Wall clock time and date at job start Tue Mar 31 2020 23:06:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47397 * 2 1 4 4 C 1.53000 * 109.47212 * 240.00139 * 2 1 3 5 5 S 1.81398 * 109.47160 * 64.99816 * 4 2 1 6 6 C 1.81407 * 103.00187 * 180.02562 * 5 4 2 7 7 F 1.39896 * 109.46945 * 60.00114 * 6 5 4 8 8 F 1.39895 * 109.47092 * 180.02562 * 6 5 4 9 9 F 1.39898 * 109.46622 * 300.00009 * 6 5 4 10 10 C 1.50700 * 109.47395 * 120.00243 * 2 1 3 11 11 O 1.21276 * 120.00229 * 119.99728 * 10 2 1 12 12 N 1.34778 * 119.99732 * 299.99986 * 10 2 1 13 13 C 1.46500 * 119.99805 * 179.97438 * 12 10 2 14 14 C 1.53065 * 109.45413 * 84.79314 * 13 12 10 15 15 C 1.53192 * 109.29648 * 181.24177 * 14 13 12 16 16 N 1.46922 * 108.89269 * 305.57538 * 15 14 13 17 17 C 1.36942 * 120.62796 * 233.51528 * 16 15 14 18 18 H 1.08007 * 119.99636 * 151.83092 * 17 16 15 19 19 C 1.38806 * 120.00203 * 331.83144 * 17 16 15 20 20 N 1.31624 * 120.00191 * 343.08250 * 19 17 16 21 21 Si 1.86800 * 120.00146 * 163.07925 * 19 17 16 22 22 H 1.48503 * 109.47195 * 89.99708 * 21 19 17 23 23 H 1.48498 * 109.47355 * 210.00264 * 21 19 17 24 24 H 1.48504 * 109.46850 * 330.00278 * 21 19 17 25 25 C 1.46924 * 118.73925 * 53.53382 * 16 15 14 26 26 C 1.53049 * 109.45577 * 204.99994 * 13 12 10 27 27 H 1.09000 * 109.47106 * 299.99799 * 1 2 3 28 28 H 1.09003 * 109.47289 * 59.99770 * 1 2 3 29 29 H 1.08999 * 109.47397 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47202 * 185.00017 * 4 2 1 31 31 H 1.09003 * 109.47298 * 304.99894 * 4 2 1 32 32 H 0.96998 * 120.00301 * 0.02562 * 12 10 2 33 33 H 1.08992 * 109.46107 * 324.96879 * 13 12 10 34 34 H 1.09005 * 109.39523 * 61.36241 * 14 13 12 35 35 H 1.09004 * 109.62174 * 301.25928 * 14 13 12 36 36 H 1.09003 * 109.58615 * 185.71531 * 15 14 13 37 37 H 1.08998 * 109.58372 * 65.43477 * 15 14 13 38 38 H 0.96995 * 120.00379 * 180.02562 * 20 19 17 39 39 H 1.09007 * 109.58325 * 66.18371 * 25 16 15 40 40 H 1.08996 * 109.58499 * 186.46256 * 25 16 15 41 41 H 1.09002 * 109.49883 * 58.66699 * 26 13 12 42 42 H 1.08993 * 109.49715 * 298.56552 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 16 1.5601 0.2156 -2.7266 6 6 2.2417 -0.7805 -4.0808 7 9 1.6770 -2.0600 -4.0486 8 9 1.9449 -0.1699 -5.3040 9 9 3.6295 -0.8794 -3.9341 10 6 2.0324 -0.7104 1.2304 11 8 2.7296 -1.6965 1.1191 12 7 1.7068 -0.2500 2.4545 13 6 2.1947 -0.9410 3.6507 14 6 3.6001 -0.4393 3.9915 15 6 4.1191 -1.1863 5.2242 16 7 3.1435 -1.0424 6.3133 17 6 3.5312 -0.5721 7.5396 18 1 2.8239 -0.0477 8.1651 19 6 4.8331 -0.7694 7.9788 20 7 5.5941 -1.6723 7.3973 21 14 5.5052 0.2465 9.3950 22 1 5.2309 -0.4498 10.6776 23 1 6.9708 0.4188 9.2288 24 1 4.8481 1.5782 9.4043 25 6 1.7442 -1.4131 6.0618 26 6 1.2501 -0.6612 4.8219 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 3.1263 -0.7994 -1.2056 31 1 1.6054 -1.7198 -1.2952 32 1 1.1488 0.5384 2.5436 33 1 2.2304 -2.0137 3.4612 34 1 3.5616 0.6293 4.2031 35 1 4.2676 -0.6200 3.1489 36 1 5.0754 -0.7633 5.5320 37 1 4.2466 -2.2420 4.9849 38 1 6.5037 -1.8105 7.7044 39 1 1.6761 -2.4872 5.8892 40 1 1.1340 -1.1421 6.9234 41 1 0.2455 -0.9993 4.5678 42 1 1.2332 0.4089 5.0281 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001359913034.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:25 Heat of formation + Delta-G solvation = -186.238382 kcal Electronic energy + Delta-G solvation = -27386.169829 eV Core-core repulsion = 22884.361609 eV Total energy + Delta-G solvation = -4501.808219 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.117 amu Computer time = 4.11 seconds Orbital eigenvalues (eV) -51.38243 -49.01235 -48.97772 -41.21120 -39.08030 -36.06421 -35.73476 -33.85222 -31.75811 -31.19915 -28.68983 -27.50020 -27.06069 -24.99135 -23.90583 -23.17363 -21.33833 -20.87698 -20.30815 -19.82679 -19.76540 -18.85189 -18.35771 -17.30801 -16.74669 -16.63426 -16.44838 -15.88870 -15.82952 -15.69641 -15.38305 -15.35666 -15.20367 -15.14715 -15.09935 -15.06015 -14.73825 -14.34757 -14.18973 -14.03895 -13.36138 -13.31813 -13.15402 -13.00484 -12.69404 -12.57774 -12.53072 -12.34660 -12.12152 -12.06279 -11.84702 -11.68567 -11.53409 -11.37467 -10.78906 -10.58193 -10.00676 -9.54803 -8.71051 -7.87839 -5.34093 -1.06209 0.49538 1.47354 1.49010 1.58595 1.60067 1.90641 2.19427 2.51586 2.69447 2.71547 3.28440 3.30765 3.63754 3.65009 3.74691 3.90870 4.08622 4.15801 4.34381 4.38723 4.48331 4.52116 4.67448 4.80848 4.83750 4.87871 4.92772 5.06222 5.08691 5.14371 5.27286 5.33017 5.46957 5.55117 5.64385 5.70336 6.38575 6.57841 7.13427 7.26389 7.84669 8.36849 9.19200 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.026527 B = 0.002065 C = 0.001995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.278091 B =13555.607578 C =14034.655273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.083 4.083 3 H 0.133 0.867 4 C -0.082 4.082 5 S -0.127 6.127 6 C 0.457 3.543 7 F -0.172 7.172 8 F -0.152 7.152 9 F -0.175 7.175 10 C 0.519 3.481 11 O -0.584 6.584 12 N -0.704 5.704 13 C 0.162 3.838 14 C -0.130 4.130 15 C 0.182 3.818 16 N -0.610 5.610 17 C -0.260 4.260 18 H 0.074 0.926 19 C -0.055 4.055 20 N -0.939 5.939 21 Si 0.968 3.032 22 H -0.285 1.285 23 H -0.296 1.296 24 H -0.266 1.266 25 C 0.140 3.860 26 C -0.121 4.121 27 H 0.089 0.911 28 H 0.087 0.913 29 H 0.062 0.938 30 H 0.096 0.904 31 H 0.102 0.898 32 H 0.417 0.583 33 H 0.057 0.943 34 H 0.063 0.937 35 H 0.046 0.954 36 H 0.053 0.947 37 H -0.013 1.013 38 H 0.249 0.751 39 H 0.010 0.990 40 H 0.067 0.933 41 H 0.094 0.906 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.963 7.433 -21.920 27.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.106 4.106 3 H 0.151 0.849 4 C -0.231 4.231 5 S 0.095 5.905 6 C 0.295 3.705 7 F -0.154 7.154 8 F -0.134 7.134 9 F -0.157 7.157 10 C 0.304 3.696 11 O -0.464 6.464 12 N -0.355 5.355 13 C 0.057 3.943 14 C -0.171 4.171 15 C 0.055 3.945 16 N -0.333 5.333 17 C -0.390 4.390 18 H 0.092 0.908 19 C -0.250 4.250 20 N -0.586 5.586 21 Si 0.796 3.204 22 H -0.211 1.211 23 H -0.223 1.223 24 H -0.191 1.191 25 C 0.014 3.986 26 C -0.160 4.160 27 H 0.108 0.892 28 H 0.106 0.894 29 H 0.081 0.919 30 H 0.115 0.885 31 H 0.121 0.879 32 H 0.254 0.746 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.065 0.935 36 H 0.072 0.928 37 H 0.005 0.995 38 H 0.058 0.942 39 H 0.028 0.972 40 H 0.085 0.915 41 H 0.112 0.888 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -13.881 7.609 -22.108 27.191 hybrid contribution 1.702 -1.077 0.695 2.131 sum -12.179 6.531 -21.412 25.485 Atomic orbital electron populations 1.21948 0.89629 1.03895 1.04986 1.21038 0.99950 1.01322 0.88312 0.84892 1.23532 1.05818 1.01738 0.92005 1.87813 1.72310 1.33138 0.97228 1.22962 0.78178 0.81441 0.87872 1.93319 1.84415 1.41184 1.96476 1.93250 1.92943 1.82547 1.44647 1.93324 1.30650 1.96191 1.95518 1.20839 0.79339 0.84013 0.85378 1.90740 1.39766 1.28540 1.87317 1.45959 1.52911 1.32157 1.04505 1.20657 0.93279 0.96020 0.84350 1.22305 0.96751 1.00494 0.97516 1.20462 0.93384 0.94658 0.85995 1.44357 1.04553 1.75587 1.08851 1.19557 0.96320 1.28134 0.95017 0.90842 1.25878 0.99227 0.98788 1.01144 1.70206 1.08714 1.34211 1.45421 0.85267 0.76908 0.79147 0.79063 1.21148 1.22278 1.19058 1.21061 0.85430 0.95559 0.96580 1.22123 0.98360 1.01959 0.93559 0.89240 0.89409 0.91851 0.88498 0.87942 0.74574 0.92490 0.91868 0.93542 0.92811 0.99495 0.94210 0.97212 0.91452 0.88805 0.90489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 108. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 8.92 71.98 0.64 -0.71 16 2 C -0.08 -1.17 2.72 -11.54 -0.03 -1.20 16 3 H 0.13 1.33 8.14 -2.39 -0.02 1.31 16 4 C -0.08 -1.34 4.70 71.98 0.34 -1.00 16 5 S -0.13 -1.77 20.58 -56.49 -1.16 -2.93 16 6 C 0.46 7.84 3.51 113.37 0.40 8.24 16 7 F -0.17 -3.17 17.34 44.97 0.78 -2.40 16 8 F -0.15 -2.62 17.36 44.97 0.78 -1.83 16 9 F -0.17 -3.40 17.34 44.97 0.78 -2.63 16 10 C 0.52 12.11 7.12 87.66 0.62 12.74 16 11 O -0.58 -19.69 15.58 -3.02 -0.05 -19.74 16 12 N -0.70 -15.22 4.97 -442.36 -2.20 -17.42 16 13 C 0.16 5.00 2.41 45.03 0.11 5.11 16 14 C -0.13 -4.97 5.66 30.68 0.17 -4.79 16 15 C 0.18 8.98 5.30 86.36 0.46 9.43 16 16 N -0.61 -30.01 3.00 -699.10 -2.09 -32.10 16 17 C -0.26 -13.99 9.58 84.03 0.81 -13.18 16 18 H 0.07 3.76 7.89 -2.91 -0.02 3.74 16 19 C -0.06 -3.08 4.92 84.86 0.42 -2.67 16 20 N -0.94 -56.42 11.20 21.65 0.24 -56.18 16 21 Si 0.97 44.42 29.59 68.60 2.03 46.45 16 22 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 23 H -0.30 -13.79 7.11 99.48 0.71 -13.08 16 24 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 25 C 0.14 5.39 6.52 86.36 0.56 5.95 16 26 C -0.12 -3.38 5.55 30.67 0.17 -3.21 16 27 H 0.09 0.52 7.56 -2.39 -0.02 0.51 16 28 H 0.09 0.64 7.13 -2.39 -0.02 0.62 16 29 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.10 1.87 7.95 -2.39 -0.02 1.85 16 31 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.42 5.78 8.02 -92.71 -0.74 5.03 16 33 H 0.06 2.10 7.58 -2.39 -0.02 2.08 16 34 H 0.06 2.31 8.14 -2.38 -0.02 2.29 16 35 H 0.05 1.81 8.14 -2.38 -0.02 1.79 16 36 H 0.05 3.02 6.06 -2.39 -0.01 3.00 16 37 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 38 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 39 H 0.01 0.40 8.14 -2.38 -0.02 0.38 16 40 H 0.07 2.46 7.93 -2.39 -0.02 2.44 16 41 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 42 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -69.66 366.89 4.08 -65.58 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: 0.30 Total: 8.48 kcal Atomic # 6 Polarization: 10.04 SS G_CDS: 4.67 Total: 14.71 kcal Atomic # 7 Polarization: -101.65 SS G_CDS: -4.05 Total: -105.70 kcal Atomic # 8 Polarization: -19.69 SS G_CDS: -0.05 Total: -19.74 kcal Atomic # 9 Polarization: -9.20 SS G_CDS: 2.34 Total: -6.86 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Atomic # 16 Polarization: -1.77 SS G_CDS: -1.16 Total: -2.93 kcal Total: -69.66 4.08 -65.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001359913034.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.654 kcal (2) G-P(sol) polarization free energy of solvation -69.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.11 seconds