Wall clock time and date at job start Tue Mar 31 2020 23:13:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21251 * 120.00229 * 2 1 4 4 C 1.47182 * 119.99607 * 179.97438 * 2 1 3 5 5 C 1.39939 * 120.52222 * 0.02562 * 4 2 1 6 6 N 1.31682 * 120.84197 * 179.97438 * 5 4 2 7 7 C 1.31784 * 122.07311 * 359.74482 * 6 5 4 8 8 C 1.39674 * 120.94237 * 0.54747 * 7 6 5 9 9 C 1.47856 * 120.47974 * 179.71986 * 8 7 6 10 10 O 1.21545 * 120.00152 * 179.72489 * 9 8 7 11 11 N 1.34777 * 119.99680 * 359.72357 * 9 8 7 12 12 C 1.46506 * 120.00086 * 180.02562 * 11 9 8 13 13 C 1.50693 * 109.47167 * 179.97438 * 12 11 9 14 14 C 1.38295 * 119.93257 * 269.72258 * 13 12 11 15 15 C 1.38108 * 120.07172 * 179.72716 * 14 13 12 16 16 C 1.38878 * 119.92463 * 0.56796 * 15 14 13 17 17 O 1.35750 * 120.06766 * 179.67932 * 16 15 14 18 18 C 1.34828 * 117.00055 * 174.48832 * 17 16 15 19 19 H 1.08004 * 120.00274 * 5.06587 * 18 17 16 20 20 C 1.38655 * 120.00219 * 185.05999 * 18 17 16 21 21 N 1.31557 * 120.00281 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 119.99979 * 0.02562 * 20 18 17 23 23 H 1.48501 * 109.46973 * 89.99762 * 22 20 18 24 24 H 1.48496 * 109.47206 * 209.99866 * 22 20 18 25 25 H 1.48502 * 109.46936 * 330.00192 * 22 20 18 26 26 C 1.38883 * 119.86602 * 359.70779 * 16 15 14 27 27 C 1.38103 * 119.92674 * 0.02562 * 26 16 15 28 28 C 1.39704 * 119.04622 * 359.44896 * 8 7 6 29 29 H 1.08997 * 109.47402 * 270.00319 * 1 2 3 30 30 H 1.09006 * 109.46899 * 29.99853 * 1 2 3 31 31 H 1.08997 * 109.46833 * 150.00164 * 1 2 3 32 32 H 1.07997 * 119.57830 * 359.97355 * 5 4 2 33 33 H 1.08002 * 119.53394 * 180.29290 * 7 6 5 34 34 H 0.97003 * 120.00075 * 359.97438 * 11 9 8 35 35 H 1.08998 * 109.46601 * 300.00181 * 12 11 9 36 36 H 1.09004 * 109.46874 * 59.99389 * 12 11 9 37 37 H 1.07997 * 119.96759 * 359.97438 * 14 13 12 38 38 H 1.07998 * 120.03975 * 180.27784 * 15 14 13 39 39 H 0.97003 * 120.00292 * 180.02562 * 21 20 18 40 40 H 1.08002 * 120.03626 * 179.97438 * 26 16 15 41 41 H 1.07997 * 119.96090 * 180.02562 * 27 26 16 42 42 H 1.08000 * 120.93590 * 180.25316 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0500 0.0000 4 6 2.2429 -1.2747 0.0006 5 6 1.5542 -2.4929 0.0006 6 7 2.2061 -3.6370 0.0006 7 6 3.5228 -3.6921 -0.0044 8 6 4.2905 -2.5252 0.0015 9 6 5.7672 -2.5990 0.0021 10 8 6.4267 -1.5781 0.0022 11 7 6.3819 -3.7985 0.0025 12 6 7.8451 -3.8717 0.0036 13 6 8.2758 -5.3158 0.0045 14 6 8.4777 -5.9749 1.2034 15 6 8.8670 -7.3000 1.2076 16 6 9.0671 -7.9671 0.0061 17 8 9.4560 -9.2677 0.0069 18 6 9.5216 -9.8877 -1.1885 19 1 9.3501 -9.3290 -2.0968 20 6 9.8093 -11.2426 -1.2520 21 7 9.8738 -11.8475 -2.4185 22 14 10.1053 -12.2092 0.3188 23 1 8.8170 -12.7590 0.8119 24 1 11.0466 -13.3243 0.0440 25 1 10.6875 -11.3125 1.3495 26 6 8.8691 -7.3008 -1.1962 27 6 8.4745 -5.9773 -1.1936 28 6 3.6430 -1.2873 0.0011 29 1 -0.3634 0.0001 1.0276 30 1 -0.3633 0.8901 -0.5138 31 1 -0.3633 -0.8900 -0.5138 32 1 0.4742 -2.4947 0.0006 33 1 4.0154 -4.6532 -0.0090 34 1 5.8555 -4.6133 0.0028 35 1 8.2343 -3.3766 -0.8860 36 1 8.2330 -3.3766 0.8939 37 1 8.3269 -5.4541 2.1374 38 1 9.0201 -7.8155 2.1442 39 1 10.0747 -12.7954 -2.4629 40 1 9.0243 -7.8168 -2.1322 41 1 8.3199 -5.4588 -2.1283 42 1 4.2065 -0.3660 0.0015 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362106035.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:13:09 Heat of formation + Delta-G solvation = -57.758914 kcal Electronic energy + Delta-G solvation = -26830.815411 eV Core-core repulsion = 22740.991268 eV Total energy + Delta-G solvation = -4089.824142 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.96931 -41.03092 -40.52445 -39.67186 -38.60513 -35.88545 -34.46362 -33.80478 -33.61481 -31.89334 -31.59245 -30.38481 -27.88721 -26.59917 -25.76106 -24.59830 -23.72182 -22.66305 -22.09680 -20.92015 -19.85193 -19.28059 -19.03123 -18.16864 -17.72872 -17.06424 -16.82897 -16.68932 -16.46247 -16.20575 -15.97845 -15.74964 -15.62034 -15.55575 -15.26601 -14.80013 -14.75286 -14.39932 -14.37399 -14.27433 -14.07214 -13.70809 -13.41818 -13.11927 -13.09528 -13.00058 -12.60938 -12.47674 -12.34835 -11.94653 -11.72671 -11.30656 -11.20278 -11.06086 -10.90178 -10.59431 -10.51765 -10.15795 -9.84118 -9.11286 -8.50664 -6.23734 -0.81421 -0.35583 0.46372 0.54274 1.15888 1.33097 1.35981 1.52548 1.75525 2.02791 2.27624 2.66709 2.75904 2.86169 3.04491 3.13089 3.18461 3.52723 3.58036 3.63100 3.78693 3.93694 4.00182 4.01610 4.13500 4.26583 4.41611 4.53436 4.62188 4.69473 4.71532 4.73932 4.79255 4.85094 4.95002 5.21171 5.21560 5.24255 5.28409 5.33118 5.53305 5.69461 5.78471 5.87881 6.18242 6.37164 6.39335 6.59064 6.83475 7.01350 7.56201 8.60400 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.021614 B = 0.001856 C = 0.001779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.159225 B =15080.978376 C =15736.096989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.403 3.597 3 O -0.500 6.500 4 C -0.239 4.239 5 C 0.186 3.814 6 N -0.503 5.503 7 C 0.173 3.827 8 C -0.206 4.206 9 C 0.563 3.437 10 O -0.575 6.575 11 N -0.704 5.704 12 C 0.182 3.818 13 C -0.176 4.176 14 C -0.043 4.043 15 C -0.192 4.192 16 C 0.130 3.870 17 O -0.242 6.242 18 C -0.399 4.399 19 H 0.083 0.917 20 C 0.011 3.989 21 N -0.921 5.921 22 Si 0.970 3.030 23 H -0.265 1.265 24 H -0.270 1.270 25 H -0.262 1.262 26 C -0.238 4.238 27 C -0.049 4.049 28 C 0.022 3.978 29 H 0.123 0.877 30 H 0.093 0.907 31 H 0.119 0.881 32 H 0.217 0.783 33 H 0.186 0.814 34 H 0.412 0.588 35 H 0.073 0.927 36 H 0.082 0.918 37 H 0.155 0.845 38 H 0.131 0.869 39 H 0.285 0.715 40 H 0.109 0.891 41 H 0.134 0.866 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.132 18.935 7.448 28.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C 0.283 3.717 3 O -0.378 6.378 4 C -0.242 4.242 5 C 0.028 3.972 6 N -0.211 5.211 7 C 0.016 3.984 8 C -0.211 4.211 9 C 0.350 3.650 10 O -0.455 6.455 11 N -0.356 5.356 12 C 0.059 3.941 13 C -0.177 4.177 14 C -0.062 4.062 15 C -0.211 4.211 16 C 0.080 3.920 17 O -0.149 6.149 18 C -0.475 4.475 19 H 0.101 0.899 20 C -0.188 4.188 21 N -0.561 5.561 22 Si 0.792 3.208 23 H -0.189 1.189 24 H -0.195 1.195 25 H -0.186 1.186 26 C -0.258 4.258 27 C -0.067 4.067 28 C -0.004 4.004 29 H 0.141 0.859 30 H 0.112 0.888 31 H 0.137 0.863 32 H 0.233 0.767 33 H 0.203 0.797 34 H 0.250 0.750 35 H 0.091 0.909 36 H 0.100 0.900 37 H 0.173 0.827 38 H 0.149 0.851 39 H 0.094 0.906 40 H 0.127 0.873 41 H 0.152 0.848 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -19.682 19.055 7.505 28.405 hybrid contribution 1.058 -0.382 -0.253 1.153 sum -18.624 18.674 7.252 27.352 Atomic orbital electron populations 1.22326 0.88882 1.06919 1.06897 1.23049 0.93824 0.85762 0.69080 1.90585 1.73387 1.35471 1.38396 1.21799 0.94035 0.98365 1.10003 1.24132 1.02715 0.84924 0.85408 1.67914 1.09268 1.29732 1.14142 1.23610 0.89766 0.98015 0.87050 1.20870 0.93973 0.95706 1.10562 1.18185 0.87160 0.83573 0.76067 1.90788 1.67170 1.35702 1.51879 1.46042 1.08036 1.07928 1.73572 1.20001 0.78899 0.92039 1.03134 1.19485 1.09484 0.95750 0.92976 1.20958 0.94793 0.91960 0.98452 1.20524 1.09136 0.96080 0.95336 1.19760 0.92869 0.84020 0.95306 1.83524 1.77217 1.21579 1.32546 1.20704 1.50097 0.93657 0.83090 0.89905 1.25285 0.95753 0.96504 1.01279 1.69727 1.48466 1.12331 1.25577 0.85224 0.79036 0.77916 0.78604 1.18947 1.19495 1.18635 1.21273 1.10017 0.96907 0.97574 1.20926 0.94996 0.92257 0.98530 1.22029 0.94378 0.97953 0.86025 0.85894 0.88827 0.86285 0.76709 0.79740 0.74978 0.90896 0.90003 0.82745 0.85080 0.90558 0.87273 0.84772 0.84645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -0.49 9.76 71.24 0.70 0.21 16 2 C 0.40 5.29 7.23 28.04 0.20 5.50 16 3 O -0.50 -11.42 17.16 -2.94 -0.05 -11.47 16 4 C -0.24 -3.28 5.88 -20.09 -0.12 -3.40 16 5 C 0.19 1.71 10.54 85.13 0.90 2.61 16 6 N -0.50 -6.92 10.33 -193.47 -2.00 -8.92 16 7 C 0.17 2.50 10.71 85.05 0.91 3.41 16 8 C -0.21 -3.85 5.88 -20.03 -0.12 -3.96 16 9 C 0.56 12.86 7.78 86.79 0.68 13.53 16 10 O -0.57 -17.66 16.41 -3.86 -0.06 -17.73 16 11 N -0.70 -13.42 5.50 -469.70 -2.58 -16.01 16 12 C 0.18 3.89 5.80 85.63 0.50 4.38 16 13 C -0.18 -4.45 5.25 -19.84 -0.10 -4.55 16 14 C -0.04 -1.12 9.69 22.25 0.22 -0.90 16 15 C -0.19 -6.47 9.99 22.39 0.22 -6.24 16 16 C 0.13 5.59 6.65 22.58 0.15 5.74 16 17 O -0.24 -12.42 8.59 -22.71 -0.20 -12.62 16 18 C -0.40 -22.56 9.95 67.92 0.68 -21.88 16 19 H 0.08 4.90 5.44 -2.91 -0.02 4.88 16 20 C 0.01 0.59 5.49 84.83 0.47 1.06 16 21 N -0.92 -53.53 13.96 21.61 0.30 -53.23 16 22 Si 0.97 43.84 28.62 68.60 1.96 45.81 16 23 H -0.26 -11.45 7.11 99.48 0.71 -10.75 16 24 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 25 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 26 C -0.24 -9.55 9.17 22.39 0.21 -9.34 16 27 C -0.05 -1.47 9.69 22.25 0.22 -1.25 16 28 C 0.02 0.44 9.25 23.06 0.21 0.65 16 29 H 0.12 -0.11 8.14 -2.39 -0.02 -0.13 16 30 H 0.09 0.30 8.14 -2.38 -0.02 0.29 16 31 H 0.12 -0.42 6.49 -2.39 -0.02 -0.43 16 32 H 0.22 -0.07 6.36 -2.91 -0.02 -0.09 16 33 H 0.19 1.84 6.40 -2.91 -0.02 1.82 16 34 H 0.41 6.16 6.52 -92.71 -0.60 5.55 16 35 H 0.07 1.63 8.08 -2.39 -0.02 1.62 16 36 H 0.08 1.69 8.08 -2.39 -0.02 1.68 16 37 H 0.15 2.90 8.06 -2.91 -0.02 2.88 16 38 H 0.13 4.09 8.06 -2.91 -0.02 4.06 16 39 H 0.28 15.21 8.31 -92.71 -0.77 14.44 16 40 H 0.11 4.91 5.64 -2.91 -0.02 4.90 16 41 H 0.13 3.46 8.06 -2.91 -0.02 3.43 16 42 H 0.14 3.23 7.40 -2.91 -0.02 3.21 16 Total: -1.00 -76.93 369.78 3.77 -73.16 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: 0.49 Total: 15.44 kcal Atomic # 6 Polarization: -20.35 SS G_CDS: 5.90 Total: -14.45 kcal Atomic # 7 Polarization: -73.87 SS G_CDS: -4.28 Total: -78.15 kcal Atomic # 8 Polarization: -41.50 SS G_CDS: -0.31 Total: -41.81 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 1.96 Total: 45.81 kcal Total: -76.93 3.77 -73.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362106035.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.401 kcal (2) G-P(sol) polarization free energy of solvation -76.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds