Wall clock time and date at job start Tue Mar 31 2020 23:13:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21251 * 120.00229 * 2 1 4 4 C 1.47182 * 119.99607 * 179.97438 * 2 1 3 5 5 C 1.39939 * 120.52222 * 0.02562 * 4 2 1 6 6 N 1.31682 * 120.84197 * 179.97438 * 5 4 2 7 7 C 1.31784 * 122.07311 * 359.74482 * 6 5 4 8 8 C 1.39674 * 120.94237 * 0.54747 * 7 6 5 9 9 C 1.47856 * 120.47974 * 179.71986 * 8 7 6 10 10 O 1.21545 * 120.00152 * 179.72489 * 9 8 7 11 11 N 1.34777 * 119.99680 * 359.72357 * 9 8 7 12 12 C 1.46506 * 120.00086 * 180.02562 * 11 9 8 13 13 C 1.50693 * 109.47167 * 179.97438 * 12 11 9 14 14 C 1.38295 * 119.93257 * 269.72258 * 13 12 11 15 15 C 1.38108 * 120.07172 * 179.72716 * 14 13 12 16 16 C 1.38878 * 119.92463 * 0.56796 * 15 14 13 17 17 O 1.35750 * 120.06766 * 179.67932 * 16 15 14 18 18 C 1.34828 * 117.00055 * 174.48832 * 17 16 15 19 19 H 1.08004 * 120.00274 * 5.06587 * 18 17 16 20 20 C 1.38655 * 120.00219 * 185.05999 * 18 17 16 21 21 N 1.31557 * 120.00281 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 119.99979 * 0.02562 * 20 18 17 23 23 H 1.48501 * 109.46973 * 89.99762 * 22 20 18 24 24 H 1.48496 * 109.47206 * 209.99866 * 22 20 18 25 25 H 1.48502 * 109.46936 * 330.00192 * 22 20 18 26 26 C 1.38883 * 119.86602 * 359.70779 * 16 15 14 27 27 C 1.38103 * 119.92674 * 0.02562 * 26 16 15 28 28 C 1.39704 * 119.04622 * 359.44896 * 8 7 6 29 29 H 1.08997 * 109.47402 * 270.00319 * 1 2 3 30 30 H 1.09006 * 109.46899 * 29.99853 * 1 2 3 31 31 H 1.08997 * 109.46833 * 150.00164 * 1 2 3 32 32 H 1.07997 * 119.57830 * 359.97355 * 5 4 2 33 33 H 1.08002 * 119.53394 * 180.29290 * 7 6 5 34 34 H 0.97003 * 120.00075 * 359.97438 * 11 9 8 35 35 H 1.08998 * 109.46601 * 300.00181 * 12 11 9 36 36 H 1.09004 * 109.46874 * 59.99389 * 12 11 9 37 37 H 1.07997 * 119.96759 * 359.97438 * 14 13 12 38 38 H 1.07998 * 120.03975 * 180.27784 * 15 14 13 39 39 H 0.97003 * 120.00292 * 180.02562 * 21 20 18 40 40 H 1.08002 * 120.03626 * 179.97438 * 26 16 15 41 41 H 1.07997 * 119.96090 * 180.02562 * 27 26 16 42 42 H 1.08000 * 120.93590 * 180.25316 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0500 0.0000 4 6 2.2429 -1.2747 0.0006 5 6 1.5542 -2.4929 0.0006 6 7 2.2061 -3.6370 0.0006 7 6 3.5228 -3.6921 -0.0044 8 6 4.2905 -2.5252 0.0015 9 6 5.7672 -2.5990 0.0021 10 8 6.4267 -1.5781 0.0022 11 7 6.3819 -3.7985 0.0025 12 6 7.8451 -3.8717 0.0036 13 6 8.2758 -5.3158 0.0045 14 6 8.4777 -5.9749 1.2034 15 6 8.8670 -7.3000 1.2076 16 6 9.0671 -7.9671 0.0061 17 8 9.4560 -9.2677 0.0069 18 6 9.5216 -9.8877 -1.1885 19 1 9.3501 -9.3290 -2.0968 20 6 9.8093 -11.2426 -1.2520 21 7 9.8738 -11.8475 -2.4185 22 14 10.1053 -12.2092 0.3188 23 1 8.8170 -12.7590 0.8119 24 1 11.0466 -13.3243 0.0440 25 1 10.6875 -11.3125 1.3495 26 6 8.8691 -7.3008 -1.1962 27 6 8.4745 -5.9773 -1.1936 28 6 3.6430 -1.2873 0.0011 29 1 -0.3634 0.0001 1.0276 30 1 -0.3633 0.8901 -0.5138 31 1 -0.3633 -0.8900 -0.5138 32 1 0.4742 -2.4947 0.0006 33 1 4.0154 -4.6532 -0.0090 34 1 5.8555 -4.6133 0.0028 35 1 8.2343 -3.3766 -0.8860 36 1 8.2330 -3.3766 0.8939 37 1 8.3269 -5.4541 2.1374 38 1 9.0201 -7.8155 2.1442 39 1 10.0747 -12.7954 -2.4629 40 1 9.0243 -7.8168 -2.1322 41 1 8.3199 -5.4588 -2.1283 42 1 4.2065 -0.3660 0.0015 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362106035.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:13:09 Heat of formation + Delta-G solvation = -35.812492 kcal Electronic energy + Delta-G solvation = -26829.863743 eV Core-core repulsion = 22740.991268 eV Total energy + Delta-G solvation = -4088.872474 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.25194 -39.86203 -39.33538 -38.86376 -37.11037 -34.75358 -33.11506 -32.94907 -32.49971 -30.61117 -30.40347 -29.70161 -26.43945 -25.39809 -24.82810 -23.74654 -22.25208 -21.85399 -20.72630 -20.11954 -18.47044 -18.03279 -17.47630 -17.44191 -16.98432 -16.35387 -15.78033 -15.76893 -15.45022 -14.97746 -14.91571 -14.74161 -14.26427 -14.06315 -13.99327 -13.90515 -13.68746 -13.46456 -13.12779 -12.95563 -12.83678 -12.77725 -12.70143 -12.32181 -12.09600 -11.55974 -11.07671 -10.90972 -10.86186 -10.82498 -10.47512 -10.27713 -10.25178 -9.90000 -9.81879 -9.53675 -9.19231 -8.99572 -8.44506 -7.54869 -6.54090 -4.21220 -0.19516 0.37396 1.75340 1.85580 1.96576 2.58325 2.98149 3.14437 3.18057 3.31749 3.36370 3.40115 3.74150 4.13040 4.15503 4.18607 4.30738 4.35285 4.53344 4.61080 4.66015 4.69617 4.84698 4.97642 4.98312 5.07054 5.26067 5.29044 5.44787 5.48845 5.54390 5.64786 5.76196 5.86059 5.97322 6.17978 6.24095 6.39546 6.61443 6.83056 6.91377 7.05524 7.12303 7.20218 7.31072 7.44082 7.65793 7.89470 7.94170 8.80188 9.40187 10.52833 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.021614 B = 0.001856 C = 0.001779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.159225 B =15080.978376 C =15736.096989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.401 3.599 3 O -0.450 6.450 4 C -0.235 4.235 5 C 0.167 3.833 6 N -0.489 5.489 7 C 0.165 3.835 8 C -0.193 4.193 9 C 0.559 3.441 10 O -0.535 6.535 11 N -0.713 5.713 12 C 0.178 3.822 13 C -0.211 4.211 14 C -0.055 4.055 15 C -0.195 4.195 16 C 0.168 3.832 17 O -0.211 6.211 18 C -0.392 4.392 19 H 0.108 0.892 20 C 0.065 3.935 21 N -0.873 5.873 22 Si 0.906 3.094 23 H -0.272 1.272 24 H -0.281 1.281 25 H -0.259 1.259 26 C -0.224 4.224 27 C -0.051 4.051 28 C 0.038 3.962 29 H 0.102 0.898 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.172 0.828 33 H 0.168 0.832 34 H 0.401 0.599 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.115 0.885 38 H 0.119 0.881 39 H 0.281 0.719 40 H 0.135 0.865 41 H 0.112 0.888 42 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.395 17.681 5.426 25.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C 0.277 3.723 3 O -0.324 6.324 4 C -0.238 4.238 5 C 0.008 3.992 6 N -0.197 5.197 7 C 0.008 3.992 8 C -0.198 4.198 9 C 0.344 3.656 10 O -0.413 6.413 11 N -0.365 5.365 12 C 0.056 3.944 13 C -0.212 4.212 14 C -0.074 4.074 15 C -0.214 4.214 16 C 0.114 3.886 17 O -0.115 6.115 18 C -0.468 4.468 19 H 0.125 0.875 20 C -0.139 4.139 21 N -0.510 5.510 22 Si 0.731 3.269 23 H -0.198 1.198 24 H -0.207 1.207 25 H -0.183 1.183 26 C -0.243 4.243 27 C -0.070 4.070 28 C 0.012 3.988 29 H 0.120 0.880 30 H 0.111 0.889 31 H 0.107 0.893 32 H 0.189 0.811 33 H 0.185 0.815 34 H 0.237 0.763 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.133 0.867 38 H 0.137 0.863 39 H 0.091 0.909 40 H 0.153 0.847 41 H 0.130 0.870 42 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -16.908 17.787 5.473 25.144 hybrid contribution 0.380 -0.409 0.343 0.656 sum -16.528 17.378 5.816 24.677 Atomic orbital electron populations 1.22253 0.92873 1.05362 1.05198 1.22359 0.91845 0.86914 0.71142 1.90591 1.72057 1.34004 1.35754 1.21605 0.94960 0.97137 1.10081 1.23467 1.00935 0.86368 0.88386 1.67787 1.09464 1.28942 1.13470 1.23369 0.89557 0.98015 0.88294 1.21092 0.95282 0.95075 1.08397 1.17950 0.86359 0.84130 0.77127 1.90803 1.66162 1.34377 1.49910 1.46269 1.08625 1.07619 1.73986 1.20070 0.78005 0.93934 1.02371 1.19236 1.13054 0.95140 0.93773 1.20540 0.96951 0.93237 0.96670 1.20219 1.10063 0.95022 0.96136 1.19194 0.91237 0.84719 0.93433 1.83575 1.74095 1.19813 1.34038 1.20789 1.49939 0.93270 0.82764 0.87458 1.24497 0.95590 0.95596 0.98247 1.69640 1.45803 1.11824 1.23764 0.86172 0.78814 0.79322 0.82562 1.19768 1.20652 1.18317 1.21288 1.08880 0.95356 0.98814 1.20708 0.95962 0.93741 0.96579 1.22043 0.93029 0.98608 0.85123 0.87992 0.88907 0.89292 0.81094 0.81500 0.76277 0.91020 0.91044 0.86718 0.86309 0.90850 0.84735 0.87041 0.82425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -0.61 9.76 36.01 0.35 -0.26 16 2 C 0.40 2.95 7.23 -30.68 -0.22 2.73 16 3 O -0.45 -5.08 17.16 5.58 0.10 -4.98 16 4 C -0.23 -1.83 5.88 -104.96 -0.62 -2.45 16 5 C 0.17 1.08 10.54 -16.98 -0.18 0.90 16 6 N -0.49 -4.19 10.33 -12.50 -0.13 -4.32 16 7 C 0.16 1.41 10.71 -17.04 -0.18 1.23 16 8 C -0.19 -1.94 5.88 -104.88 -0.62 -2.55 16 9 C 0.56 6.78 7.78 -12.32 -0.10 6.69 16 10 O -0.53 -8.34 16.41 5.33 0.09 -8.26 16 11 N -0.71 -7.80 5.50 -62.43 -0.34 -8.15 16 12 C 0.18 2.20 5.80 -5.19 -0.03 2.17 16 13 C -0.21 -3.01 5.25 -104.58 -0.55 -3.56 16 14 C -0.06 -0.82 9.69 -39.61 -0.38 -1.20 16 15 C -0.20 -3.48 9.99 -39.39 -0.39 -3.87 16 16 C 0.17 3.56 6.65 -39.11 -0.26 3.30 16 17 O -0.21 -5.25 8.59 0.06 0.00 -5.25 16 18 C -0.39 -10.51 9.95 30.89 0.31 -10.20 16 19 H 0.11 2.93 5.44 -52.48 -0.29 2.64 16 20 C 0.07 1.75 5.49 -17.52 -0.10 1.65 16 21 N -0.87 -24.27 13.96 55.48 0.77 -23.49 16 22 Si 0.91 20.75 28.62 -169.99 -4.86 15.89 16 23 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 24 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 25 H -0.26 -5.96 7.11 56.52 0.40 -5.55 16 26 C -0.22 -4.40 9.17 -39.39 -0.36 -4.76 16 27 C -0.05 -0.81 9.69 -39.61 -0.38 -1.20 16 28 C 0.04 0.38 9.25 -38.37 -0.35 0.03 16 29 H 0.10 0.17 8.14 -51.93 -0.42 -0.25 16 30 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.09 0.08 6.49 -51.93 -0.34 -0.26 16 32 H 0.17 0.46 6.36 -52.49 -0.33 0.12 16 33 H 0.17 1.10 6.40 -52.49 -0.34 0.76 16 34 H 0.40 3.67 6.52 -40.82 -0.27 3.41 16 35 H 0.07 0.91 8.08 -51.93 -0.42 0.49 16 36 H 0.07 0.88 8.08 -51.93 -0.42 0.46 16 37 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 38 H 0.12 1.99 8.06 -52.49 -0.42 1.56 16 39 H 0.28 7.21 8.31 -40.82 -0.34 6.87 16 40 H 0.14 2.81 5.64 -52.49 -0.30 2.52 16 41 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 42 H 0.16 1.75 7.40 -52.49 -0.39 1.36 16 LS Contribution 369.78 15.07 5.57 5.57 Total: -1.00 -32.58 369.78 -7.20 -39.78 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -4.33 Total: 4.56 kcal Atomic # 6 Polarization: -7.29 SS G_CDS: -4.07 Total: -11.36 kcal Atomic # 7 Polarization: -36.26 SS G_CDS: 0.30 Total: -35.96 kcal Atomic # 8 Polarization: -18.67 SS G_CDS: 0.18 Total: -18.48 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -4.86 Total: 15.89 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.58 -7.20 -39.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362106035.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.968 kcal (2) G-P(sol) polarization free energy of solvation -32.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds