Wall clock time and date at job start Tue Mar 31 2020 23:42:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47179 * 72.16067 * 3 2 1 5 5 C 1.36811 * 119.99733 * 264.73490 * 4 3 2 6 6 H 1.07996 * 120.00010 * 125.98431 * 5 4 3 7 7 C 1.39065 * 119.99640 * 305.98274 * 5 4 3 8 8 N 1.31356 * 120.00181 * 4.31557 * 7 5 4 9 9 Si 1.86803 * 119.99797 * 184.31494 * 7 5 4 10 10 H 1.48500 * 109.46910 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47038 * 119.99627 * 9 7 5 12 12 H 1.48492 * 109.47361 * 240.00310 * 9 7 5 13 13 C 1.34775 * 120.00513 * 84.73452 * 4 3 2 14 14 O 1.21706 * 119.99573 * 3.38690 * 13 4 3 15 15 C 1.46892 * 120.00193 * 183.39095 * 13 4 3 16 16 N 1.38151 * 125.44526 * 352.87199 * 15 13 4 17 17 H 0.97008 * 125.60461 * 359.93874 * 16 15 13 18 18 C 1.37526 * 108.78769 * 179.97438 * 16 15 13 19 19 C 1.39204 * 133.17048 * 179.97438 * 18 16 15 20 20 C 1.37700 * 119.81380 * 179.97438 * 19 18 16 21 21 C 1.38938 * 120.65151 * 0.02562 * 20 19 18 22 22 C 1.36440 * 120.61284 * 359.74806 * 21 20 19 23 23 C 1.40126 * 119.82902 * 0.48933 * 22 21 20 24 24 C 1.36016 * 125.43881 * 172.82776 * 15 13 4 25 25 C 1.50697 * 126.14195 * 0.03766 * 24 15 13 26 26 C 1.50700 * 109.47061 * 269.99939 * 25 24 15 27 27 O 1.20826 * 119.99774 * 359.97438 * 26 25 24 28 28 O 1.34228 * 120.00245 * 179.97438 * 26 25 24 29 29 C 1.45200 * 117.00400 * 179.97438 * 28 26 25 30 30 H 4.40638 * 5.51392 * 179.97438 * 4 1 2 31 31 H 1.08995 * 109.47750 * 312.15292 * 3 2 1 32 32 H 1.09005 * 109.46830 * 192.15634 * 3 2 1 33 33 H 0.96997 * 120.00001 * 179.97438 * 8 7 5 34 34 H 1.07995 * 120.09355 * 0.02930 * 19 18 16 35 35 H 1.07995 * 119.67534 * 179.97438 * 20 19 18 36 36 H 1.08004 * 119.69344 * 179.97438 * 21 20 19 37 37 H 1.08004 * 120.08914 * 180.02562 * 22 21 20 38 38 H 1.09004 * 109.47121 * 29.99636 * 25 24 15 39 39 H 1.09000 * 109.47079 * 149.99873 * 25 24 15 40 40 H 1.08997 * 109.46371 * 60.00788 * 29 28 26 41 41 H 1.09001 * 109.47083 * 180.02562 * 29 28 26 42 42 H 1.08994 * 109.47451 * 300.00618 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1345 -0.4223 -1.3148 5 6 3.4656 -1.7317 -1.5327 6 1 3.0206 -2.2714 -2.3555 7 6 4.3751 -2.3676 -0.6947 8 7 4.8518 -1.7385 0.3553 9 14 4.9190 -4.1165 -1.0622 10 1 4.2415 -4.5971 -2.2931 11 1 6.3899 -4.1454 -1.2639 12 1 4.5582 -4.9970 0.0778 13 6 3.2578 0.4785 -2.3097 14 8 3.0223 1.6538 -2.0990 15 6 3.6762 0.0417 -3.6483 16 7 4.1038 -1.2296 -3.9789 17 1 4.1774 -1.9780 -3.3660 18 6 4.4088 -1.2597 -5.3196 19 6 4.8758 -2.2597 -6.1679 20 6 5.0922 -1.9823 -7.4992 21 6 4.8496 -0.7118 -8.0066 22 6 4.3874 0.2835 -7.1959 23 6 4.1640 0.0278 -5.8364 24 6 3.7038 0.8243 -4.7604 25 6 3.3146 2.2783 -4.8340 26 6 1.8463 2.3896 -5.1544 27 8 1.1840 1.3908 -5.3078 28 8 1.2742 3.5984 -5.2694 29 6 -0.1438 3.6299 -5.5801 30 1 -1.0500 -0.0002 0.0000 31 1 3.0097 -0.6888 0.7618 32 1 3.0088 1.0055 0.2164 33 1 5.4859 -2.1822 0.9400 34 1 5.0669 -3.2505 -5.7833 35 1 5.4549 -2.7597 -8.1553 36 1 5.0251 -0.5112 -9.0532 37 1 4.2013 1.2679 -7.5993 38 1 3.5146 2.7569 -3.8753 39 1 3.8951 2.7707 -5.6141 40 1 -0.6991 3.1167 -4.7950 41 1 -0.4787 4.6651 -5.6451 42 1 -0.3181 3.1315 -6.5336 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001296846866.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:42:21 Heat of formation + Delta-G solvation = -8.694112 kcal Electronic energy + Delta-G solvation = -29800.773876 eV Core-core repulsion = 25713.077343 eV Total energy + Delta-G solvation = -4087.696533 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.63863 -41.25187 -40.34509 -37.67346 -37.44645 -37.19227 -34.48459 -34.25038 -33.28133 -31.31122 -30.55243 -29.35210 -28.49682 -27.87867 -26.67663 -24.33990 -22.90769 -22.58072 -21.55515 -20.56754 -19.89446 -19.05011 -18.63032 -18.22243 -17.75469 -17.52112 -17.26810 -17.03897 -16.49903 -16.34767 -16.07065 -15.47976 -15.26077 -15.09544 -14.70954 -14.51575 -14.37120 -14.26888 -14.14515 -13.91398 -13.71958 -13.50840 -13.29178 -13.04155 -12.90788 -12.79104 -12.43347 -12.37618 -12.19498 -11.77723 -11.72620 -11.58048 -11.54359 -11.31966 -10.95541 -10.69979 -10.61095 -9.69603 -9.05955 -8.61373 -8.51372 -6.57853 -0.08327 0.81537 1.11481 1.26725 1.33726 1.34563 1.46171 1.66102 1.90270 1.92048 2.14035 2.26552 2.52120 2.83855 2.94794 3.07143 3.64351 3.76996 3.95159 3.97969 4.12576 4.19219 4.31032 4.32160 4.33681 4.45261 4.59336 4.63168 4.67486 4.67763 4.78620 4.94112 4.97526 5.02059 5.07736 5.14863 5.23543 5.38109 5.62916 5.74059 5.79549 5.83469 5.83749 6.09197 6.29419 6.68098 6.69707 6.79894 6.81036 7.23156 7.68376 8.48107 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.008621 B = 0.005877 C = 0.003795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3247.164050 B = 4763.496064 C = 7377.302424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.223 4.223 3 C 0.219 3.781 4 N -0.440 5.440 5 C -0.383 4.383 6 H 0.087 0.913 7 C 0.026 3.974 8 N -0.873 5.873 9 Si 0.970 3.030 10 H -0.251 1.251 11 H -0.266 1.266 12 H -0.267 1.267 13 C 0.535 3.465 14 O -0.600 6.600 15 C 0.053 3.947 16 N -0.559 5.559 17 H 0.430 0.570 18 C 0.071 3.929 19 C -0.144 4.144 20 C -0.090 4.090 21 C -0.145 4.145 22 C -0.077 4.077 23 C -0.121 4.121 24 C -0.119 4.119 25 C -0.041 4.041 26 C 0.471 3.529 27 O -0.537 6.537 28 O -0.363 6.363 29 C 0.029 3.971 30 H 0.254 0.746 31 H 0.115 0.885 32 H 0.069 0.931 33 H 0.284 0.716 34 H 0.132 0.868 35 H 0.159 0.841 36 H 0.156 0.844 37 H 0.137 0.863 38 H 0.118 0.882 39 H 0.144 0.856 40 H 0.046 0.954 41 H 0.138 0.862 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.775 1.887 -12.864 13.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.224 4.224 3 C 0.097 3.903 4 N -0.157 5.157 5 C -0.511 4.511 6 H 0.105 0.895 7 C -0.182 4.182 8 N -0.507 5.507 9 Si 0.790 3.210 10 H -0.174 1.174 11 H -0.190 1.190 12 H -0.192 1.192 13 C 0.325 3.675 14 O -0.486 6.486 15 C -0.060 4.060 16 N -0.170 5.170 17 H 0.281 0.719 18 C -0.040 4.040 19 C -0.164 4.164 20 C -0.109 4.109 21 C -0.164 4.164 22 C -0.096 4.096 23 C -0.125 4.125 24 C -0.129 4.129 25 C -0.079 4.079 26 C 0.315 3.685 27 O -0.427 6.427 28 O -0.280 6.280 29 C -0.064 4.064 30 H 0.270 0.730 31 H 0.133 0.867 32 H 0.088 0.912 33 H 0.094 0.906 34 H 0.150 0.850 35 H 0.177 0.823 36 H 0.173 0.827 37 H 0.155 0.845 38 H 0.136 0.864 39 H 0.161 0.839 40 H 0.065 0.935 41 H 0.156 0.844 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.970 2.004 -12.387 12.586 hybrid contribution -0.283 -1.216 1.110 1.671 sum -1.253 0.788 -11.277 11.374 Atomic orbital electron populations 1.25639 0.96537 1.01337 0.99122 1.24473 0.96090 1.00280 1.01568 1.18320 0.82693 1.00710 0.88555 1.43252 1.55707 1.07873 1.08859 1.19506 1.26209 0.87538 1.17816 0.89544 1.26500 0.93866 1.03540 0.94335 1.69784 1.28118 1.39654 1.13102 0.85236 0.79010 0.76769 0.79965 1.17427 1.19024 1.19172 1.18047 0.79740 0.85226 0.84469 1.90588 1.56938 1.17567 1.83474 1.19947 1.05757 0.86030 0.94247 1.43695 1.53843 1.11371 1.08131 0.71877 1.19061 1.03060 0.97182 0.84671 1.20403 1.04619 0.97562 0.93862 1.21237 0.98354 0.97906 0.93417 1.20965 1.01766 0.92767 1.00920 1.20604 0.98187 1.00742 0.90071 1.18227 1.06615 0.92818 0.94874 1.18837 1.07660 0.95009 0.91348 1.19786 0.88008 0.93338 1.06725 1.24003 0.91699 0.80987 0.71794 1.90628 1.65638 1.38991 1.47401 1.86484 1.27925 1.32079 1.81486 1.23510 0.76426 1.05630 1.00850 0.73007 0.86695 0.91246 0.90593 0.84994 0.82314 0.82661 0.84535 0.86402 0.83865 0.93467 0.84441 0.91572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -8.18 19.25 74.32 1.43 -6.75 16 2 C -0.22 -10.44 13.62 31.12 0.42 -10.01 16 3 C 0.22 11.03 5.34 84.57 0.45 11.48 16 4 N -0.44 -22.96 2.42 -649.75 -1.57 -24.53 16 5 C -0.38 -19.10 6.50 84.12 0.55 -18.56 16 6 H 0.09 4.27 6.10 -2.91 -0.02 4.25 16 7 C 0.03 1.21 5.34 84.96 0.45 1.67 16 8 N -0.87 -43.52 11.40 21.68 0.25 -43.27 16 9 Si 0.97 36.05 29.36 68.60 2.01 38.06 16 10 H -0.25 -8.78 7.11 99.48 0.71 -8.07 16 11 H -0.27 -9.64 7.11 99.48 0.71 -8.93 16 12 H -0.27 -9.77 7.11 99.48 0.71 -9.06 16 13 C 0.53 28.10 7.55 86.51 0.65 28.76 16 14 O -0.60 -32.52 14.20 -4.37 -0.06 -32.58 16 15 C 0.05 2.52 6.70 39.90 0.27 2.79 16 16 N -0.56 -24.37 5.43 -177.19 -0.96 -25.33 16 17 H 0.43 18.68 4.85 -92.70 -0.45 18.23 16 18 C 0.07 2.71 7.25 39.13 0.28 3.00 16 19 C -0.14 -4.31 10.08 22.37 0.23 -4.08 16 20 C -0.09 -2.10 10.02 22.31 0.22 -1.87 16 21 C -0.15 -3.34 9.97 22.02 0.22 -3.12 16 22 C -0.08 -2.21 10.06 22.31 0.22 -1.98 16 23 C -0.12 -4.49 6.11 -21.36 -0.13 -4.62 16 24 C -0.12 -4.95 4.67 -19.57 -0.09 -5.04 16 25 C -0.04 -1.48 5.77 29.10 0.17 -1.31 16 26 C 0.47 17.86 7.95 71.24 0.57 18.42 16 27 O -0.54 -23.97 15.78 21.96 0.35 -23.62 16 28 O -0.36 -11.52 10.56 -51.40 -0.54 -12.07 16 29 C 0.03 0.70 10.56 113.37 1.20 1.90 16 30 H 0.25 7.01 7.80 -4.42 -0.03 6.97 16 31 H 0.12 5.91 6.01 -2.39 -0.01 5.90 16 32 H 0.07 3.55 7.54 -2.38 -0.02 3.54 16 33 H 0.28 13.08 8.31 -92.71 -0.77 12.31 16 34 H 0.13 3.43 8.06 -2.91 -0.02 3.41 16 35 H 0.16 2.45 8.06 -2.91 -0.02 2.43 16 36 H 0.16 2.37 8.06 -2.91 -0.02 2.35 16 37 H 0.14 3.18 8.06 -2.91 -0.02 3.15 16 38 H 0.12 4.64 6.19 -2.38 -0.01 4.63 16 39 H 0.14 3.82 8.14 -2.39 -0.02 3.80 16 40 H 0.05 1.27 8.13 -2.39 -0.02 1.25 16 41 H 0.14 2.13 8.14 -2.39 -0.02 2.11 16 42 H 0.07 1.50 8.13 -2.39 -0.02 1.48 16 Total: -1.00 -70.16 368.79 7.21 -62.95 By element: Atomic # 1 Polarization: 49.11 SS G_CDS: 0.63 Total: 49.74 kcal Atomic # 6 Polarization: 3.53 SS G_CDS: 7.11 Total: 10.65 kcal Atomic # 7 Polarization: -90.84 SS G_CDS: -2.29 Total: -93.13 kcal Atomic # 8 Polarization: -68.01 SS G_CDS: -0.26 Total: -68.27 kcal Atomic # 14 Polarization: 36.05 SS G_CDS: 2.01 Total: 38.06 kcal Total: -70.16 7.21 -62.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001296846866.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.257 kcal (2) G-P(sol) polarization free energy of solvation -70.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds