Wall clock time and date at job start Tue Mar 31 2020 23:41:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45208 * 1 3 3 C 1.34711 * 116.99641 * 2 1 4 4 O 1.21467 * 120.00262 * 0.02562 * 3 2 1 5 5 C 1.47719 * 119.99793 * 180.02562 * 3 2 1 6 6 C 1.40076 * 120.56676 * 179.97438 * 5 3 2 7 7 C 1.38345 * 118.28624 * 179.77208 * 6 5 3 8 8 C 1.38357 * 119.30754 * 0.47058 * 7 6 5 9 9 C 1.50697 * 119.45603 * 179.79038 * 8 7 6 10 10 N 1.46503 * 109.47010 * 94.72664 * 9 8 7 11 11 C 1.34773 * 120.00092 * 180.02562 * 10 9 8 12 12 O 1.21610 * 120.00299 * 359.97438 * 11 10 9 13 13 C 1.47429 * 119.99945 * 180.02562 * 11 10 9 14 14 C 1.39223 * 120.28350 * 354.99456 * 13 11 10 15 15 C 1.38221 * 120.09440 * 180.02562 * 14 13 11 16 16 C 1.38832 * 120.67361 * 359.96333 * 15 14 13 17 17 C 1.37598 * 120.57064 * 0.02562 * 16 15 14 18 18 C 1.40700 * 119.88365 * 0.02562 * 17 16 15 19 19 C 1.40893 * 120.33150 * 179.97438 * 18 17 16 20 20 H 1.07994 * 119.99776 * 141.30469 * 19 18 17 21 21 C 1.40274 * 119.99675 * 321.30804 * 19 18 17 22 22 N 1.30627 * 119.99379 * 174.46545 * 21 19 18 23 23 Si 1.86797 * 120.00285 * 354.47083 * 21 19 18 24 24 H 1.48498 * 109.47381 * 89.24317 * 23 21 19 25 25 H 1.48498 * 109.47077 * 209.24748 * 23 21 19 26 26 H 1.48504 * 109.46940 * 329.24270 * 23 21 19 27 27 N 1.31930 * 121.09069 * 359.51939 * 8 7 6 28 28 C 1.31687 * 121.88865 * 0.25358 * 27 8 7 29 29 H 1.08999 * 109.46650 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46508 * 299.99992 * 1 2 3 31 31 H 1.08999 * 109.46755 * 59.99700 * 1 2 3 32 32 H 1.08007 * 120.85461 * 0.02562 * 6 5 3 33 33 H 1.08003 * 120.34276 * 180.23945 * 7 6 5 34 34 H 1.09008 * 109.47218 * 334.73293 * 9 8 7 35 35 H 1.08997 * 109.47810 * 214.72941 * 9 8 7 36 36 H 0.96997 * 119.99772 * 0.02562 * 10 9 8 37 37 H 1.07999 * 119.95485 * 0.02562 * 14 13 11 38 38 H 1.07995 * 119.66532 * 179.97438 * 15 14 13 39 39 H 1.07999 * 119.71220 * 180.02562 * 16 15 14 40 40 H 1.08001 * 120.05660 * 179.72880 * 17 16 15 41 41 H 0.97005 * 119.99510 * 179.97438 * 22 21 19 42 42 H 1.07993 * 119.72190 * 180.02562 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4020 2.2190 0.0005 5 6 3.5387 1.2777 -0.0006 6 6 4.1870 2.5194 -0.0011 7 6 5.5703 2.5368 0.0032 8 6 6.2627 1.3390 -0.0020 9 6 7.7696 1.3541 -0.0021 10 7 8.2592 1.2393 1.3739 11 6 9.5844 1.2317 1.6192 12 8 10.3738 1.3197 0.6984 13 6 10.0770 1.1156 3.0039 14 6 9.1818 1.1180 4.0701 15 6 9.6480 1.0095 5.3668 16 6 11.0077 0.8963 5.6234 17 6 11.9167 0.8906 4.5905 18 6 11.4683 1.0009 3.2614 19 6 12.3909 0.9967 2.1966 20 1 12.1532 0.4804 1.2783 21 6 13.6181 1.6630 2.3293 22 7 14.5173 1.5694 1.3864 23 14 13.9665 2.6840 3.8543 24 1 14.5855 1.8242 4.8949 25 1 14.8959 3.7893 3.5083 26 1 12.6950 3.2502 4.3720 27 7 5.6255 0.1838 -0.0016 28 6 4.3105 0.1146 -0.0011 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 3.6213 3.4396 -0.0007 33 1 6.1041 3.4757 0.0068 34 1 8.1236 2.2890 -0.4368 35 1 8.1414 0.5158 -0.5912 36 1 7.6296 1.1687 2.1083 37 1 8.1216 1.2049 3.8838 38 1 8.9475 1.0126 6.1887 39 1 11.3549 0.8119 6.6426 40 1 12.9729 0.8066 4.7999 41 1 15.3659 2.0305 1.4780 42 1 3.8250 -0.8500 -0.0003 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362703596.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:41:54 Heat of formation + Delta-G solvation = -55.852202 kcal Electronic energy + Delta-G solvation = -27531.312147 eV Core-core repulsion = 23441.570686 eV Total energy + Delta-G solvation = -4089.741461 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.22043 -40.12812 -38.99999 -37.08752 -36.88586 -34.66209 -33.61173 -32.92733 -32.04879 -30.48422 -30.17674 -28.47530 -26.87572 -25.28475 -24.16933 -23.39837 -22.26744 -21.41187 -20.91217 -19.60988 -18.58078 -17.77420 -17.61420 -17.06045 -16.80890 -16.50102 -15.90766 -15.51281 -15.17565 -14.90629 -14.30015 -14.28776 -14.11334 -14.08619 -13.70141 -13.64497 -13.39101 -13.35724 -12.71103 -12.58898 -12.47826 -12.36823 -12.18841 -11.89411 -11.50444 -11.26346 -11.15322 -10.95718 -10.74192 -10.47991 -10.36830 -10.13236 -9.84536 -9.79366 -9.59675 -9.27757 -8.56825 -8.50223 -7.84698 -7.60646 -6.88268 -4.47670 0.04610 0.84316 2.06488 2.07119 2.18351 2.57844 3.08724 3.17431 3.27988 3.28675 3.76590 3.94589 3.96734 4.05764 4.26865 4.34727 4.40647 4.58281 4.60662 4.67531 4.75801 4.87928 5.08904 5.31159 5.34066 5.43394 5.55850 5.69551 5.76236 5.82550 5.88601 5.94596 6.04313 6.15259 6.34447 6.47573 6.76911 6.94222 7.08819 7.20395 7.23527 7.35793 7.53300 7.55411 7.71685 7.98375 8.22836 8.47067 8.60550 8.82306 9.27112 10.09888 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.021603 B = 0.002232 C = 0.002121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.799155 B =12543.118892 C =13199.427500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.353 6.353 3 C 0.517 3.483 4 O -0.504 6.504 5 C -0.186 4.186 6 C -0.010 4.010 7 C -0.165 4.165 8 C 0.155 3.845 9 C 0.170 3.830 10 N -0.742 5.742 11 C 0.564 3.436 12 O -0.521 6.521 13 C -0.245 4.245 14 C -0.042 4.042 15 C -0.252 4.252 16 C -0.066 4.066 17 C -0.224 4.224 18 C 0.118 3.882 19 C -0.396 4.396 20 H 0.116 0.884 21 C 0.078 3.922 22 N -0.796 5.796 23 Si 0.908 3.092 24 H -0.268 1.268 25 H -0.290 1.290 26 H -0.243 1.243 27 N -0.473 5.473 28 C 0.163 3.837 29 H 0.105 0.895 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.151 0.849 33 H 0.151 0.849 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.393 0.607 37 H 0.094 0.906 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.106 0.894 41 H 0.286 0.714 42 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.852 -0.134 -1.401 21.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.270 6.270 3 C 0.361 3.639 4 O -0.393 6.393 5 C -0.189 4.189 6 C -0.036 4.036 7 C -0.185 4.185 8 C 0.018 3.982 9 C 0.046 3.954 10 N -0.398 5.398 11 C 0.357 3.643 12 O -0.397 6.397 13 C -0.250 4.250 14 C -0.061 4.061 15 C -0.271 4.271 16 C -0.084 4.084 17 C -0.243 4.243 18 C 0.113 3.887 19 C -0.423 4.423 20 H 0.133 0.867 21 C -0.142 4.142 22 N -0.420 5.420 23 Si 0.735 3.265 24 H -0.194 1.194 25 H -0.217 1.217 26 H -0.166 1.166 27 N -0.182 5.182 28 C 0.004 3.996 29 H 0.123 0.877 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.168 0.832 33 H 0.169 0.831 34 H 0.102 0.898 35 H 0.104 0.896 36 H 0.227 0.773 37 H 0.112 0.888 38 H 0.115 0.885 39 H 0.115 0.885 40 H 0.124 0.876 41 H 0.097 0.903 42 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -20.721 -0.504 -2.277 20.852 hybrid contribution -0.916 1.245 1.006 1.845 sum -21.638 0.741 -1.271 21.688 Atomic orbital electron populations 1.23331 0.75459 1.04069 1.02777 1.86540 1.23959 1.32280 1.84190 1.20933 0.88634 0.81642 0.72662 1.90848 1.66666 1.36027 1.45748 1.20159 0.90426 0.96381 1.11980 1.21742 0.94312 0.97350 0.90154 1.22101 0.93979 1.00267 1.02166 1.21796 0.97236 0.88340 0.90861 1.20048 0.85016 1.03834 0.86542 1.45930 1.07912 1.79313 1.06652 1.18356 0.80287 0.75847 0.89845 1.90785 1.54093 1.48856 1.46013 1.19396 0.94470 1.20648 0.90501 1.20776 0.96565 0.95768 0.92975 1.20301 0.94913 1.16472 0.95407 1.20752 0.93560 0.96850 0.97256 1.21193 0.98246 1.11567 0.93327 1.17561 0.91142 0.87821 0.92163 1.19950 0.95874 1.24862 1.01624 0.86685 1.26308 0.94379 0.96054 0.97437 1.69548 1.05653 1.34105 1.32699 0.86391 0.79772 0.79322 0.81043 1.19436 1.21708 1.16634 1.67711 1.09620 1.28652 1.12235 1.23271 0.88883 0.98033 0.89450 0.87670 0.91639 0.91682 0.83156 0.83087 0.89790 0.89597 0.77312 0.88797 0.88499 0.88503 0.87644 0.90293 0.81011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.20 10.56 101.05 1.07 1.27 16 2 O -0.35 -2.96 9.85 -40.52 -0.40 -3.36 16 3 C 0.52 5.20 7.91 34.60 0.27 5.48 16 4 O -0.50 -6.13 16.21 -19.24 -0.31 -6.44 16 5 C -0.19 -1.81 5.89 -104.83 -0.62 -2.43 16 6 C -0.01 -0.09 9.72 -38.85 -0.38 -0.47 16 7 C -0.16 -1.58 9.70 -39.50 -0.38 -1.96 16 8 C 0.15 1.83 6.15 -82.51 -0.51 1.32 16 9 C 0.17 2.42 5.97 -5.19 -0.03 2.39 16 10 N -0.74 -12.40 5.50 -62.56 -0.34 -12.74 16 11 C 0.56 12.43 7.72 -12.52 -0.10 12.34 16 12 O -0.52 -13.47 13.67 5.27 0.07 -13.40 16 13 C -0.25 -5.64 5.92 -104.37 -0.62 -6.26 16 14 C -0.04 -0.82 9.52 -39.22 -0.37 -1.20 16 15 C -0.25 -4.87 10.03 -39.37 -0.39 -5.26 16 16 C -0.07 -1.34 10.01 -39.60 -0.40 -1.74 16 17 C -0.22 -5.23 6.95 -38.89 -0.27 -5.50 16 18 C 0.12 2.99 5.04 -106.54 -0.54 2.46 16 19 C -0.40 -10.98 8.08 -37.81 -0.31 -11.29 16 20 H 0.12 3.53 6.36 -52.49 -0.33 3.19 16 21 C 0.08 2.07 5.51 -17.30 -0.10 1.98 16 22 N -0.80 -21.60 13.92 55.56 0.77 -20.83 16 23 Si 0.91 20.63 24.49 -169.99 -4.16 16.47 16 24 H -0.27 -5.79 6.70 56.52 0.38 -5.41 16 25 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 26 H -0.24 -5.64 6.68 56.52 0.38 -5.26 16 27 N -0.47 -5.77 10.25 -9.12 -0.09 -5.86 16 28 C 0.16 1.62 10.79 -17.11 -0.18 1.43 16 29 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.15 1.18 7.74 -52.48 -0.41 0.77 16 33 H 0.15 1.17 8.06 -52.48 -0.42 0.75 16 34 H 0.08 1.14 8.04 -51.92 -0.42 0.72 16 35 H 0.09 1.34 8.14 -51.93 -0.42 0.91 16 36 H 0.39 5.79 6.52 -40.82 -0.27 5.53 16 37 H 0.09 1.51 6.43 -52.49 -0.34 1.17 16 38 H 0.10 1.60 8.06 -52.49 -0.42 1.17 16 39 H 0.10 1.69 8.06 -52.49 -0.42 1.27 16 40 H 0.11 2.42 4.88 -52.49 -0.26 2.16 16 41 H 0.29 6.99 8.29 -40.82 -0.34 6.65 16 42 H 0.17 1.33 7.62 -52.49 -0.40 0.93 16 LS Contribution 362.44 15.07 5.46 5.46 Total: -1.00 -32.42 362.44 -7.41 -39.83 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: -4.56 Total: 8.31 kcal Atomic # 6 Polarization: -3.59 SS G_CDS: -3.85 Total: -7.44 kcal Atomic # 7 Polarization: -39.77 SS G_CDS: 0.34 Total: -39.43 kcal Atomic # 8 Polarization: -22.56 SS G_CDS: -0.64 Total: -23.20 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -4.16 Total: 16.47 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.42 -7.41 -39.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362703596.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.026 kcal (2) G-P(sol) polarization free energy of solvation -32.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds