Wall clock time and date at job start Tue Mar 31 2020 23:41:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45208 * 1 3 3 C 1.34711 * 116.99641 * 2 1 4 4 O 1.21467 * 120.00262 * 0.02562 * 3 2 1 5 5 C 1.47719 * 119.99793 * 180.02562 * 3 2 1 6 6 C 1.40076 * 120.56676 * 179.97438 * 5 3 2 7 7 C 1.38345 * 118.28624 * 179.77208 * 6 5 3 8 8 C 1.38357 * 119.30754 * 0.47058 * 7 6 5 9 9 C 1.50697 * 119.45603 * 179.79038 * 8 7 6 10 10 N 1.46503 * 109.47010 * 94.72664 * 9 8 7 11 11 C 1.34773 * 120.00092 * 180.02562 * 10 9 8 12 12 O 1.21610 * 120.00299 * 359.97438 * 11 10 9 13 13 C 1.47429 * 119.99945 * 180.02562 * 11 10 9 14 14 C 1.39223 * 120.28350 * 354.99456 * 13 11 10 15 15 C 1.38221 * 120.09440 * 180.02562 * 14 13 11 16 16 C 1.38832 * 120.67361 * 359.96333 * 15 14 13 17 17 C 1.37598 * 120.57064 * 0.02562 * 16 15 14 18 18 C 1.40700 * 119.88365 * 0.02562 * 17 16 15 19 19 C 1.40893 * 120.33150 * 179.97438 * 18 17 16 20 20 H 1.07994 * 119.99776 * 141.30469 * 19 18 17 21 21 C 1.40274 * 119.99675 * 321.30804 * 19 18 17 22 22 N 1.30627 * 119.99379 * 174.46545 * 21 19 18 23 23 Si 1.86797 * 120.00285 * 354.47083 * 21 19 18 24 24 H 1.48498 * 109.47381 * 89.24317 * 23 21 19 25 25 H 1.48498 * 109.47077 * 209.24748 * 23 21 19 26 26 H 1.48504 * 109.46940 * 329.24270 * 23 21 19 27 27 N 1.31930 * 121.09069 * 359.51939 * 8 7 6 28 28 C 1.31687 * 121.88865 * 0.25358 * 27 8 7 29 29 H 1.08999 * 109.46650 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46508 * 299.99992 * 1 2 3 31 31 H 1.08999 * 109.46755 * 59.99700 * 1 2 3 32 32 H 1.08007 * 120.85461 * 0.02562 * 6 5 3 33 33 H 1.08003 * 120.34276 * 180.23945 * 7 6 5 34 34 H 1.09008 * 109.47218 * 334.73293 * 9 8 7 35 35 H 1.08997 * 109.47810 * 214.72941 * 9 8 7 36 36 H 0.96997 * 119.99772 * 0.02562 * 10 9 8 37 37 H 1.07999 * 119.95485 * 0.02562 * 14 13 11 38 38 H 1.07995 * 119.66532 * 179.97438 * 15 14 13 39 39 H 1.07999 * 119.71220 * 180.02562 * 16 15 14 40 40 H 1.08001 * 120.05660 * 179.72880 * 17 16 15 41 41 H 0.97005 * 119.99510 * 179.97438 * 22 21 19 42 42 H 1.07993 * 119.72190 * 180.02562 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4020 2.2190 0.0005 5 6 3.5387 1.2777 -0.0006 6 6 4.1870 2.5194 -0.0011 7 6 5.5703 2.5368 0.0032 8 6 6.2627 1.3390 -0.0020 9 6 7.7696 1.3541 -0.0021 10 7 8.2592 1.2393 1.3739 11 6 9.5844 1.2317 1.6192 12 8 10.3738 1.3197 0.6984 13 6 10.0770 1.1156 3.0039 14 6 9.1818 1.1180 4.0701 15 6 9.6480 1.0095 5.3668 16 6 11.0077 0.8963 5.6234 17 6 11.9167 0.8906 4.5905 18 6 11.4683 1.0009 3.2614 19 6 12.3909 0.9967 2.1966 20 1 12.1532 0.4804 1.2783 21 6 13.6181 1.6630 2.3293 22 7 14.5173 1.5694 1.3864 23 14 13.9665 2.6840 3.8543 24 1 14.5855 1.8242 4.8949 25 1 14.8959 3.7893 3.5083 26 1 12.6950 3.2502 4.3720 27 7 5.6255 0.1838 -0.0016 28 6 4.3105 0.1146 -0.0011 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 3.6213 3.4396 -0.0007 33 1 6.1041 3.4757 0.0068 34 1 8.1236 2.2890 -0.4368 35 1 8.1414 0.5158 -0.5912 36 1 7.6296 1.1687 2.1083 37 1 8.1216 1.2049 3.8838 38 1 8.9475 1.0126 6.1887 39 1 11.3549 0.8119 6.6426 40 1 12.9729 0.8066 4.7999 41 1 15.3659 2.0305 1.4780 42 1 3.8250 -0.8500 -0.0003 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362703596.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:41:53 Heat of formation + Delta-G solvation = -77.940182 kcal Electronic energy + Delta-G solvation = -27532.269954 eV Core-core repulsion = 23441.570686 eV Total energy + Delta-G solvation = -4090.699268 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.01548 -41.06309 -40.55963 -38.76721 -37.62818 -36.12332 -35.39736 -33.79531 -33.17284 -32.28342 -31.69887 -29.25855 -27.88480 -26.98717 -25.00618 -24.46636 -23.77420 -22.73847 -22.10690 -21.24075 -19.50628 -19.30535 -18.66642 -18.37722 -17.49233 -17.33909 -17.19999 -17.15220 -16.50169 -15.91566 -15.77790 -15.72964 -15.48294 -15.38540 -14.94288 -14.53594 -14.41365 -14.31867 -14.25012 -13.97916 -13.94433 -13.57129 -13.22227 -13.15149 -13.05847 -12.67500 -12.52849 -12.19281 -11.97799 -11.92586 -11.86099 -11.59130 -11.16409 -11.07878 -10.69859 -10.55926 -10.21714 -10.05982 -9.52025 -9.39559 -8.77970 -6.45440 -0.77693 0.08672 0.34227 0.84064 1.25980 1.26199 1.38849 1.48115 1.54181 2.12507 2.24500 2.27996 2.72726 2.75104 2.97559 3.47909 3.53620 3.55288 3.69075 3.87252 3.99382 4.21228 4.25046 4.29529 4.34745 4.42427 4.46597 4.61833 4.64703 4.71315 4.74551 4.84345 4.85148 4.91553 5.01428 5.19780 5.32233 5.35163 5.45236 5.51073 5.68027 5.86138 5.95581 6.26493 6.47098 6.50599 6.63819 6.71221 6.79219 6.86640 7.59031 8.27504 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.021603 B = 0.002232 C = 0.002121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.799155 B =12543.118892 C =13199.427500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.354 6.354 3 C 0.521 3.479 4 O -0.528 6.528 5 C -0.184 4.184 6 C -0.005 4.005 7 C -0.153 4.153 8 C 0.143 3.857 9 C 0.172 3.828 10 N -0.719 5.719 11 C 0.559 3.441 12 O -0.570 6.570 13 C -0.260 4.260 14 C -0.041 4.041 15 C -0.227 4.227 16 C -0.062 4.062 17 C -0.244 4.244 18 C 0.100 3.900 19 C -0.441 4.441 20 H 0.063 0.937 21 C 0.033 3.967 22 N -0.854 5.854 23 Si 0.969 3.031 24 H -0.248 1.248 25 H -0.282 1.282 26 H -0.248 1.248 27 N -0.498 5.498 28 C 0.164 3.836 29 H 0.135 0.865 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.167 0.833 33 H 0.171 0.829 34 H 0.089 0.911 35 H 0.066 0.934 36 H 0.406 0.594 37 H 0.136 0.864 38 H 0.144 0.856 39 H 0.137 0.863 40 H 0.104 0.896 41 H 0.292 0.708 42 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.604 0.453 1.926 25.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.270 6.270 3 C 0.366 3.634 4 O -0.419 6.419 5 C -0.188 4.188 6 C -0.030 4.030 7 C -0.173 4.173 8 C 0.007 3.993 9 C 0.048 3.952 10 N -0.375 5.375 11 C 0.351 3.649 12 O -0.450 6.450 13 C -0.265 4.265 14 C -0.059 4.059 15 C -0.246 4.246 16 C -0.080 4.080 17 C -0.263 4.263 18 C 0.096 3.904 19 C -0.471 4.471 20 H 0.081 0.919 21 C -0.180 4.180 22 N -0.481 5.481 23 Si 0.792 3.208 24 H -0.173 1.173 25 H -0.209 1.209 26 H -0.172 1.172 27 N -0.207 5.207 28 C 0.005 3.995 29 H 0.153 0.847 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.185 0.815 33 H 0.188 0.812 34 H 0.108 0.892 35 H 0.084 0.916 36 H 0.242 0.758 37 H 0.154 0.846 38 H 0.162 0.838 39 H 0.155 0.845 40 H 0.121 0.879 41 H 0.102 0.898 42 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -24.535 0.053 1.069 24.558 hybrid contribution -0.219 0.945 0.065 0.972 sum -24.754 0.998 1.135 24.800 Atomic orbital electron populations 1.23640 0.73767 1.06101 1.02848 1.86536 1.25608 1.31277 1.83596 1.20937 0.88615 0.81786 0.72042 1.90841 1.67137 1.36854 1.47039 1.20268 0.90516 0.96633 1.11344 1.21951 0.94095 0.97868 0.89120 1.22203 0.94157 1.00066 1.00922 1.21383 0.95519 0.89350 0.93057 1.20047 0.87212 1.03306 0.84684 1.45631 1.06259 1.77193 1.08372 1.18472 0.81613 0.75469 0.89350 1.90785 1.55896 1.51011 1.47307 1.19798 0.94485 1.20086 0.92159 1.21204 0.98191 0.94310 0.92237 1.20955 0.95274 1.11945 0.96418 1.21263 0.93737 0.94641 0.98385 1.21295 0.99110 1.12805 0.93114 1.17825 0.92030 0.87797 0.92741 1.19688 0.98162 1.28293 1.00926 0.91939 1.27060 0.93866 0.96786 1.00306 1.69614 1.06656 1.36893 1.34953 0.85480 0.79341 0.78091 0.77914 1.17299 1.20928 1.17183 1.67627 1.10809 1.29136 1.13139 1.23512 0.88020 0.99025 0.88900 0.84728 0.91606 0.91623 0.81541 0.81183 0.89242 0.91596 0.75751 0.84596 0.83819 0.84485 0.87867 0.89791 0.79137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.56 113.37 1.20 1.45 16 2 O -0.35 -5.10 9.85 -56.21 -0.55 -5.65 16 3 C 0.52 9.37 7.91 70.33 0.56 9.92 16 4 O -0.53 -11.83 16.21 19.94 0.32 -11.50 16 5 C -0.18 -3.17 5.89 -20.00 -0.12 -3.29 16 6 C 0.00 -0.08 9.72 22.74 0.22 0.15 16 7 C -0.15 -2.58 9.70 22.32 0.22 -2.36 16 8 C 0.14 3.20 6.15 42.57 0.26 3.46 16 9 C 0.17 4.92 5.97 85.63 0.51 5.43 16 10 N -0.72 -23.64 5.50 -470.09 -2.58 -26.22 16 11 C 0.56 25.30 7.72 86.67 0.67 25.97 16 12 O -0.57 -31.67 13.67 -4.06 -0.06 -31.73 16 13 C -0.26 -11.88 5.92 -19.70 -0.12 -12.00 16 14 C -0.04 -1.44 9.52 22.50 0.21 -1.22 16 15 C -0.23 -7.44 10.03 22.41 0.22 -7.21 16 16 C -0.06 -2.25 10.01 22.26 0.22 -2.03 16 17 C -0.24 -11.05 6.95 22.72 0.16 -10.90 16 18 C 0.10 5.19 5.04 -21.11 -0.11 5.09 16 19 C -0.44 -26.39 8.08 23.42 0.19 -26.20 16 20 H 0.06 4.27 6.36 -2.91 -0.02 4.25 16 21 C 0.03 1.85 5.51 85.37 0.47 2.32 16 22 N -0.85 -50.10 13.92 21.88 0.30 -49.80 16 23 Si 0.97 43.68 24.49 68.60 1.68 45.36 16 24 H -0.25 -10.20 6.70 99.48 0.67 -9.53 16 25 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 26 H -0.25 -11.17 6.68 99.48 0.66 -10.51 16 27 N -0.50 -11.47 10.25 -182.78 -1.87 -13.35 16 28 C 0.16 2.94 10.79 85.04 0.92 3.85 16 29 H 0.13 0.34 8.14 -2.39 -0.02 0.32 16 30 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.17 2.11 7.74 -2.91 -0.02 2.09 16 33 H 0.17 2.17 8.06 -2.91 -0.02 2.14 16 34 H 0.09 2.47 8.04 -2.38 -0.02 2.46 16 35 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 36 H 0.41 10.98 6.52 -92.71 -0.60 10.38 16 37 H 0.14 3.61 6.43 -2.91 -0.02 3.59 16 38 H 0.14 3.52 8.06 -2.91 -0.02 3.50 16 39 H 0.14 3.92 8.06 -2.91 -0.02 3.90 16 40 H 0.10 4.65 4.88 -2.91 -0.01 4.64 16 41 H 0.29 15.32 8.29 -92.70 -0.77 14.55 16 42 H 0.19 2.52 7.62 -2.91 -0.02 2.50 16 Total: -1.00 -77.68 362.44 3.33 -74.35 By element: Atomic # 1 Polarization: 25.70 SS G_CDS: 0.40 Total: 26.10 kcal Atomic # 6 Polarization: -13.25 SS G_CDS: 5.69 Total: -7.56 kcal Atomic # 7 Polarization: -85.21 SS G_CDS: -4.15 Total: -89.37 kcal Atomic # 8 Polarization: -48.60 SS G_CDS: -0.29 Total: -48.88 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 1.68 Total: 45.36 kcal Total: -77.68 3.33 -74.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362703596.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.595 kcal (2) G-P(sol) polarization free energy of solvation -77.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds