Wall clock time and date at job start Tue Mar 31 2020 22:59:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09005 * 110.32458 * 2 1 4 4 C 1.54909 * 110.36669 * 237.76560 * 2 1 3 5 5 C 1.55159 * 101.57997 * 204.15137 * 4 2 1 6 6 H 1.09001 * 110.72009 * 277.13942 * 5 4 2 7 7 N 1.46900 * 110.72261 * 153.86365 * 5 4 2 8 8 C 1.46896 * 111.00170 * 154.99692 * 7 5 4 9 9 C 1.52998 * 109.47339 * 180.02562 * 8 7 5 10 10 C 1.53001 * 109.47194 * 180.02562 * 9 8 7 11 11 F 1.39903 * 109.46997 * 60.00514 * 10 9 8 12 12 F 1.39901 * 109.46952 * 179.97438 * 10 9 8 13 13 F 1.39895 * 109.47363 * 300.00369 * 10 9 8 14 14 C 1.54322 * 102.94153 * 35.50063 * 5 4 2 15 15 N 1.47020 * 107.27184 * 337.80761 * 14 5 4 16 16 C 1.34783 * 125.64774 * 178.97629 * 15 14 5 17 17 O 1.21279 * 119.99624 * 179.97438 * 16 15 14 18 18 C 1.50700 * 120.00082 * 359.95955 * 16 15 14 19 19 S 1.81001 * 109.47125 * 179.97438 * 18 16 15 20 20 C 1.76199 * 99.99608 * 180.02562 * 19 18 16 21 21 H 1.07996 * 120.00661 * 359.97438 * 20 19 18 22 22 C 1.38801 * 119.99519 * 179.97438 * 20 19 18 23 23 N 1.31638 * 120.00099 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99903 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.46947 * 359.97438 * 24 22 20 26 26 H 1.48496 * 109.47300 * 120.00295 * 24 22 20 27 27 H 1.48504 * 109.46799 * 240.00175 * 24 22 20 28 28 H 1.09001 * 109.47002 * 182.23476 * 1 2 3 29 29 H 1.08993 * 109.46955 * 302.23913 * 1 2 3 30 30 H 1.09000 * 109.47050 * 62.23742 * 1 2 3 31 31 H 1.09002 * 111.00593 * 322.22214 * 4 2 1 32 32 H 1.08997 * 111.00803 * 86.03563 * 4 2 1 33 33 H 1.00899 * 110.99758 * 278.95651 * 7 5 4 34 34 H 1.09005 * 109.47453 * 300.00224 * 8 7 5 35 35 H 1.09003 * 109.46888 * 60.00100 * 8 7 5 36 36 H 1.09005 * 109.46988 * 300.00457 * 9 8 7 37 37 H 1.09003 * 109.47091 * 60.00173 * 9 8 7 38 38 H 1.09001 * 109.88349 * 97.22973 * 14 5 4 39 39 H 1.09008 * 109.88114 * 218.23667 * 14 5 4 40 40 H 1.08995 * 109.47007 * 300.00553 * 18 16 15 41 41 H 1.09004 * 109.46719 * 59.99830 * 18 16 15 42 42 H 0.97003 * 119.99637 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9087 1.0222 0.0000 4 6 2.0692 -0.7746 -1.2284 5 6 3.4778 -1.1989 -0.7354 6 1 4.1945 -0.3892 -0.8725 7 7 3.9263 -2.4147 -1.4273 8 6 5.3927 -2.4995 -1.4455 9 6 5.8208 -3.7754 -2.1733 10 6 7.3482 -3.8641 -2.1916 11 9 7.8294 -3.8927 -0.8782 12 9 7.7396 -5.0311 -2.8566 13 9 7.8721 -2.7500 -2.8561 14 6 3.2494 -1.4775 0.7652 15 7 2.0431 -0.7396 1.1675 16 6 1.4972 -0.7388 2.3998 17 8 0.4965 -0.0897 2.6192 18 6 2.1301 -1.5446 3.5049 19 16 1.1720 -1.3386 5.0266 20 6 2.1083 -2.3572 6.1178 21 1 2.9853 -2.8731 5.7558 22 6 1.7186 -2.4964 7.4426 23 7 0.6493 -1.8680 7.8838 24 14 2.7107 -3.5768 8.5993 25 1 3.8563 -4.1689 7.8631 26 1 3.2179 -2.7574 9.7291 27 1 1.8460 -4.6637 9.1251 28 1 -0.3633 -1.0269 0.0401 29 1 -0.3633 0.5482 0.8692 30 1 -0.3633 0.4787 -0.9094 31 1 1.4512 -1.6466 -1.4425 32 1 2.1392 -0.1244 -2.1004 33 1 3.5215 -3.2389 -1.0091 34 1 5.8006 -1.6317 -1.9639 35 1 5.7681 -2.5211 -0.4223 36 1 5.4130 -4.6435 -1.6552 37 1 5.4455 -3.7534 -3.1964 38 1 3.1015 -2.5455 0.9257 39 1 4.1077 -1.1317 1.3413 40 1 2.1448 -2.5976 3.2240 41 1 3.1505 -1.1980 3.6686 42 1 0.3768 -1.9657 8.8096 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331957057.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:59:18 Heat of formation + Delta-G solvation = -215.356529 kcal Electronic energy + Delta-G solvation = -27105.151155 eV Core-core repulsion = 22602.080278 eV Total energy + Delta-G solvation = -4503.070877 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.117 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -51.05743 -48.57048 -48.54652 -41.31760 -39.03806 -36.78776 -34.61109 -33.45223 -33.17927 -30.32259 -29.76835 -27.69189 -26.71923 -25.72701 -23.39248 -22.91333 -21.87855 -20.42887 -19.52186 -19.45186 -19.37431 -18.30472 -18.09517 -17.49121 -16.90820 -16.68194 -16.40526 -15.98913 -15.73905 -15.66531 -15.41358 -15.13246 -14.98464 -14.84470 -14.70592 -14.69302 -14.55799 -14.35256 -14.10852 -13.80035 -13.43978 -13.35227 -13.20251 -13.12256 -12.95885 -12.90433 -12.78319 -12.60361 -12.47609 -12.20612 -11.94942 -11.72908 -11.67485 -11.18096 -10.68266 -10.30732 -9.76281 -9.47044 -8.70157 -8.37298 -6.15779 1.22345 1.39707 1.43304 1.55135 1.57283 1.80918 2.06549 2.24862 2.71117 2.96941 3.03908 3.13977 3.20254 3.33939 3.52532 3.56788 3.92446 3.96064 4.03915 4.10598 4.13778 4.23626 4.28777 4.38536 4.44796 4.49029 4.62930 4.65656 4.76311 4.82695 4.87725 4.96904 5.07353 5.24713 5.29237 5.39069 5.58153 5.87459 6.17232 6.28012 6.41777 7.04016 7.15075 8.72208 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.009675 B = 0.002658 C = 0.002129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2893.254961 B =10533.025068 C =13146.953834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.126 3.874 3 H 0.079 0.921 4 C -0.100 4.100 5 C 0.090 3.910 6 H 0.110 0.890 7 N -0.665 5.665 8 C 0.052 3.948 9 C -0.157 4.157 10 C 0.452 3.548 11 F -0.194 7.194 12 F -0.192 7.192 13 F -0.190 7.190 14 C 0.066 3.934 15 N -0.612 5.612 16 C 0.546 3.454 17 O -0.555 6.555 18 C -0.121 4.121 19 S -0.147 6.147 20 C -0.546 4.546 21 H 0.081 0.919 22 C 0.014 3.986 23 N -0.911 5.911 24 Si 0.999 3.001 25 H -0.257 1.257 26 H -0.273 1.273 27 H -0.273 1.273 28 H 0.043 0.957 29 H 0.048 0.952 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.110 0.890 33 H 0.353 0.647 34 H 0.091 0.909 35 H 0.045 0.955 36 H 0.123 0.877 37 H 0.133 0.867 38 H 0.075 0.925 39 H 0.072 0.928 40 H 0.102 0.898 41 H 0.100 0.900 42 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.907 -3.468 -26.737 29.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.024 3.976 3 H 0.097 0.903 4 C -0.139 4.139 5 C -0.021 4.021 6 H 0.128 0.872 7 N -0.296 5.296 8 C -0.077 4.077 9 C -0.195 4.195 10 C 0.397 3.603 11 F -0.176 7.176 12 F -0.173 7.173 13 F -0.172 7.172 14 C -0.059 4.059 15 N -0.348 5.348 16 C 0.334 3.666 17 O -0.433 6.433 18 C -0.272 4.272 19 S 0.080 5.920 20 C -0.694 4.694 21 H 0.099 0.901 22 C -0.191 4.191 23 N -0.547 5.547 24 Si 0.821 3.179 25 H -0.181 1.181 26 H -0.199 1.199 27 H -0.198 1.198 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.106 0.894 31 H 0.101 0.899 32 H 0.128 0.872 33 H 0.173 0.827 34 H 0.109 0.891 35 H 0.063 0.937 36 H 0.142 0.858 37 H 0.151 0.849 38 H 0.093 0.907 39 H 0.091 0.909 40 H 0.120 0.880 41 H 0.119 0.881 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 11.299 -2.208 -26.859 29.222 hybrid contribution 1.838 -1.459 1.920 3.032 sum 13.137 -3.666 -24.939 28.425 Atomic orbital electron populations 1.22040 0.94748 1.01870 1.02847 1.22168 0.94884 0.96173 0.84414 0.90257 1.22814 0.94574 1.00680 0.95819 1.22575 0.97919 0.93922 0.87659 0.87232 1.60527 1.06825 1.04895 1.57343 1.21978 0.88877 0.97318 0.99557 1.22817 0.86027 1.02648 1.07986 1.20870 0.93579 0.72996 0.72846 1.93191 1.90698 1.96163 1.37547 1.93186 1.93021 1.49961 1.81146 1.93180 1.89303 1.53596 1.81094 1.23106 0.87029 0.97064 0.98669 1.48437 1.28817 1.49092 1.08407 1.19690 0.83417 0.81079 0.82448 1.90657 1.26402 1.44323 1.81901 1.23320 1.03662 1.03104 0.97139 1.85557 1.39459 1.64975 1.02032 1.23206 1.15096 1.33410 0.97645 0.90111 1.26133 0.96440 0.97347 0.99183 1.70190 1.25184 1.42290 1.17050 0.84904 0.78116 0.77534 0.77382 1.18081 1.19865 1.19807 0.93751 0.93329 0.89410 0.89910 0.87166 0.82653 0.89110 0.93669 0.85847 0.84922 0.90693 0.90938 0.88001 0.88135 0.91935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.87 8.59 71.98 0.62 -3.25 16 2 C 0.13 2.63 3.77 45.47 0.17 2.80 16 3 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 4 C -0.10 -1.24 6.19 31.99 0.20 -1.04 16 5 C 0.09 1.00 3.28 46.10 0.15 1.15 16 6 H 0.11 1.02 7.83 -2.39 -0.02 1.00 16 7 N -0.66 -5.37 6.38 -485.45 -3.10 -8.47 16 8 C 0.05 0.39 5.31 86.30 0.46 0.84 16 9 C -0.16 -0.92 5.52 30.59 0.17 -0.76 16 10 C 0.45 5.17 3.16 71.98 0.23 5.40 16 11 F -0.19 -2.93 16.80 44.97 0.76 -2.17 16 12 F -0.19 -2.65 17.32 44.97 0.78 -1.87 16 13 F -0.19 -2.57 16.80 44.97 0.76 -1.82 16 14 C 0.07 1.15 6.21 86.73 0.54 1.69 16 15 N -0.61 -16.09 3.24 -788.14 -2.56 -18.64 16 16 C 0.55 20.70 7.65 87.66 0.67 21.37 16 17 O -0.55 -25.71 13.58 -3.03 -0.04 -25.75 16 18 C -0.12 -4.93 5.35 71.24 0.38 -4.55 16 19 S -0.15 -8.25 20.57 -56.49 -1.16 -9.42 16 20 C -0.55 -31.29 9.50 67.95 0.65 -30.64 16 21 H 0.08 4.32 7.80 -2.91 -0.02 4.30 16 22 C 0.01 0.78 5.49 84.86 0.47 1.25 16 23 N -0.91 -56.01 13.22 21.65 0.29 -55.73 16 24 Si 1.00 43.57 29.55 68.60 2.03 45.60 16 25 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 26 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 27 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 28 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.05 1.60 6.09 -2.39 -0.01 1.59 16 30 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.08 1.08 8.06 -2.39 -0.02 1.06 16 32 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.35 2.58 8.04 -89.69 -0.72 1.86 16 34 H 0.09 0.68 7.74 -2.38 -0.02 0.66 16 35 H 0.04 0.40 7.80 -2.39 -0.02 0.38 16 36 H 0.12 0.44 8.14 -2.38 -0.02 0.42 16 37 H 0.13 0.49 8.14 -2.39 -0.02 0.47 16 38 H 0.07 1.23 7.49 -2.39 -0.02 1.21 16 39 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 40 H 0.10 3.79 8.14 -2.40 -0.02 3.77 16 41 H 0.10 3.77 8.14 -2.39 -0.02 3.76 16 42 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 Total: -1.00 -76.65 371.25 2.76 -73.89 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: 0.32 Total: 10.12 kcal Atomic # 6 Polarization: -10.44 SS G_CDS: 4.69 Total: -5.74 kcal Atomic # 7 Polarization: -77.47 SS G_CDS: -5.37 Total: -82.84 kcal Atomic # 8 Polarization: -25.71 SS G_CDS: -0.04 Total: -25.75 kcal Atomic # 9 Polarization: -8.15 SS G_CDS: 2.29 Total: -5.86 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Atomic # 16 Polarization: -8.25 SS G_CDS: -1.16 Total: -9.42 kcal Total: -76.65 2.76 -73.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331957057.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.465 kcal (2) G-P(sol) polarization free energy of solvation -76.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -218.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -215.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds