Wall clock time and date at job start Tue Mar 31 2020 23:42:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47179 * 72.16067 * 3 2 1 5 5 C 1.36811 * 119.99733 * 264.73490 * 4 3 2 6 6 H 1.07996 * 120.00010 * 125.98431 * 5 4 3 7 7 C 1.39065 * 119.99640 * 305.98274 * 5 4 3 8 8 N 1.31356 * 120.00181 * 4.31557 * 7 5 4 9 9 Si 1.86803 * 119.99797 * 184.31494 * 7 5 4 10 10 H 1.48500 * 109.46910 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47038 * 119.99627 * 9 7 5 12 12 H 1.48492 * 109.47361 * 240.00310 * 9 7 5 13 13 C 1.34775 * 120.00513 * 84.73452 * 4 3 2 14 14 O 1.21706 * 119.99573 * 3.38690 * 13 4 3 15 15 C 1.46892 * 120.00193 * 183.39095 * 13 4 3 16 16 N 1.38151 * 125.44526 * 352.87199 * 15 13 4 17 17 H 0.97008 * 125.60461 * 359.93874 * 16 15 13 18 18 C 1.37526 * 108.78769 * 179.97438 * 16 15 13 19 19 C 1.39204 * 133.17048 * 179.97438 * 18 16 15 20 20 C 1.37700 * 119.81380 * 179.97438 * 19 18 16 21 21 C 1.38938 * 120.65151 * 0.02562 * 20 19 18 22 22 C 1.36440 * 120.61284 * 359.74806 * 21 20 19 23 23 C 1.40126 * 119.82902 * 0.48933 * 22 21 20 24 24 C 1.36016 * 125.43881 * 172.82776 * 15 13 4 25 25 C 1.50697 * 126.14195 * 0.03766 * 24 15 13 26 26 C 1.50700 * 109.47061 * 269.99939 * 25 24 15 27 27 O 1.20826 * 119.99774 * 359.97438 * 26 25 24 28 28 O 1.34228 * 120.00245 * 179.97438 * 26 25 24 29 29 C 1.45200 * 117.00400 * 179.97438 * 28 26 25 30 30 H 4.40638 * 5.51392 * 179.97438 * 4 1 2 31 31 H 1.08995 * 109.47750 * 312.15292 * 3 2 1 32 32 H 1.09005 * 109.46830 * 192.15634 * 3 2 1 33 33 H 0.96997 * 120.00001 * 179.97438 * 8 7 5 34 34 H 1.07995 * 120.09355 * 0.02930 * 19 18 16 35 35 H 1.07995 * 119.67534 * 179.97438 * 20 19 18 36 36 H 1.08004 * 119.69344 * 179.97438 * 21 20 19 37 37 H 1.08004 * 120.08914 * 180.02562 * 22 21 20 38 38 H 1.09004 * 109.47121 * 29.99636 * 25 24 15 39 39 H 1.09000 * 109.47079 * 149.99873 * 25 24 15 40 40 H 1.08997 * 109.46371 * 60.00788 * 29 28 26 41 41 H 1.09001 * 109.47083 * 180.02562 * 29 28 26 42 42 H 1.08994 * 109.47451 * 300.00618 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1345 -0.4223 -1.3148 5 6 3.4656 -1.7317 -1.5327 6 1 3.0206 -2.2714 -2.3555 7 6 4.3751 -2.3676 -0.6947 8 7 4.8518 -1.7385 0.3553 9 14 4.9190 -4.1165 -1.0622 10 1 4.2415 -4.5971 -2.2931 11 1 6.3899 -4.1454 -1.2639 12 1 4.5582 -4.9970 0.0778 13 6 3.2578 0.4785 -2.3097 14 8 3.0223 1.6538 -2.0990 15 6 3.6762 0.0417 -3.6483 16 7 4.1038 -1.2296 -3.9789 17 1 4.1774 -1.9780 -3.3660 18 6 4.4088 -1.2597 -5.3196 19 6 4.8758 -2.2597 -6.1679 20 6 5.0922 -1.9823 -7.4992 21 6 4.8496 -0.7118 -8.0066 22 6 4.3874 0.2835 -7.1959 23 6 4.1640 0.0278 -5.8364 24 6 3.7038 0.8243 -4.7604 25 6 3.3146 2.2783 -4.8340 26 6 1.8463 2.3896 -5.1544 27 8 1.1840 1.3908 -5.3078 28 8 1.2742 3.5984 -5.2694 29 6 -0.1438 3.6299 -5.5801 30 1 -1.0500 -0.0002 0.0000 31 1 3.0097 -0.6888 0.7618 32 1 3.0088 1.0055 0.2164 33 1 5.4859 -2.1822 0.9400 34 1 5.0669 -3.2505 -5.7833 35 1 5.4549 -2.7597 -8.1553 36 1 5.0251 -0.5112 -9.0532 37 1 4.2013 1.2679 -7.5993 38 1 3.5146 2.7569 -3.8753 39 1 3.8951 2.7707 -5.6141 40 1 -0.6991 3.1167 -4.7950 41 1 -0.4787 4.6651 -5.6451 42 1 -0.3181 3.1315 -6.5336 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001296846866.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:42:22 Heat of formation + Delta-G solvation = 6.880662 kcal Electronic energy + Delta-G solvation = -29800.098503 eV Core-core repulsion = 25713.077343 eV Total energy + Delta-G solvation = -4087.021160 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.19591 -39.83580 -38.63840 -36.34300 -36.03818 -35.42568 -32.84449 -32.70975 -31.53486 -30.05147 -29.14920 -28.03970 -26.82210 -26.53150 -25.00983 -22.88570 -21.56373 -21.22898 -19.95318 -19.00100 -18.31210 -17.44751 -17.20909 -16.77409 -16.30675 -16.10500 -15.79000 -15.49095 -14.94279 -14.75879 -14.43584 -14.02928 -13.80068 -13.74888 -13.47850 -13.08595 -13.06172 -12.68040 -12.53125 -12.41816 -12.12944 -11.83029 -11.76099 -11.74183 -11.56140 -11.22847 -11.13794 -11.08099 -10.69819 -10.51655 -10.49300 -10.06264 -9.85245 -9.59141 -9.29085 -9.19858 -8.90315 -7.88468 -7.70277 -7.18414 -6.79890 -4.75764 1.29135 2.05129 2.55749 2.73258 2.85634 2.93041 2.96287 3.23148 3.36138 3.62325 3.73888 3.75520 4.20872 4.31554 4.57627 4.62704 5.10069 5.24030 5.24904 5.26810 5.31743 5.33779 5.40558 5.44238 5.59108 5.72165 5.75271 5.84661 6.01660 6.10618 6.23664 6.27978 6.44626 6.52788 6.66761 6.73892 6.82208 6.83165 6.94752 6.98239 7.12020 7.18621 7.58002 7.62437 7.88171 8.19703 8.22599 8.35950 8.58260 9.04030 9.48641 10.21394 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.008621 B = 0.005877 C = 0.003795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3247.164050 B = 4763.496064 C = 7377.302424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.159 4.159 3 C 0.214 3.786 4 N -0.430 5.430 5 C -0.371 4.371 6 H 0.090 0.910 7 C 0.061 3.939 8 N -0.843 5.843 9 Si 0.907 3.093 10 H -0.262 1.262 11 H -0.270 1.270 12 H -0.269 1.269 13 C 0.548 3.452 14 O -0.575 6.575 15 C 0.104 3.896 16 N -0.549 5.549 17 H 0.434 0.566 18 C 0.089 3.911 19 C -0.124 4.124 20 C -0.109 4.109 21 C -0.154 4.154 22 C -0.071 4.071 23 C -0.094 4.094 24 C -0.129 4.129 25 C -0.039 4.039 26 C 0.467 3.533 27 O -0.500 6.500 28 O -0.364 6.364 29 C 0.037 3.963 30 H 0.208 0.792 31 H 0.127 0.873 32 H 0.085 0.915 33 H 0.280 0.720 34 H 0.117 0.883 35 H 0.119 0.881 36 H 0.115 0.885 37 H 0.114 0.886 38 H 0.133 0.867 39 H 0.103 0.897 40 H 0.060 0.940 41 H 0.096 0.904 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.742 2.668 -9.486 9.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.268 4.268 2 C -0.161 4.161 3 C 0.092 3.908 4 N -0.147 5.147 5 C -0.499 4.499 6 H 0.107 0.893 7 C -0.150 4.150 8 N -0.476 5.476 9 Si 0.731 3.269 10 H -0.186 1.186 11 H -0.194 1.194 12 H -0.194 1.194 13 C 0.337 3.663 14 O -0.458 6.458 15 C -0.010 4.010 16 N -0.161 5.161 17 H 0.287 0.713 18 C -0.023 4.023 19 C -0.144 4.144 20 C -0.129 4.129 21 C -0.173 4.173 22 C -0.090 4.090 23 C -0.099 4.099 24 C -0.138 4.138 25 C -0.077 4.077 26 C 0.310 3.690 27 O -0.386 6.386 28 O -0.282 6.282 29 C -0.057 4.057 30 H 0.225 0.775 31 H 0.145 0.855 32 H 0.103 0.897 33 H 0.091 0.909 34 H 0.135 0.865 35 H 0.137 0.863 36 H 0.133 0.867 37 H 0.132 0.868 38 H 0.151 0.849 39 H 0.121 0.879 40 H 0.078 0.922 41 H 0.114 0.886 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.931 2.759 -9.006 9.464 hybrid contribution -0.232 -1.525 0.229 1.560 sum -1.162 1.233 -8.777 8.939 Atomic orbital electron populations 1.24626 0.95677 1.04450 1.02061 1.24345 0.95506 0.97421 0.98799 1.18566 0.81404 1.01979 0.88826 1.43047 1.55578 1.07444 1.08677 1.19351 1.25481 0.87687 1.17418 0.89279 1.25745 0.94392 0.99936 0.94963 1.69687 1.27601 1.37960 1.12313 0.86177 0.79409 0.81543 0.79813 1.18605 1.19449 1.19412 1.17611 0.79946 0.85352 0.83411 1.90649 1.55605 1.16851 1.82724 1.20086 1.01908 0.84476 0.94575 1.43899 1.52936 1.12075 1.07219 0.71289 1.18555 1.02587 0.95844 0.85302 1.20037 1.03943 0.97378 0.93083 1.20680 1.01259 0.96818 0.94109 1.20444 1.04044 0.93535 0.99261 1.20237 0.98519 0.98859 0.91398 1.17953 1.05231 0.93072 0.93627 1.18456 1.09636 0.94228 0.91432 1.19695 0.87659 0.94229 1.06123 1.23906 0.91539 0.80823 0.72762 1.90650 1.64803 1.37719 1.45425 1.86499 1.25988 1.33663 1.82030 1.23150 0.78600 1.02936 1.01036 0.77546 0.85529 0.89748 0.90940 0.86521 0.86333 0.86683 0.86791 0.84941 0.87871 0.92152 0.88596 0.92350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -4.95 19.25 29.55 0.57 -4.38 16 2 C -0.16 -3.58 13.62 -37.12 -0.51 -4.09 16 3 C 0.21 5.00 5.34 -6.83 -0.04 4.96 16 4 N -0.43 -10.51 2.42 -119.36 -0.29 -10.79 16 5 C -0.37 -8.79 6.50 -15.02 -0.10 -8.89 16 6 H 0.09 2.09 6.10 -52.49 -0.32 1.77 16 7 C 0.06 1.39 5.34 -17.45 -0.09 1.29 16 8 N -0.84 -20.05 11.40 55.50 0.63 -19.42 16 9 Si 0.91 17.33 29.36 -169.99 -4.99 12.34 16 10 H -0.26 -4.84 7.11 56.52 0.40 -4.43 16 11 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 12 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 13 C 0.55 13.45 7.55 -12.76 -0.10 13.36 16 14 O -0.57 -14.52 14.20 5.18 0.07 -14.45 16 15 C 0.10 2.34 6.70 -82.31 -0.55 1.79 16 16 N -0.55 -11.52 5.43 -7.36 -0.04 -11.56 16 17 H 0.43 9.02 4.85 -40.82 -0.20 8.82 16 18 C 0.09 1.70 7.25 -83.95 -0.61 1.09 16 19 C -0.12 -1.99 10.08 -39.42 -0.40 -2.39 16 20 C -0.11 -1.51 10.02 -39.52 -0.40 -1.91 16 21 C -0.15 -2.12 9.97 -39.97 -0.40 -2.52 16 22 C -0.07 -1.12 10.06 -39.52 -0.40 -1.52 16 23 C -0.09 -1.77 6.11 -106.93 -0.65 -2.43 16 24 C -0.13 -2.61 4.67 -104.16 -0.49 -3.10 16 25 C -0.04 -0.70 5.77 -29.04 -0.17 -0.87 16 26 C 0.47 8.80 7.95 36.01 0.29 9.09 16 27 O -0.50 -10.94 15.78 -18.75 -0.30 -11.24 16 28 O -0.36 -5.92 10.56 -39.25 -0.41 -6.33 16 29 C 0.04 0.47 10.56 101.05 1.07 1.54 16 30 H 0.21 3.17 7.80 -54.09 -0.42 2.74 16 31 H 0.13 3.01 6.01 -51.93 -0.31 2.70 16 32 H 0.08 1.96 7.54 -51.93 -0.39 1.57 16 33 H 0.28 6.21 8.31 -40.82 -0.34 5.87 16 34 H 0.12 1.64 8.06 -52.49 -0.42 1.22 16 35 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 36 H 0.12 1.25 8.06 -52.48 -0.42 0.83 16 37 H 0.11 1.53 8.06 -52.48 -0.42 1.11 16 38 H 0.13 2.48 6.19 -51.93 -0.32 2.16 16 39 H 0.10 1.44 8.14 -51.93 -0.42 1.02 16 40 H 0.06 0.82 8.13 -51.93 -0.42 0.40 16 41 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.06 0.70 8.13 -51.93 -0.42 0.28 16 LS Contribution 368.79 15.07 5.56 5.56 Total: -1.00 -29.81 368.79 -7.21 -37.02 By element: Atomic # 1 Polarization: 22.34 SS G_CDS: -4.48 Total: 17.86 kcal Atomic # 6 Polarization: 3.98 SS G_CDS: -2.96 Total: 1.01 kcal Atomic # 7 Polarization: -42.07 SS G_CDS: 0.30 Total: -41.77 kcal Atomic # 8 Polarization: -31.38 SS G_CDS: -0.64 Total: -32.02 kcal Atomic # 14 Polarization: 17.33 SS G_CDS: -4.99 Total: 12.34 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -29.81 -7.21 -37.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001296846866.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.899 kcal (2) G-P(sol) polarization free energy of solvation -29.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.018 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds