Wall clock time and date at job start Tue Mar 31 2020 23:32:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35986 * 117.00252 * 2 1 4 4 C 1.38108 * 120.01057 * 0.02562 * 3 2 1 5 5 C 1.39742 * 119.86766 * 179.97438 * 4 3 2 6 6 C 1.47607 * 120.05557 * 180.02562 * 5 4 3 7 7 N 1.34770 * 119.99785 * 180.02562 * 6 5 4 8 8 O 1.21585 * 119.99777 * 0.02562 * 6 5 4 9 9 C 1.39731 * 119.89384 * 359.97438 * 5 4 3 10 10 C 1.37733 * 120.02182 * 359.97438 * 9 5 4 11 11 C 1.39015 * 120.13115 * 359.76212 * 10 9 5 12 12 N 1.39533 * 119.94448 * 180.27974 * 11 10 9 13 13 C 1.34774 * 120.00098 * 20.65477 * 12 11 10 14 14 O 1.21549 * 120.00150 * 5.37679 * 13 12 11 15 15 C 1.47854 * 120.00009 * 185.38334 * 13 12 11 16 16 C 1.39936 * 120.02593 * 359.71786 * 15 13 12 17 17 C 1.38325 * 120.36083 * 179.76470 * 16 15 13 18 18 C 1.37756 * 120.40803 * 0.52113 * 17 16 15 19 19 C 1.40760 * 120.04497 * 359.73741 * 18 17 16 20 20 C 1.41433 * 120.17652 * 180.02562 * 19 18 17 21 21 H 1.08003 * 119.99914 * 151.19551 * 20 19 18 22 22 C 1.39939 * 120.00416 * 331.20241 * 20 19 18 23 23 N 1.30827 * 120.00023 * 167.71145 * 22 20 19 24 24 Si 1.86804 * 119.99628 * 347.71330 * 22 20 19 25 25 H 1.48500 * 109.47132 * 95.24749 * 24 22 20 26 26 H 1.48498 * 109.46960 * 215.24808 * 24 22 20 27 27 H 1.48504 * 109.47015 * 335.24220 * 24 22 20 28 28 C 1.39004 * 120.02962 * 180.02562 * 15 13 12 29 29 H 1.08996 * 109.47080 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.47082 * 59.99662 * 1 2 3 31 31 H 1.08998 * 109.46757 * 299.99706 * 1 2 3 32 32 H 1.07999 * 120.06796 * 359.97438 * 4 3 2 33 33 H 0.97002 * 120.00746 * 359.97438 * 7 6 5 34 34 H 0.97007 * 119.99892 * 179.97438 * 7 6 5 35 35 H 1.08001 * 119.98676 * 180.02562 * 9 5 4 36 36 H 1.07996 * 119.93923 * 180.02562 * 10 9 5 37 37 H 0.96999 * 119.99842 * 200.65716 * 12 11 10 38 38 H 1.08010 * 119.82381 * 0.02562 * 16 15 13 39 39 H 1.07998 * 119.80043 * 180.23742 * 17 16 15 40 40 H 1.08002 * 119.97857 * 179.76549 * 18 17 16 41 41 H 0.97002 * 119.99566 * 179.97438 * 23 22 20 42 42 H 1.08006 * 120.20210 * 359.94821 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2945 2.3701 0.0005 5 6 1.9320 3.6136 0.0011 6 6 1.1325 4.8543 0.0022 7 7 1.7486 6.0529 0.0022 8 8 -0.0819 4.7949 0.0032 9 6 3.3277 3.6806 0.0016 10 6 4.0733 2.5224 0.0021 11 6 3.4400 1.2849 0.0071 12 7 4.1991 0.1141 0.0136 13 6 5.4816 0.1448 0.4267 14 8 5.9481 1.1692 0.8853 15 6 6.3211 -1.0678 0.3220 16 6 5.7830 -2.2491 -0.2005 17 6 6.5636 -3.3862 -0.3061 18 6 7.8762 -3.3721 0.1116 19 6 8.4335 -2.1946 0.6448 20 6 9.7810 -2.1768 1.0740 21 1 10.3467 -1.2574 1.0395 22 6 10.3816 -3.3505 1.5432 23 7 11.6779 -3.3997 1.7121 24 14 9.3320 -4.8471 1.9283 25 1 9.3129 -5.7541 0.7526 26 1 9.9020 -5.5639 3.0972 27 1 7.9467 -4.4130 2.2412 28 6 7.6438 -1.0370 0.7485 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 0.5138 0.8900 32 1 0.2159 2.3151 0.0005 33 1 2.7174 6.1004 0.0018 34 1 1.2231 6.8684 0.0026 35 1 3.8221 4.6408 0.0025 36 1 5.1519 2.5758 0.0030 37 1 3.8037 -0.7218 -0.2794 38 1 4.7537 -2.2721 -0.5271 39 1 6.1401 -4.2919 -0.7143 40 1 8.4783 -4.2649 0.0294 41 1 12.0941 -4.2131 2.0377 42 1 8.0622 -0.1286 1.1563 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361873568.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:32:40 Heat of formation + Delta-G solvation = -78.274250 kcal Electronic energy + Delta-G solvation = -27894.668094 eV Core-core repulsion = 23803.954340 eV Total energy + Delta-G solvation = -4090.713754 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.15860 -40.96345 -40.17055 -39.26192 -38.00098 -36.06160 -35.54270 -34.72256 -32.78063 -31.93706 -31.31340 -30.66655 -28.24704 -27.19327 -25.85196 -24.15637 -23.61609 -22.52638 -21.98300 -21.43363 -20.02930 -19.48850 -18.60332 -18.31324 -18.07022 -17.59205 -17.13627 -16.89774 -16.59234 -16.48056 -16.16000 -15.87955 -15.77893 -15.49162 -15.24563 -15.01588 -14.58237 -14.52124 -14.45982 -13.97689 -13.92012 -13.71204 -13.37422 -12.94689 -12.74103 -12.64209 -12.45046 -12.31698 -12.09446 -11.75618 -11.67779 -11.57963 -11.36217 -11.15126 -10.75865 -10.72303 -9.79138 -9.65838 -9.62344 -8.90703 -8.90171 -6.57119 -0.44657 0.16858 0.28193 0.72973 1.25506 1.42430 1.48723 1.61268 1.84210 1.97256 2.10879 2.19334 2.51634 2.61900 2.78571 3.42946 3.58076 3.73404 3.83936 4.00116 4.02829 4.21923 4.26310 4.36779 4.39490 4.39751 4.51481 4.70006 4.75497 4.82291 4.87885 4.88921 5.00571 5.13381 5.17196 5.27667 5.39922 5.59741 5.62357 5.67642 5.82249 5.86321 6.04875 6.24059 6.27102 6.35771 6.37498 6.61971 6.72769 6.97834 7.24996 8.18281 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.021650 B = 0.002406 C = 0.002204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.967667 B =11632.583130 C =12699.415235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.327 6.327 3 C 0.085 3.915 4 C -0.129 4.129 5 C -0.138 4.138 6 C 0.568 3.432 7 N -0.828 5.828 8 O -0.586 6.586 9 C -0.080 4.080 10 C -0.132 4.132 11 C 0.143 3.857 12 N -0.645 5.645 13 C 0.567 3.433 14 O -0.547 6.547 15 C -0.114 4.114 16 C -0.183 4.183 17 C -0.082 4.082 18 C -0.221 4.221 19 C 0.063 3.937 20 C -0.480 4.480 21 H 0.053 0.947 22 C 0.040 3.960 23 N -0.852 5.852 24 Si 0.970 3.030 25 H -0.250 1.250 26 H -0.284 1.284 27 H -0.243 1.243 28 C -0.156 4.156 29 H 0.125 0.875 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.152 0.848 33 H 0.417 0.583 34 H 0.415 0.585 35 H 0.165 0.835 36 H 0.153 0.847 37 H 0.427 0.573 38 H 0.145 0.855 39 H 0.147 0.853 40 H 0.105 0.895 41 H 0.295 0.705 42 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.528 8.284 -5.097 23.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.241 6.241 3 C 0.038 3.962 4 C -0.149 4.149 5 C -0.142 4.142 6 C 0.355 3.645 7 N -0.392 5.392 8 O -0.467 6.467 9 C -0.100 4.100 10 C -0.152 4.152 11 C 0.046 3.954 12 N -0.289 5.289 13 C 0.358 3.642 14 O -0.426 6.426 15 C -0.117 4.117 16 C -0.202 4.202 17 C -0.100 4.100 18 C -0.241 4.241 19 C 0.061 3.939 20 C -0.509 4.509 21 H 0.071 0.929 22 C -0.174 4.174 23 N -0.479 5.479 24 Si 0.793 3.207 25 H -0.175 1.175 26 H -0.211 1.211 27 H -0.166 1.166 28 C -0.176 4.176 29 H 0.144 0.856 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.169 0.831 33 H 0.249 0.751 34 H 0.247 0.753 35 H 0.182 0.818 36 H 0.170 0.830 37 H 0.267 0.733 38 H 0.163 0.837 39 H 0.165 0.835 40 H 0.122 0.878 41 H 0.105 0.895 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -21.527 8.467 -4.718 23.608 hybrid contribution 0.490 -0.296 0.244 0.622 sum -21.036 8.171 -4.474 23.007 Atomic orbital electron populations 1.23378 0.75918 1.05925 1.02220 1.86008 1.23709 1.25253 1.89157 1.18423 0.89621 0.85881 1.02303 1.21195 1.01013 0.90242 1.02491 1.19700 0.93758 0.93038 1.07744 1.18169 0.86635 0.84801 0.74896 1.43579 1.12623 1.07203 1.75833 1.90787 1.15396 1.88116 1.52446 1.21346 0.91597 0.99304 0.97723 1.21530 1.02436 0.90106 1.01171 1.17633 0.87632 0.87623 1.02516 1.43136 1.11099 1.11131 1.63517 1.18688 0.81307 0.88319 0.75846 1.90613 1.73460 1.33545 1.44999 1.19496 0.93986 0.93539 1.04644 1.20994 1.00434 0.91889 1.06896 1.20997 0.92674 0.98683 0.97600 1.21342 0.97662 0.98132 1.06939 1.17784 0.92585 0.92436 0.91115 1.19500 0.95538 0.96770 1.39122 0.92879 1.26944 0.96081 1.02458 0.91936 1.69688 1.12038 1.31066 1.35086 0.85450 0.80087 0.76780 0.78396 1.17493 1.21091 1.16606 1.21178 0.93053 0.98619 1.04782 0.85647 0.91614 0.92111 0.83068 0.75093 0.75289 0.81768 0.83023 0.73297 0.83732 0.83515 0.87756 0.89483 0.88402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.81 113.37 1.11 1.36 16 2 O -0.33 -6.64 9.84 -93.40 -0.92 -7.56 16 3 C 0.09 1.98 6.70 22.56 0.15 2.13 16 4 C -0.13 -2.81 8.57 22.60 0.19 -2.62 16 5 C -0.14 -2.85 5.88 -20.08 -0.12 -2.97 16 6 C 0.57 11.35 8.04 86.72 0.70 12.04 16 7 N -0.83 -8.88 8.82 -175.77 -1.55 -10.43 16 8 O -0.59 -16.02 17.17 -3.98 -0.07 -16.09 16 9 C -0.08 -1.54 9.53 22.51 0.21 -1.33 16 10 C -0.13 -3.42 8.74 22.34 0.20 -3.22 16 11 C 0.14 3.83 6.50 38.42 0.25 4.08 16 12 N -0.65 -18.16 5.24 -305.74 -1.60 -19.76 16 13 C 0.57 20.25 7.61 86.79 0.66 20.91 16 14 O -0.55 -22.12 13.25 -3.87 -0.05 -22.17 16 15 C -0.11 -4.42 5.87 -20.14 -0.12 -4.54 16 16 C -0.18 -5.98 9.55 22.70 0.22 -5.77 16 17 C -0.08 -2.84 10.01 22.18 0.22 -2.62 16 18 C -0.22 -9.56 6.87 22.77 0.16 -9.40 16 19 C 0.06 3.14 5.19 -21.32 -0.11 3.03 16 20 C -0.48 -26.73 9.62 23.47 0.23 -26.51 16 21 H 0.05 3.24 8.06 -2.91 -0.02 3.21 16 22 C 0.04 2.09 5.47 85.25 0.47 2.56 16 23 N -0.85 -46.43 13.93 21.82 0.30 -46.12 16 24 Si 0.97 40.77 24.36 68.60 1.67 42.44 16 25 H -0.25 -9.59 6.78 99.48 0.67 -8.91 16 26 H -0.28 -11.44 7.11 99.48 0.71 -10.73 16 27 H -0.24 -10.17 6.42 99.48 0.64 -9.54 16 28 C -0.16 -7.32 9.34 23.01 0.21 -7.10 16 29 H 0.13 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.07 0.73 7.66 -2.38 -0.02 0.71 16 31 H 0.06 0.74 7.66 -2.39 -0.02 0.72 16 32 H 0.15 3.02 5.87 -2.91 -0.02 3.00 16 33 H 0.42 2.25 6.85 -92.71 -0.63 1.62 16 34 H 0.41 3.20 8.93 -92.70 -0.83 2.37 16 35 H 0.16 1.83 6.39 -2.91 -0.02 1.82 16 36 H 0.15 4.54 5.45 -2.91 -0.02 4.53 16 37 H 0.43 10.01 6.27 -92.71 -0.58 9.43 16 38 H 0.15 3.43 6.39 -2.91 -0.02 3.41 16 39 H 0.15 3.86 8.06 -2.91 -0.02 3.84 16 40 H 0.10 4.42 4.14 -2.91 -0.01 4.41 16 41 H 0.29 14.35 8.30 -92.71 -0.77 13.58 16 42 H 0.10 4.85 7.64 -2.91 -0.02 4.83 16 Total: -1.00 -71.77 352.00 1.41 -70.36 By element: Atomic # 1 Polarization: 30.27 SS G_CDS: -1.00 Total: 29.27 kcal Atomic # 6 Polarization: -24.57 SS G_CDS: 4.63 Total: -19.94 kcal Atomic # 7 Polarization: -73.46 SS G_CDS: -2.85 Total: -76.31 kcal Atomic # 8 Polarization: -44.78 SS G_CDS: -1.04 Total: -45.82 kcal Atomic # 14 Polarization: 40.77 SS G_CDS: 1.67 Total: 42.44 kcal Total: -71.77 1.41 -70.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361873568.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.916 kcal (2) G-P(sol) polarization free energy of solvation -71.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds