Wall clock time and date at job start Tue Mar 31 2020 23:55:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86803 * 120.00037 * 2 1 4 4 H 1.48498 * 109.47174 * 90.00086 * 3 2 1 5 5 H 1.48501 * 109.47062 * 210.00037 * 3 2 1 6 6 H 1.48490 * 109.46901 * 330.00013 * 3 2 1 7 7 C 1.38805 * 120.00034 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99860 * 359.97438 * 7 2 1 9 9 S 1.76189 * 120.00013 * 179.97438 * 7 2 1 10 10 C 1.81005 * 100.00097 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.47173 * 179.97438 * 10 9 7 12 12 O 1.21281 * 120.00120 * 0.02562 * 11 10 9 13 13 N 1.34774 * 119.99741 * 179.97438 * 11 10 9 14 14 C 1.47428 * 125.64994 * 0.02637 * 13 11 10 15 15 C 1.54910 * 104.83072 * 204.09263 * 14 13 11 16 16 H 1.09001 * 111.00638 * 81.06842 * 15 14 13 17 17 O 1.42908 * 111.00046 * 204.88006 * 15 14 13 18 18 C 1.55156 * 101.58230 * 322.99086 * 15 14 13 19 19 H 1.09000 * 110.72079 * 277.13942 * 18 15 14 20 20 N 1.46498 * 110.71954 * 154.04806 * 18 15 14 21 21 C 1.34774 * 120.00122 * 155.00196 * 20 18 15 22 22 O 1.21608 * 120.00139 * 359.97438 * 21 20 18 23 23 C 1.47102 * 120.00232 * 179.97438 * 21 20 18 24 24 C 1.32612 * 124.62456 * 179.69635 * 23 21 20 25 25 C 1.51112 * 110.75943 * 179.84578 * 24 23 21 26 26 C 1.54579 * 104.90280 * 343.80435 * 25 24 23 27 27 C 1.51120 * 124.61925 * 0.02562 * 23 21 20 28 28 C 1.47026 * 125.64860 * 179.71935 * 13 11 10 29 29 H 0.97001 * 119.99662 * 359.97438 * 1 2 3 30 30 H 1.09005 * 109.47161 * 300.00107 * 10 9 7 31 31 H 1.09002 * 109.46892 * 59.99887 * 10 9 7 32 32 H 1.09002 * 110.36521 * 322.92923 * 14 13 11 33 33 H 1.08995 * 110.36222 * 85.25412 * 14 13 11 34 34 H 0.96701 * 113.99813 * 298.54124 * 17 15 14 35 35 H 0.96999 * 120.00000 * 334.99914 * 20 18 15 36 36 H 1.07997 * 124.61621 * 0.02562 * 24 23 21 37 37 H 1.09004 * 110.51910 * 224.84961 * 25 24 23 38 38 H 1.09004 * 110.24727 * 102.62197 * 25 24 23 39 39 H 1.08999 * 110.98542 * 266.71189 * 26 25 24 40 40 H 1.08997 * 111.01573 * 142.92701 * 26 25 24 41 41 H 1.08999 * 110.36138 * 315.44119 * 27 23 21 42 42 H 1.08999 * 110.36511 * 77.64616 * 27 23 21 43 43 H 1.09000 * 109.87879 * 298.39498 * 28 13 11 44 44 H 1.09006 * 109.88194 * 59.55906 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6178 0.0000 4 1 2.4979 2.0464 1.4001 5 1 3.5479 1.4402 -0.7000 6 1 1.4478 2.6526 -0.7000 7 6 2.0104 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0014 9 16 3.7723 -1.2021 -0.0001 10 6 4.0866 -2.9846 0.0001 11 6 5.5731 -3.2326 -0.0010 12 8 6.3441 -2.2964 -0.0015 13 7 6.0457 -4.4947 -0.0005 14 6 5.2250 -5.7195 0.0006 15 6 6.1403 -6.8095 0.6121 16 1 6.1464 -6.7492 1.7004 17 8 5.7467 -8.1124 0.1763 18 6 7.5230 -6.4201 0.0257 19 1 7.6411 -6.8197 -0.9815 20 7 8.6051 -6.8864 0.8963 21 6 9.8304 -7.1161 0.3843 22 8 10.0377 -6.9369 -0.8005 23 6 10.9171 -7.5837 1.2586 24 6 12.1524 -7.8433 0.8521 25 6 13.0120 -8.2994 2.0082 26 6 12.2263 -7.8880 3.2743 27 6 10.7760 -7.8406 2.7411 28 6 7.4650 -4.8783 -0.0074 29 1 -0.4850 0.8401 0.0004 30 1 3.6440 -3.4315 0.8904 31 1 3.6433 -3.4318 -0.8896 32 1 4.3368 -5.5804 0.6169 33 1 4.9432 -5.9881 -1.0175 34 1 4.8491 -8.3599 0.4373 35 1 8.4396 -7.0297 1.8413 36 1 12.4978 -7.7397 -0.1659 37 1 13.9808 -7.8004 1.9842 38 1 13.1424 -9.3812 1.9775 39 1 12.5441 -6.9078 3.6296 40 1 12.3291 -8.6376 4.0589 41 1 10.2238 -7.0295 3.2157 42 1 10.2745 -8.7926 2.9151 43 1 7.9450 -4.5066 -0.9127 44 1 7.9632 -4.4715 0.8727 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001341338306.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:55:46 Heat of formation + Delta-G solvation = -128.099685 kcal Electronic energy + Delta-G solvation = -26506.683767 eV Core-core repulsion = 22549.253371 eV Total energy + Delta-G solvation = -3957.430396 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.69665 -40.79339 -39.30446 -38.50983 -36.64880 -35.53147 -34.67707 -32.21961 -30.62671 -29.99488 -29.47178 -28.69398 -27.84256 -24.99161 -23.36901 -22.32730 -21.60076 -20.94364 -20.03117 -19.59852 -18.68709 -18.38961 -18.10874 -17.22831 -17.10161 -16.94300 -16.74828 -16.48404 -15.97201 -15.71818 -15.52080 -15.24116 -15.03355 -14.88409 -14.23621 -14.06415 -13.90729 -13.72672 -13.58323 -13.47406 -13.37110 -13.19496 -13.02462 -12.96384 -12.69930 -12.60993 -12.07371 -12.00711 -11.93567 -11.88563 -11.51968 -11.17844 -11.13265 -11.02992 -10.55035 -10.41143 -9.91442 -9.87041 -9.02537 -8.52233 -6.23552 0.31993 0.91083 1.30335 1.38199 1.42417 1.49853 1.79547 2.09117 2.17352 2.24001 2.64200 2.86056 2.90371 3.16719 3.46036 3.56140 3.63414 3.69325 3.85878 4.03771 4.07548 4.14261 4.16417 4.21696 4.30370 4.36157 4.49233 4.58219 4.60976 4.76836 4.82418 4.82456 4.90214 4.97633 5.03661 5.18588 5.24879 5.35355 5.38996 5.52119 5.70312 6.10982 6.16153 6.40247 6.79585 6.92407 6.93695 7.08859 8.59751 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.021923 B = 0.002091 C = 0.001995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.884614 B =13388.479844 C =14029.603108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.047 3.953 3 Si 0.911 3.089 4 H -0.261 1.261 5 H -0.240 1.240 6 H -0.260 1.260 7 C -0.526 4.526 8 H 0.066 0.934 9 S -0.179 6.179 10 C -0.101 4.101 11 C 0.549 3.451 12 O -0.560 6.560 13 N -0.610 5.610 14 C 0.062 3.938 15 C 0.107 3.893 16 H 0.110 0.890 17 O -0.560 6.560 18 C 0.147 3.853 19 H 0.096 0.904 20 N -0.698 5.698 21 C 0.563 3.437 22 O -0.586 6.586 23 C -0.215 4.215 24 C -0.070 4.070 25 C -0.105 4.105 26 C -0.121 4.121 27 C -0.087 4.087 28 C 0.104 3.896 29 H 0.277 0.723 30 H 0.120 0.880 31 H 0.113 0.887 32 H 0.111 0.889 33 H 0.090 0.910 34 H 0.407 0.593 35 H 0.419 0.581 36 H 0.125 0.875 37 H 0.091 0.909 38 H 0.101 0.899 39 H 0.074 0.926 40 H 0.096 0.904 41 H 0.081 0.919 42 H 0.093 0.907 43 H 0.056 0.944 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.261 -24.071 9.062 33.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.159 4.159 3 Si 0.734 3.266 4 H -0.186 1.186 5 H -0.164 1.164 6 H -0.184 1.184 7 C -0.674 4.674 8 H 0.085 0.915 9 S 0.048 5.952 10 C -0.251 4.251 11 C 0.338 3.662 12 O -0.438 6.438 13 N -0.346 5.346 14 C -0.061 4.061 15 C 0.046 3.954 16 H 0.128 0.872 17 O -0.369 6.369 18 C 0.041 3.959 19 H 0.114 0.886 20 N -0.350 5.350 21 C 0.353 3.647 22 O -0.467 6.467 23 C -0.218 4.218 24 C -0.090 4.090 25 C -0.142 4.142 26 C -0.158 4.158 27 C -0.124 4.124 28 C -0.021 4.021 29 H 0.086 0.914 30 H 0.139 0.861 31 H 0.131 0.869 32 H 0.130 0.870 33 H 0.108 0.892 34 H 0.260 0.740 35 H 0.257 0.743 36 H 0.143 0.857 37 H 0.109 0.891 38 H 0.119 0.881 39 H 0.093 0.907 40 H 0.115 0.885 41 H 0.100 0.900 42 H 0.111 0.889 43 H 0.075 0.925 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 22.900 -22.428 8.006 33.038 hybrid contribution -1.788 -0.024 0.022 1.789 sum 21.112 -22.452 8.028 31.847 Atomic orbital electron populations 1.70007 1.07157 1.28990 1.49040 1.25518 0.95259 1.02110 0.92965 0.85907 0.80625 0.79865 0.80234 1.18588 1.16368 1.18392 1.22416 0.89876 0.96799 1.58268 0.91542 1.84823 1.06870 1.05929 1.97595 1.23204 0.94586 0.99746 1.07610 1.19794 0.89811 0.81335 0.75287 1.90708 1.59570 1.42915 1.50632 1.48105 1.07730 1.05032 1.73780 1.23385 0.95832 0.82925 1.03918 1.22985 0.90804 0.82636 0.98943 0.87235 1.86532 1.38817 1.30393 1.81135 1.21682 0.86744 0.90917 0.96603 0.88583 1.45573 1.08945 1.67380 1.13101 1.18554 0.83073 0.75993 0.87039 1.90795 1.83303 1.54338 1.18306 1.21880 0.94216 1.07769 0.97948 1.24371 0.94167 0.90141 1.00322 1.21559 0.98786 1.02608 0.91247 1.22466 0.93174 1.02947 0.97230 1.21305 0.99279 1.03125 0.88723 1.22273 0.82419 0.94900 1.02483 0.91358 0.86146 0.86878 0.87038 0.89220 0.74042 0.74257 0.85674 0.89067 0.88114 0.90724 0.88549 0.90003 0.88896 0.92532 0.90708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.87 13.97 21.65 0.30 -54.57 16 2 C 0.05 2.74 5.50 84.86 0.47 3.20 16 3 Si 0.91 44.77 27.74 68.60 1.90 46.67 16 4 H -0.26 -12.48 7.11 99.48 0.71 -11.77 16 5 H -0.24 -11.87 6.74 99.48 0.67 -11.20 16 6 H -0.26 -11.99 7.11 99.48 0.71 -11.28 16 7 C -0.53 -30.07 10.04 67.96 0.68 -29.39 16 8 H 0.07 3.96 8.03 -2.91 -0.02 3.94 16 9 S -0.18 -8.98 18.55 -56.49 -1.05 -10.03 16 10 C -0.10 -3.73 5.16 71.24 0.37 -3.36 16 11 C 0.55 19.56 7.87 87.66 0.69 20.25 16 12 O -0.56 -25.04 16.19 -3.03 -0.05 -25.09 16 13 N -0.61 -15.71 3.33 -811.76 -2.70 -18.41 16 14 C 0.06 1.00 6.42 86.85 0.56 1.56 16 15 C 0.11 1.32 4.06 31.99 0.13 1.45 16 16 H 0.11 0.84 8.01 -2.39 -0.02 0.82 16 17 O -0.56 -6.36 13.48 -148.98 -2.01 -8.37 16 18 C 0.15 2.80 3.04 46.18 0.14 2.94 16 19 H 0.10 2.31 7.55 -2.39 -0.02 2.29 16 20 N -0.70 -11.33 5.11 -440.52 -2.25 -13.58 16 21 C 0.56 12.22 7.79 86.57 0.67 12.90 16 22 O -0.59 -18.14 16.41 -4.06 -0.07 -18.21 16 23 C -0.22 -3.31 6.09 -18.56 -0.11 -3.42 16 24 C -0.07 -0.99 10.43 24.66 0.26 -0.73 16 25 C -0.11 -0.76 6.80 30.52 0.21 -0.55 16 26 C -0.12 -0.70 7.17 31.67 0.23 -0.47 16 27 C -0.09 -0.70 6.02 30.52 0.18 -0.51 16 28 C 0.10 2.55 6.63 86.73 0.58 3.13 16 29 H 0.28 15.40 8.31 -92.71 -0.77 14.63 16 30 H 0.12 3.90 7.85 -2.39 -0.02 3.88 16 31 H 0.11 3.87 8.14 -2.39 -0.02 3.85 16 32 H 0.11 1.40 7.48 -2.39 -0.02 1.38 16 33 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.41 0.89 9.11 -74.06 -0.67 0.21 16 35 H 0.42 4.03 7.57 -92.71 -0.70 3.33 16 36 H 0.13 2.03 8.03 -2.91 -0.02 2.01 16 37 H 0.09 0.51 8.14 -2.38 -0.02 0.49 16 38 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 39 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 40 H 0.10 0.24 8.14 -2.39 -0.02 0.22 16 41 H 0.08 0.52 7.83 -2.39 -0.02 0.50 16 42 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 43 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 44 H 0.07 1.86 8.03 -2.38 -0.02 1.84 16 Total: -1.00 -83.77 381.68 -1.25 -85.02 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -0.38 Total: 9.58 kcal Atomic # 6 Polarization: 1.94 SS G_CDS: 5.05 Total: 6.98 kcal Atomic # 7 Polarization: -81.92 SS G_CDS: -4.65 Total: -86.57 kcal Atomic # 8 Polarization: -49.54 SS G_CDS: -2.12 Total: -51.66 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 1.90 Total: 46.67 kcal Atomic # 16 Polarization: -8.98 SS G_CDS: -1.05 Total: -10.03 kcal Total: -83.77 -1.25 -85.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341338306.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.083 kcal (2) G-P(sol) polarization free energy of solvation -83.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds