.93850 0.97337 0.93433 0.77681 0.93362 0.95564 0.79165 0.92320 0.90738 0.75472 0.89075 0.88582 0.90953 0.91135 0.90542 0.90364 0.84876 0.85003 0.85065 0.85016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.80 13.06 55.49 0.72 -26.08 16 2 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 3 Si 0.91 21.35 29.55 -169.99 -5.02 16.32 16 4 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.25 -6.39 9.93 -15.06 -0.15 -6.54 16 8 H 0.07 1.73 7.83 -52.49 -0.41 1.32 16 9 N -0.71 -16.64 4.51 -53.42 -0.24 -16.88 16 10 C 0.17 3.09 2.84 -67.93 -0.19 2.89 16 11 H 0.07 1.15 8.08 -51.93 -0.42 0.73 16 12 C 0.06 1.02 6.86 37.16 0.25 1.27 16 13 O -0.56 -10.00 12.64 -35.23 -0.45 -10.44 16 14 C 0.12 2.10 5.12 -4.04 -0.02 2.08 16 15 N -0.71 -11.80 5.39 -60.30 -0.32 -12.13 16 16 C 0.51 8.15 7.83 -10.98 -0.09 8.06 16 17 O -0.56 -10.79 15.98 5.55 0.09 -10.70 16 18 C -0.14 -1.64 5.70 -27.89 -0.16 -1.79 16 19 C -0.10 -1.03 4.48 -26.74 -0.12 -1.15 16 20 C -0.09 -0.71 5.34 -27.88 -0.15 -0.86 16 21 C -0.07 -0.62 5.13 -104.62 -0.54 -1.16 16 22 C -0.10 -0.92 9.70 -39.59 -0.38 -1.30 16 23 C -0.11 -0.96 9.83 -39.55 -0.39 -1.35 16 24 C -0.04 -0.39 6.32 -39.50 -0.25 -0.64 16 25 Cl -0.08 -0.68 28.96 -51.86 -1.50 -2.18 16 26 C -0.11 -0.94 9.83 -39.55 -0.39 -1.33 16 27 C -0.10 -0.89 9.70 -39.59 -0.38 -1.27 16 28 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 29 H 0.39 10.12 7.80 -40.82 -0.32 9.80 16 30 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.36 4.67 9.12 45.56 0.42 5.08 16 33 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.07 1.50 7.39 -51.93 -0.38 1.12 16 35 H 0.41 6.69 8.14 -40.82 -0.33 6.36 16 36 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 37 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.07 0.89 8.10 -51.93 -0.42 0.47 16 39 H 0.07 0.82 8.10 -51.92 -0.42 0.40 16 40 H 0.08 0.54 8.08 -51.93 -0.42 0.12 16 41 H 0.08 0.60 8.08 -51.93 -0.42 0.18 16 42 H 0.13 0.99 8.06 -52.48 -0.42 0.57 16 43 H 0.13 0.97 8.06 -52.48 -0.42 0.55 16 44 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 45 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 LS Contribution 397.50 15.07 5.99 5.99 Total: -1.00 -32.19 397.50 -9.85 -42.04 By element: Atomic # 1 Polarization: 23.53 SS G_CDS: -6.07 Total: 17.46 kcal Atomic # 6 Polarization: -0.36 SS G_CDS: -3.05 Total: -3.41 kcal Atomic # 7 Polarization: -55.25 SS G_CDS: 0.16 Total: -55.09 kcal Atomic # 8 Polarization: -20.79 SS G_CDS: -0.36 Total: -21.14 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -1.50 Total: -2.18 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -32.19 -9.85 -42.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283769475.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.740 kcal (2) G-P(sol) polarization free energy of solvation -32.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds