Wall clock time and date at job start Tue Mar 31 2020 23:32:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35986 * 117.00252 * 2 1 4 4 C 1.38108 * 120.01057 * 0.02562 * 3 2 1 5 5 C 1.39742 * 119.86766 * 179.97438 * 4 3 2 6 6 C 1.47607 * 120.05557 * 180.02562 * 5 4 3 7 7 N 1.34770 * 119.99785 * 180.02562 * 6 5 4 8 8 O 1.21585 * 119.99777 * 0.02562 * 6 5 4 9 9 C 1.39731 * 119.89384 * 359.97438 * 5 4 3 10 10 C 1.37733 * 120.02182 * 359.97438 * 9 5 4 11 11 C 1.39015 * 120.13115 * 359.76212 * 10 9 5 12 12 N 1.39533 * 119.94448 * 180.27974 * 11 10 9 13 13 C 1.34774 * 120.00098 * 20.65477 * 12 11 10 14 14 O 1.21549 * 120.00150 * 5.37679 * 13 12 11 15 15 C 1.47854 * 120.00009 * 185.38334 * 13 12 11 16 16 C 1.39936 * 120.02593 * 359.71786 * 15 13 12 17 17 C 1.38325 * 120.36083 * 179.76470 * 16 15 13 18 18 C 1.37756 * 120.40803 * 0.52113 * 17 16 15 19 19 C 1.40760 * 120.04497 * 359.73741 * 18 17 16 20 20 C 1.41433 * 120.17652 * 180.02562 * 19 18 17 21 21 H 1.08003 * 119.99914 * 151.19551 * 20 19 18 22 22 C 1.39939 * 120.00416 * 331.20241 * 20 19 18 23 23 N 1.30827 * 120.00023 * 167.71145 * 22 20 19 24 24 Si 1.86804 * 119.99628 * 347.71330 * 22 20 19 25 25 H 1.48500 * 109.47132 * 95.24749 * 24 22 20 26 26 H 1.48498 * 109.46960 * 215.24808 * 24 22 20 27 27 H 1.48504 * 109.47015 * 335.24220 * 24 22 20 28 28 C 1.39004 * 120.02962 * 180.02562 * 15 13 12 29 29 H 1.08996 * 109.47080 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.47082 * 59.99662 * 1 2 3 31 31 H 1.08998 * 109.46757 * 299.99706 * 1 2 3 32 32 H 1.07999 * 120.06796 * 359.97438 * 4 3 2 33 33 H 0.97002 * 120.00746 * 359.97438 * 7 6 5 34 34 H 0.97007 * 119.99892 * 179.97438 * 7 6 5 35 35 H 1.08001 * 119.98676 * 180.02562 * 9 5 4 36 36 H 1.07996 * 119.93923 * 180.02562 * 10 9 5 37 37 H 0.96999 * 119.99842 * 200.65716 * 12 11 10 38 38 H 1.08010 * 119.82381 * 0.02562 * 16 15 13 39 39 H 1.07998 * 119.80043 * 180.23742 * 17 16 15 40 40 H 1.08002 * 119.97857 * 179.76549 * 18 17 16 41 41 H 0.97002 * 119.99566 * 179.97438 * 23 22 20 42 42 H 1.08006 * 120.20210 * 359.94821 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2945 2.3701 0.0005 5 6 1.9320 3.6136 0.0011 6 6 1.1325 4.8543 0.0022 7 7 1.7486 6.0529 0.0022 8 8 -0.0819 4.7949 0.0032 9 6 3.3277 3.6806 0.0016 10 6 4.0733 2.5224 0.0021 11 6 3.4400 1.2849 0.0071 12 7 4.1991 0.1141 0.0136 13 6 5.4816 0.1448 0.4267 14 8 5.9481 1.1692 0.8853 15 6 6.3211 -1.0678 0.3220 16 6 5.7830 -2.2491 -0.2005 17 6 6.5636 -3.3862 -0.3061 18 6 7.8762 -3.3721 0.1116 19 6 8.4335 -2.1946 0.6448 20 6 9.7810 -2.1768 1.0740 21 1 10.3467 -1.2574 1.0395 22 6 10.3816 -3.3505 1.5432 23 7 11.6779 -3.3997 1.7121 24 14 9.3320 -4.8471 1.9283 25 1 9.3129 -5.7541 0.7526 26 1 9.9020 -5.5639 3.0972 27 1 7.9467 -4.4130 2.2412 28 6 7.6438 -1.0370 0.7485 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 0.5138 0.8900 32 1 0.2159 2.3151 0.0005 33 1 2.7174 6.1004 0.0018 34 1 1.2231 6.8684 0.0026 35 1 3.8221 4.6408 0.0025 36 1 5.1519 2.5758 0.0030 37 1 3.8037 -0.7218 -0.2794 38 1 4.7537 -2.2721 -0.5271 39 1 6.1401 -4.2919 -0.7143 40 1 8.4783 -4.2649 0.0294 41 1 12.0941 -4.2131 2.0377 42 1 8.0622 -0.1286 1.1563 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361873568.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:32:41 Heat of formation + Delta-G solvation = -55.556371 kcal Electronic energy + Delta-G solvation = -27893.682973 eV Core-core repulsion = 23803.954340 eV Total energy + Delta-G solvation = -4089.728633 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.06985 -39.80631 -39.21105 -37.72960 -36.93843 -34.81333 -33.95578 -33.73902 -31.22071 -30.44068 -30.20179 -29.51719 -27.53907 -25.46278 -24.56954 -22.88430 -22.61201 -21.04725 -20.79398 -20.07105 -18.96414 -18.20927 -17.52309 -17.32535 -16.59599 -16.32542 -16.05261 -16.02068 -15.53743 -14.93593 -14.86476 -14.76639 -14.52912 -14.32524 -13.93307 -13.79575 -13.52264 -13.00870 -12.89429 -12.88088 -12.79922 -12.16048 -11.90480 -11.75414 -11.68738 -11.31883 -11.17510 -10.85193 -10.68871 -10.55090 -10.35931 -10.00143 -9.99643 -9.80764 -9.54657 -9.25194 -8.79643 -8.06566 -7.92003 -7.78741 -7.06622 -4.65278 0.58175 1.21559 1.72113 2.42171 2.64199 2.93291 2.98696 3.12378 3.14955 3.19557 3.27546 3.36420 3.74386 3.85349 4.38803 4.56438 4.61435 4.78292 4.83077 4.95853 5.01411 5.09411 5.22944 5.28136 5.38124 5.69500 5.71233 5.79784 5.89864 5.94389 6.12283 6.21636 6.30440 6.47432 6.53800 6.56263 6.65569 6.85641 7.04542 7.07400 7.14019 7.26195 7.36570 7.51291 7.63569 7.83269 7.97984 8.18272 8.33263 8.41301 8.61500 9.95193 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.021650 B = 0.002406 C = 0.002204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.967667 B =11632.583130 C =12699.415235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.317 6.317 3 C 0.077 3.923 4 C -0.124 4.124 5 C -0.141 4.141 6 C 0.570 3.430 7 N -0.851 5.851 8 O -0.548 6.548 9 C -0.091 4.091 10 C -0.121 4.121 11 C 0.172 3.828 12 N -0.661 5.661 13 C 0.566 3.434 14 O -0.523 6.523 15 C -0.111 4.111 16 C -0.215 4.215 17 C -0.081 4.081 18 C -0.218 4.218 19 C 0.080 3.920 20 C -0.435 4.435 21 H 0.095 0.905 22 C 0.079 3.921 23 N -0.804 5.804 24 Si 0.914 3.086 25 H -0.270 1.270 26 H -0.291 1.291 27 H -0.239 1.239 28 C -0.130 4.130 29 H 0.102 0.898 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.144 0.856 33 H 0.403 0.597 34 H 0.404 0.596 35 H 0.130 0.870 36 H 0.170 0.830 37 H 0.419 0.581 38 H 0.098 0.902 39 H 0.101 0.899 40 H 0.102 0.898 41 H 0.288 0.712 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.429 8.898 -4.005 19.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.231 6.231 3 C 0.030 3.970 4 C -0.144 4.144 5 C -0.145 4.145 6 C 0.357 3.643 7 N -0.415 5.415 8 O -0.427 6.427 9 C -0.110 4.110 10 C -0.141 4.141 11 C 0.074 3.926 12 N -0.304 5.304 13 C 0.359 3.641 14 O -0.401 6.401 15 C -0.114 4.114 16 C -0.235 4.235 17 C -0.099 4.099 18 C -0.237 4.237 19 C 0.076 3.924 20 C -0.463 4.463 21 H 0.113 0.887 22 C -0.140 4.140 23 N -0.428 5.428 24 Si 0.741 3.259 25 H -0.197 1.197 26 H -0.219 1.219 27 H -0.163 1.163 28 C -0.150 4.150 29 H 0.120 0.880 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.161 0.839 33 H 0.233 0.767 34 H 0.234 0.766 35 H 0.148 0.852 36 H 0.187 0.813 37 H 0.257 0.743 38 H 0.116 0.884 39 H 0.119 0.881 40 H 0.120 0.880 41 H 0.098 0.902 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -17.416 9.040 -3.601 19.950 hybrid contribution -0.453 -0.707 0.022 0.840 sum -17.869 8.333 -3.579 20.039 Atomic orbital electron populations 1.23081 0.77862 1.04100 1.01611 1.86026 1.21754 1.25867 1.89424 1.18479 0.90202 0.85138 1.03162 1.21017 1.00502 0.90192 1.02678 1.19513 0.93450 0.92753 1.08798 1.18191 0.87197 0.83984 0.74965 1.43747 1.11696 1.08006 1.78068 1.90797 1.13945 1.87592 1.50350 1.21096 0.91960 0.98651 0.99328 1.21580 1.03013 0.89126 1.00393 1.17468 0.86948 0.87920 1.00252 1.43459 1.12371 1.10235 1.64320 1.18989 0.80347 0.89283 0.75480 1.90607 1.72662 1.32990 1.43796 1.19255 0.94823 0.91826 1.05521 1.20395 0.98598 0.93483 1.11049 1.20487 0.93983 0.96647 0.98795 1.21126 0.96142 0.98994 1.07441 1.17704 0.93171 0.90957 0.90534 1.19568 0.94115 0.97505 1.35159 0.88727 1.26208 0.95108 1.00153 0.92524 1.69643 1.10724 1.29785 1.32637 0.86282 0.82114 0.79773 0.77728 1.19672 1.21884 1.16261 1.21241 0.91494 0.99362 1.02952 0.88003 0.92482 0.92459 0.83887 0.76748 0.76563 0.85218 0.81258 0.74283 0.88436 0.88057 0.88045 0.90180 0.86411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.32 -3.67 9.84 -19.70 -0.19 -3.86 16 3 C 0.08 0.99 6.70 -39.14 -0.26 0.73 16 4 C -0.12 -1.48 8.57 -39.07 -0.33 -1.81 16 5 C -0.14 -1.62 5.88 -104.95 -0.62 -2.23 16 6 C 0.57 6.38 8.04 -12.44 -0.10 6.28 16 7 N -0.85 -5.85 8.82 30.47 0.27 -5.58 16 8 O -0.55 -7.99 17.17 5.29 0.09 -7.90 16 9 C -0.09 -0.97 9.53 -39.21 -0.37 -1.35 16 10 C -0.12 -1.63 8.74 -39.48 -0.35 -1.98 16 11 C 0.17 2.45 6.50 -83.57 -0.54 1.91 16 12 N -0.66 -9.98 5.24 -10.60 -0.06 -10.04 16 13 C 0.57 10.34 7.61 -12.33 -0.09 10.25 16 14 O -0.52 -10.40 13.25 5.32 0.07 -10.33 16 15 C -0.11 -2.23 5.87 -105.04 -0.62 -2.84 16 16 C -0.22 -3.96 9.55 -38.91 -0.37 -4.33 16 17 C -0.08 -1.57 10.01 -39.73 -0.40 -1.97 16 18 C -0.22 -4.86 6.87 -38.81 -0.27 -5.12 16 19 C 0.08 1.91 5.19 -106.87 -0.55 1.36 16 20 C -0.44 -11.26 9.62 -37.73 -0.36 -11.62 16 21 H 0.09 2.57 8.06 -52.48 -0.42 2.15 16 22 C 0.08 1.99 5.47 -17.34 -0.09 1.90 16 23 N -0.80 -20.66 13.93 55.55 0.77 -19.88 16 24 Si 0.91 19.74 24.36 -169.99 -4.14 15.60 16 25 H -0.27 -5.61 6.78 56.52 0.38 -5.23 16 26 H -0.29 -6.14 7.11 56.52 0.40 -5.73 16 27 H -0.24 -5.25 6.42 56.52 0.36 -4.89 16 28 C -0.13 -2.95 9.34 -38.44 -0.36 -3.30 16 29 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.40 7.66 -51.93 -0.40 0.00 16 31 H 0.06 0.42 7.66 -51.93 -0.40 0.03 16 32 H 0.14 1.58 5.87 -52.49 -0.31 1.27 16 33 H 0.40 1.80 6.85 -40.82 -0.28 1.52 16 34 H 0.40 2.15 8.93 -40.82 -0.36 1.79 16 35 H 0.13 0.93 6.39 -52.49 -0.34 0.60 16 36 H 0.17 2.54 5.45 -52.49 -0.29 2.25 16 37 H 0.42 5.64 6.27 -40.82 -0.26 5.38 16 38 H 0.10 1.46 6.39 -52.48 -0.34 1.12 16 39 H 0.10 1.67 8.06 -52.49 -0.42 1.24 16 40 H 0.10 2.25 4.14 -52.49 -0.22 2.03 16 41 H 0.29 6.67 8.30 -40.82 -0.34 6.33 16 42 H 0.12 2.68 7.64 -52.48 -0.40 2.28 16 LS Contribution 352.00 15.07 5.30 5.30 Total: -1.00 -30.69 352.00 -6.62 -37.32 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: -4.04 Total: 12.31 kcal Atomic # 6 Polarization: -8.23 SS G_CDS: -4.70 Total: -12.93 kcal Atomic # 7 Polarization: -36.49 SS G_CDS: 0.99 Total: -35.50 kcal Atomic # 8 Polarization: -22.06 SS G_CDS: -0.03 Total: -22.10 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -4.14 Total: 15.60 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.69 -6.62 -37.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361873568.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.241 kcal (2) G-P(sol) polarization free energy of solvation -30.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds