Wall clock time and date at job start Tue Mar 31 2020 23:06:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47397 * 2 1 4 4 C 1.53000 * 109.47212 * 240.00139 * 2 1 3 5 5 S 1.81398 * 109.47160 * 64.99816 * 4 2 1 6 6 C 1.81407 * 103.00187 * 180.02562 * 5 4 2 7 7 F 1.39896 * 109.46945 * 60.00114 * 6 5 4 8 8 F 1.39895 * 109.47092 * 180.02562 * 6 5 4 9 9 F 1.39898 * 109.46622 * 300.00009 * 6 5 4 10 10 C 1.50700 * 109.47395 * 120.00243 * 2 1 3 11 11 O 1.21276 * 120.00229 * 119.99728 * 10 2 1 12 12 N 1.34778 * 119.99732 * 299.99986 * 10 2 1 13 13 C 1.46500 * 119.99805 * 179.97438 * 12 10 2 14 14 C 1.53065 * 109.45413 * 84.79314 * 13 12 10 15 15 C 1.53192 * 109.29648 * 181.24177 * 14 13 12 16 16 N 1.46922 * 108.89269 * 305.57538 * 15 14 13 17 17 C 1.36942 * 120.62796 * 233.51528 * 16 15 14 18 18 H 1.08007 * 119.99636 * 151.83092 * 17 16 15 19 19 C 1.38806 * 120.00203 * 331.83144 * 17 16 15 20 20 N 1.31624 * 120.00191 * 343.08250 * 19 17 16 21 21 Si 1.86800 * 120.00146 * 163.07925 * 19 17 16 22 22 H 1.48503 * 109.47195 * 89.99708 * 21 19 17 23 23 H 1.48498 * 109.47355 * 210.00264 * 21 19 17 24 24 H 1.48504 * 109.46850 * 330.00278 * 21 19 17 25 25 C 1.46924 * 118.73925 * 53.53382 * 16 15 14 26 26 C 1.53049 * 109.45577 * 204.99994 * 13 12 10 27 27 H 1.09000 * 109.47106 * 299.99799 * 1 2 3 28 28 H 1.09003 * 109.47289 * 59.99770 * 1 2 3 29 29 H 1.08999 * 109.47397 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47202 * 185.00017 * 4 2 1 31 31 H 1.09003 * 109.47298 * 304.99894 * 4 2 1 32 32 H 0.96998 * 120.00301 * 0.02562 * 12 10 2 33 33 H 1.08992 * 109.46107 * 324.96879 * 13 12 10 34 34 H 1.09005 * 109.39523 * 61.36241 * 14 13 12 35 35 H 1.09004 * 109.62174 * 301.25928 * 14 13 12 36 36 H 1.09003 * 109.58615 * 185.71531 * 15 14 13 37 37 H 1.08998 * 109.58372 * 65.43477 * 15 14 13 38 38 H 0.96995 * 120.00379 * 180.02562 * 20 19 17 39 39 H 1.09007 * 109.58325 * 66.18371 * 25 16 15 40 40 H 1.08996 * 109.58499 * 186.46256 * 25 16 15 41 41 H 1.09002 * 109.49883 * 58.66699 * 26 13 12 42 42 H 1.08993 * 109.49715 * 298.56552 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 16 1.5601 0.2156 -2.7266 6 6 2.2417 -0.7805 -4.0808 7 9 1.6770 -2.0600 -4.0486 8 9 1.9449 -0.1699 -5.3040 9 9 3.6295 -0.8794 -3.9341 10 6 2.0324 -0.7104 1.2304 11 8 2.7296 -1.6965 1.1191 12 7 1.7068 -0.2500 2.4545 13 6 2.1947 -0.9410 3.6507 14 6 3.6001 -0.4393 3.9915 15 6 4.1191 -1.1863 5.2242 16 7 3.1435 -1.0424 6.3133 17 6 3.5312 -0.5721 7.5396 18 1 2.8239 -0.0477 8.1651 19 6 4.8331 -0.7694 7.9788 20 7 5.5941 -1.6723 7.3973 21 14 5.5052 0.2465 9.3950 22 1 5.2309 -0.4498 10.6776 23 1 6.9708 0.4188 9.2288 24 1 4.8481 1.5782 9.4043 25 6 1.7442 -1.4131 6.0618 26 6 1.2501 -0.6612 4.8219 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 3.1263 -0.7994 -1.2056 31 1 1.6054 -1.7198 -1.2952 32 1 1.1488 0.5384 2.5436 33 1 2.2304 -2.0137 3.4612 34 1 3.5616 0.6293 4.2031 35 1 4.2676 -0.6200 3.1489 36 1 5.0754 -0.7633 5.5320 37 1 4.2466 -2.2420 4.9849 38 1 6.5037 -1.8105 7.7044 39 1 1.6761 -2.4872 5.8892 40 1 1.1340 -1.1421 6.9234 41 1 0.2455 -0.9993 4.5678 42 1 1.2332 0.4089 5.0281 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001359913034.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:29 Heat of formation + Delta-G solvation = -167.765120 kcal Electronic energy + Delta-G solvation = -27385.368768 eV Core-core repulsion = 22884.361609 eV Total energy + Delta-G solvation = -4501.007159 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.117 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -50.64934 -48.28411 -48.22766 -40.12340 -37.56256 -34.92773 -34.54353 -32.14030 -30.12301 -29.54919 -28.01729 -26.79542 -25.38906 -23.79205 -22.29938 -21.72092 -20.25352 -19.77369 -19.20859 -19.08835 -19.00036 -17.61803 -16.84561 -16.04408 -15.80493 -15.70624 -15.10140 -15.08370 -14.85548 -14.64071 -14.38473 -14.36041 -14.30391 -14.14310 -13.81695 -13.60414 -13.55982 -13.06882 -12.81015 -12.59875 -12.56560 -12.38851 -11.98714 -11.74313 -11.53722 -11.17395 -10.99397 -10.97716 -10.74279 -10.45467 -10.29862 -10.12526 -9.90597 -9.80661 -9.52776 -8.92374 -8.80352 -8.46623 -6.71983 -5.81817 -3.25121 -0.36763 1.20550 2.59000 2.62202 3.20706 3.35513 3.42596 3.42889 3.43728 3.44343 4.00658 4.32197 4.46608 4.52656 4.82485 5.02060 5.14127 5.23627 5.31662 5.37157 5.40213 5.47849 5.56898 5.73193 5.76002 6.01610 6.17928 6.26416 6.36070 6.53787 6.60077 6.71399 6.82599 6.88369 7.32557 7.55241 7.64764 7.76399 8.22561 8.41831 9.17599 9.80827 10.37284 11.26824 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.026527 B = 0.002065 C = 0.001995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.278091 B =13555.607578 C =14034.655273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.096 4.096 3 H 0.110 0.890 4 C -0.075 4.075 5 S -0.165 6.165 6 C 0.464 3.536 7 F -0.167 7.167 8 F -0.152 7.152 9 F -0.167 7.167 10 C 0.521 3.479 11 O -0.536 6.536 12 N -0.718 5.718 13 C 0.150 3.850 14 C -0.146 4.146 15 C 0.173 3.827 16 N -0.592 5.592 17 C -0.255 4.255 18 H 0.066 0.934 19 C 0.003 3.997 20 N -0.901 5.901 21 Si 0.902 3.098 22 H -0.287 1.287 23 H -0.289 1.289 24 H -0.279 1.279 25 C 0.148 3.852 26 C -0.138 4.138 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.110 0.890 31 H 0.107 0.893 32 H 0.396 0.604 33 H 0.082 0.918 34 H 0.055 0.945 35 H 0.053 0.947 36 H 0.089 0.911 37 H 0.020 0.980 38 H 0.255 0.745 39 H 0.020 0.980 40 H 0.059 0.941 41 H 0.055 0.945 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.452 5.111 -21.275 24.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.119 4.119 3 H 0.128 0.872 4 C -0.224 4.224 5 S 0.057 5.943 6 C 0.303 3.697 7 F -0.149 7.149 8 F -0.133 7.133 9 F -0.149 7.149 10 C 0.304 3.696 11 O -0.413 6.413 12 N -0.368 5.368 13 C 0.047 3.953 14 C -0.187 4.187 15 C 0.047 3.953 16 N -0.315 5.315 17 C -0.385 4.385 18 H 0.083 0.917 19 C -0.196 4.196 20 N -0.545 5.545 21 Si 0.732 3.268 22 H -0.214 1.214 23 H -0.215 1.215 24 H -0.205 1.205 25 C 0.021 3.979 26 C -0.178 4.178 27 H 0.089 0.911 28 H 0.093 0.907 29 H 0.087 0.913 30 H 0.129 0.871 31 H 0.126 0.874 32 H 0.230 0.770 33 H 0.100 0.900 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.107 0.893 37 H 0.039 0.961 38 H 0.065 0.935 39 H 0.038 0.962 40 H 0.077 0.923 41 H 0.074 0.926 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -11.302 5.244 -21.443 24.799 hybrid contribution 0.954 -0.299 0.533 1.133 sum -10.348 4.945 -20.909 23.848 Atomic orbital electron populations 1.21909 0.91690 1.03717 1.03415 1.21068 0.98523 1.01183 0.91114 0.87185 1.23555 1.06552 1.01402 0.90870 1.87969 1.73003 1.34452 0.98889 1.22700 0.78399 0.81309 0.87311 1.93327 1.84425 1.40739 1.96426 1.93253 1.92988 1.82609 1.44464 1.93337 1.29956 1.96134 1.95457 1.20113 0.80484 0.84669 0.84380 1.90746 1.37670 1.26252 1.86640 1.46286 1.52970 1.31770 1.05793 1.21095 0.94687 0.97163 0.82341 1.22569 0.94888 1.00931 1.00286 1.20749 0.94241 0.96309 0.84001 1.44098 1.02784 1.75273 1.09361 1.19151 0.96118 1.28896 0.94323 0.91663 1.25070 0.98674 0.97552 0.98306 1.70030 1.08758 1.32243 1.43489 0.86310 0.78163 0.80212 0.82141 1.21356 1.21541 1.20495 1.20839 0.87702 0.95416 0.93968 1.22332 0.97181 1.01857 0.96455 0.91108 0.90688 0.91276 0.87122 0.87405 0.77027 0.89962 0.92639 0.92833 0.89251 0.96142 0.93538 0.96217 0.92285 0.92585 0.91805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 8.92 37.16 0.33 -0.64 16 2 C -0.10 -0.80 2.72 -91.77 -0.25 -1.05 16 3 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 4 C -0.08 -0.67 4.70 37.16 0.17 -0.49 16 5 S -0.16 -1.33 20.58 -107.50 -2.21 -3.54 16 6 C 0.46 4.23 3.51 101.05 0.36 4.59 16 7 F -0.17 -1.61 17.34 2.25 0.04 -1.57 16 8 F -0.15 -1.39 17.36 2.25 0.04 -1.35 16 9 F -0.17 -1.67 17.34 2.25 0.04 -1.63 16 10 C 0.52 6.53 7.12 -10.99 -0.08 6.45 16 11 O -0.54 -9.04 15.58 5.56 0.09 -8.95 16 12 N -0.72 -8.75 4.97 -53.75 -0.27 -9.02 16 13 C 0.15 2.43 2.41 -67.87 -0.16 2.26 16 14 C -0.15 -2.78 5.66 -26.60 -0.15 -2.94 16 15 C 0.17 4.12 5.30 -3.71 -0.02 4.10 16 16 N -0.59 -14.43 3.00 -172.32 -0.52 -14.95 16 17 C -0.26 -6.84 9.58 -15.06 -0.14 -6.99 16 18 H 0.07 1.70 7.89 -52.48 -0.41 1.29 16 19 C 0.00 0.08 4.92 -17.43 -0.09 -0.01 16 20 N -0.90 -26.04 11.20 55.49 0.62 -25.42 16 21 Si 0.90 21.35 29.59 -169.99 -5.03 16.33 16 22 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 25 C 0.15 2.93 6.52 -3.71 -0.02 2.91 16 26 C -0.14 -2.14 5.55 -26.61 -0.15 -2.29 16 27 H 0.07 0.38 7.56 -51.93 -0.39 -0.01 16 28 H 0.07 0.43 7.13 -51.93 -0.37 0.06 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.11 1.09 7.95 -51.93 -0.41 0.68 16 31 H 0.11 0.98 8.14 -51.92 -0.42 0.56 16 32 H 0.40 3.63 8.02 -40.82 -0.33 3.30 16 33 H 0.08 1.51 7.58 -51.93 -0.39 1.12 16 34 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 35 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 36 H 0.09 2.38 6.06 -51.93 -0.31 2.07 16 37 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 39 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.06 1.13 7.93 -51.93 -0.41 0.72 16 41 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 366.89 15.07 5.53 5.53 Total: -1.00 -30.66 366.89 -7.85 -38.51 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -5.98 Total: 0.17 kcal Atomic # 6 Polarization: 6.10 SS G_CDS: -0.20 Total: 5.90 kcal Atomic # 7 Polarization: -49.22 SS G_CDS: -0.16 Total: -49.39 kcal Atomic # 8 Polarization: -9.04 SS G_CDS: 0.09 Total: -8.95 kcal Atomic # 9 Polarization: -4.67 SS G_CDS: 0.12 Total: -4.55 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.03 Total: 16.33 kcal Atomic # 16 Polarization: -1.33 SS G_CDS: -2.21 Total: -3.54 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -30.66 -7.85 -38.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001359913034.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.257 kcal (2) G-P(sol) polarization free energy of solvation -30.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds