Wall clock time and date at job start Tue Mar 31 2020 22:59:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 110.00074 * 2 1 4 4 C 1.54313 * 109.99202 * 238.96751 * 2 1 3 5 5 C 1.55153 * 102.86400 * 263.05203 * 4 2 1 6 6 H 1.09002 * 111.00861 * 82.37232 * 5 4 2 7 7 N 1.46903 * 111.03456 * 206.21262 * 5 4 2 8 8 C 1.46901 * 110.99749 * 198.66503 * 7 5 4 9 9 C 1.53008 * 109.47074 * 179.97438 * 8 7 5 10 10 C 1.52998 * 109.47360 * 179.97438 * 9 8 7 11 11 F 1.39907 * 109.46663 * 60.00006 * 10 9 8 12 12 F 1.39901 * 109.47094 * 179.97438 * 10 9 8 13 13 F 1.39896 * 109.47184 * 300.00278 * 10 9 8 14 14 C 1.54908 * 101.58128 * 324.29925 * 5 4 2 15 15 N 1.47029 * 109.88140 * 121.09164 * 2 1 3 16 16 C 1.34770 * 125.64652 * 300.51405 * 15 2 1 17 17 O 1.21284 * 120.00294 * 359.71752 * 16 15 2 18 18 C 1.50705 * 120.00005 * 179.71810 * 16 15 2 19 19 S 1.81004 * 109.47234 * 180.02562 * 18 16 15 20 20 C 1.76194 * 99.99738 * 179.97438 * 19 18 16 21 21 H 1.08001 * 120.00441 * 0.02562 * 20 19 18 22 22 C 1.38798 * 120.00052 * 179.97438 * 20 19 18 23 23 N 1.31634 * 119.99969 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00388 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47228 * 179.97438 * 24 22 20 26 26 H 1.48501 * 109.46793 * 299.99994 * 24 22 20 27 27 H 1.48500 * 109.47000 * 60.00087 * 24 22 20 28 28 H 1.08990 * 109.47417 * 300.35946 * 1 2 3 29 29 H 1.09002 * 109.46621 * 60.36414 * 1 2 3 30 30 H 1.09001 * 109.46751 * 180.35630 * 1 2 3 31 31 H 1.09002 * 110.92501 * 144.62687 * 4 2 1 32 32 H 1.09010 * 110.73999 * 21.37706 * 4 2 1 33 33 H 1.00899 * 110.99958 * 322.62000 * 7 5 4 34 34 H 1.08992 * 109.47381 * 299.99949 * 8 7 5 35 35 H 1.08996 * 109.47049 * 60.00429 * 8 7 5 36 36 H 1.09002 * 109.47048 * 300.00309 * 9 8 7 37 37 H 1.09003 * 109.46911 * 59.99694 * 9 8 7 38 38 H 1.09007 * 110.36495 * 278.17695 * 14 5 4 39 39 H 1.09001 * 110.46226 * 155.90389 * 14 5 4 40 40 H 1.09000 * 109.47145 * 60.00045 * 18 16 15 41 41 H 1.09001 * 109.46839 * 299.99770 * 18 16 15 42 42 H 0.97005 * 119.99723 * 0.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0576 -0.7476 -1.2426 5 6 2.3476 -2.1693 -0.6931 6 1 1.4383 -2.7695 -0.6626 7 7 3.3901 -2.8375 -1.4835 8 6 3.3616 -4.2908 -1.2707 9 6 4.4585 -4.9506 -2.1089 10 6 4.4294 -6.4641 -1.8867 11 9 3.1820 -6.9678 -2.2711 12 9 5.4319 -7.0673 -2.6536 13 9 4.6470 -6.7409 -0.5328 14 6 2.8523 -1.8530 0.7369 15 7 2.0300 -0.7140 1.1840 16 6 1.7742 -0.3851 2.4657 17 8 1.0807 0.5774 2.7180 18 6 2.3498 -1.2134 3.5855 19 16 1.8293 -0.5231 5.1757 20 6 2.6201 -1.6523 6.2729 21 1 3.2099 -2.4661 5.8775 22 6 2.4859 -1.4955 7.6455 23 7 1.7682 -0.5028 8.1274 24 14 3.3248 -2.6923 8.8088 25 1 3.0283 -2.3085 10.2123 26 1 2.8212 -4.0658 8.5537 27 1 4.7924 -2.6535 8.5852 28 1 -0.3634 0.5193 0.8866 29 1 -0.3632 0.5082 -0.8933 30 1 -0.3633 -1.0277 0.0064 31 1 2.9708 -0.2848 -1.6167 32 1 1.2975 -0.7835 -2.0231 33 1 3.3002 -2.6138 -2.4633 34 1 3.5305 -4.5068 -0.2158 35 1 2.3900 -4.6830 -1.5709 36 1 4.2892 -4.7344 -3.1638 37 1 5.4303 -4.5583 -1.8091 38 1 3.9059 -1.5744 0.7144 39 1 2.7013 -2.7105 1.3926 40 1 3.4380 -1.2026 3.5230 41 1 1.9910 -2.2391 3.5002 42 1 1.3328 0.1188 7.5233 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331957044.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:59:10 Heat of formation + Delta-G solvation = -223.393354 kcal Electronic energy + Delta-G solvation = -27201.646972 eV Core-core repulsion = 22698.227592 eV Total energy + Delta-G solvation = -4503.419380 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.117 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -51.07155 -48.58229 -48.56612 -41.37194 -39.10709 -36.89537 -34.76777 -33.59217 -33.07063 -30.48162 -29.79051 -27.11763 -26.92109 -25.83840 -23.54072 -22.83678 -21.72157 -20.67197 -20.02033 -19.51989 -19.36513 -18.46702 -18.02280 -17.46191 -16.96282 -16.64108 -16.37204 -15.92437 -15.71699 -15.60899 -15.42434 -15.02509 -14.96498 -14.82285 -14.75066 -14.71623 -14.65058 -14.55303 -14.38492 -14.13285 -13.88103 -13.74750 -13.38477 -13.09720 -12.91268 -12.74876 -12.69461 -12.48648 -12.11321 -11.96016 -11.94223 -11.63850 -11.56754 -11.11315 -10.98992 -10.35746 -9.81491 -9.56544 -8.94594 -8.90287 -6.30164 1.12269 1.45757 1.50486 1.59709 1.77976 1.80292 1.96889 2.32251 2.69153 3.00500 3.01663 3.06122 3.12443 3.27465 3.42595 3.52867 3.78433 3.93981 3.98115 4.02265 4.08303 4.19291 4.27459 4.34210 4.37865 4.45768 4.56848 4.64245 4.75436 4.79554 4.86508 4.89144 4.98541 5.05934 5.25220 5.44462 5.61696 5.83288 6.12898 6.29283 6.41115 7.02399 7.04590 8.48899 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.009266 B = 0.002793 C = 0.002203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3021.033272 B =10022.983471 C =12705.228552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.128 3.872 3 H 0.067 0.933 4 C -0.109 4.109 5 C 0.085 3.915 6 H 0.068 0.932 7 N -0.667 5.667 8 C 0.053 3.947 9 C -0.153 4.153 10 C 0.450 3.550 11 F -0.193 7.193 12 F -0.190 7.190 13 F -0.195 7.195 14 C 0.100 3.900 15 N -0.611 5.611 16 C 0.546 3.454 17 O -0.560 6.560 18 C -0.101 4.101 19 S -0.192 6.192 20 C -0.615 4.615 21 H 0.074 0.926 22 C -0.018 4.018 23 N -0.912 5.912 24 Si 1.136 2.864 25 H -0.279 1.279 26 H -0.263 1.263 27 H -0.263 1.263 28 H 0.032 0.968 29 H 0.092 0.908 30 H 0.058 0.942 31 H 0.102 0.898 32 H 0.111 0.889 33 H 0.365 0.635 34 H 0.074 0.926 35 H 0.051 0.949 36 H 0.134 0.866 37 H 0.128 0.872 38 H 0.086 0.914 39 H 0.070 0.930 40 H 0.105 0.895 41 H 0.104 0.896 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.885 -10.515 -30.390 32.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.025 3.975 3 H 0.085 0.915 4 C -0.147 4.147 5 C -0.025 4.025 6 H 0.086 0.914 7 N -0.301 5.301 8 C -0.077 4.077 9 C -0.191 4.191 10 C 0.395 3.605 11 F -0.174 7.174 12 F -0.172 7.172 13 F -0.176 7.176 14 C -0.023 4.023 15 N -0.346 5.346 16 C 0.334 3.666 17 O -0.438 6.438 18 C -0.253 4.253 19 S 0.035 5.965 20 C -0.762 4.762 21 H 0.092 0.908 22 C -0.221 4.221 23 N -0.547 5.547 24 Si 0.953 3.047 25 H -0.204 1.204 26 H -0.188 1.188 27 H -0.187 1.187 28 H 0.051 0.949 29 H 0.111 0.889 30 H 0.077 0.923 31 H 0.121 0.879 32 H 0.130 0.870 33 H 0.187 0.813 34 H 0.093 0.907 35 H 0.069 0.931 36 H 0.153 0.847 37 H 0.146 0.854 38 H 0.104 0.896 39 H 0.089 0.911 40 H 0.123 0.877 41 H 0.122 0.878 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 5.557 -9.333 -27.937 29.975 hybrid contribution -0.411 -1.091 -1.745 2.099 sum 5.146 -10.425 -29.682 31.878 Atomic orbital electron populations 1.22118 0.94829 1.02221 1.02584 1.21739 0.94758 0.96600 0.84365 0.91478 1.22829 1.03572 0.92995 0.95290 1.22476 0.92856 0.95284 0.91919 0.91436 1.60129 1.48752 1.06855 1.14392 1.21936 0.96948 0.88217 1.00590 1.22802 1.04974 0.85353 1.06013 1.20930 0.72907 0.93352 0.73290 1.93180 1.43258 1.89982 1.90993 1.93187 1.61844 1.86361 1.75799 1.93193 1.94553 1.95368 1.34533 1.22544 0.95696 0.87876 0.96175 1.48439 1.51159 1.31125 1.03873 1.19624 0.79923 0.84213 0.82843 1.90676 1.39714 1.29893 1.83547 1.23171 1.04535 1.02625 0.94934 1.85012 1.69598 1.43306 0.98567 1.24024 1.39455 1.17012 0.95717 0.90811 1.27851 0.95783 1.00137 0.98335 1.70922 1.30158 1.15005 1.38646 0.82729 0.75761 0.72952 0.73215 1.20394 1.18789 1.18743 0.94854 0.88879 0.92333 0.87947 0.87021 0.81339 0.90747 0.93115 0.84735 0.85376 0.89619 0.91108 0.87722 0.87793 0.92870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.48 9.07 71.98 0.65 -2.82 16 2 C 0.13 2.67 3.48 45.34 0.16 2.83 16 3 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 4 C -0.11 -1.11 5.97 31.78 0.19 -0.92 16 5 C 0.09 0.99 3.31 46.30 0.15 1.15 16 6 H 0.07 0.82 7.92 -2.39 -0.02 0.80 16 7 N -0.67 -4.79 6.38 -484.41 -3.09 -7.88 16 8 C 0.05 0.42 5.31 86.31 0.46 0.88 16 9 C -0.15 -0.84 5.52 30.60 0.17 -0.67 16 10 C 0.45 5.31 3.16 71.98 0.23 5.54 16 11 F -0.19 -2.69 16.80 44.97 0.76 -1.94 16 12 F -0.19 -2.61 17.32 44.97 0.78 -1.83 16 13 F -0.19 -3.20 16.80 44.97 0.76 -2.44 16 14 C 0.10 1.94 6.34 86.86 0.55 2.49 16 15 N -0.61 -16.59 3.08 -788.06 -2.43 -19.02 16 16 C 0.55 21.21 7.65 87.66 0.67 21.88 16 17 O -0.56 -26.49 14.77 -3.04 -0.04 -26.53 16 18 C -0.10 -4.24 5.16 71.24 0.37 -3.87 16 19 S -0.19 -10.81 19.60 -56.49 -1.11 -11.92 16 20 C -0.61 -36.10 9.50 67.95 0.65 -35.45 16 21 H 0.07 4.07 7.80 -2.91 -0.02 4.05 16 22 C -0.02 -1.05 5.49 84.86 0.47 -0.59 16 23 N -0.91 -58.64 13.67 21.65 0.30 -58.34 16 24 Si 1.14 49.84 29.92 68.60 2.05 51.89 16 25 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 26 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 27 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 28 H 0.03 1.02 6.75 -2.39 -0.02 1.00 16 29 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.11 0.61 7.84 -2.38 -0.02 0.59 16 33 H 0.37 0.84 8.53 -89.69 -0.77 0.08 16 34 H 0.07 0.87 7.80 -2.39 -0.02 0.85 16 35 H 0.05 0.40 7.75 -2.39 -0.02 0.38 16 36 H 0.13 0.08 8.14 -2.39 -0.02 0.06 16 37 H 0.13 0.58 8.14 -2.39 -0.02 0.56 16 38 H 0.09 1.62 8.14 -2.38 -0.02 1.60 16 39 H 0.07 1.44 7.47 -2.39 -0.02 1.42 16 40 H 0.10 4.07 8.14 -2.39 -0.02 4.05 16 41 H 0.10 4.02 7.85 -2.40 -0.02 4.00 16 42 H 0.26 17.41 7.12 -92.70 -0.66 16.75 16 Total: -1.00 -80.65 371.57 3.07 -77.58 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: 0.39 Total: 10.00 kcal Atomic # 6 Polarization: -14.27 SS G_CDS: 4.71 Total: -9.56 kcal Atomic # 7 Polarization: -80.02 SS G_CDS: -5.22 Total: -85.25 kcal Atomic # 8 Polarization: -26.49 SS G_CDS: -0.04 Total: -26.53 kcal Atomic # 9 Polarization: -8.50 SS G_CDS: 2.29 Total: -6.21 kcal Atomic # 14 Polarization: 49.84 SS G_CDS: 2.05 Total: 51.89 kcal Atomic # 16 Polarization: -10.81 SS G_CDS: -1.11 Total: -11.92 kcal Total: -80.65 3.07 -77.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331957044.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -145.813 kcal (2) G-P(sol) polarization free energy of solvation -80.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -226.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -223.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds