Wall clock time and date at job start Tue Mar 31 2020 23:13:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21254 * 119.99823 * 2 1 4 4 C 1.47173 * 119.99995 * 179.97438 * 2 1 3 5 5 C 1.39943 * 120.52085 * 0.03084 * 4 2 1 6 6 N 1.31684 * 120.84005 * 179.97438 * 5 4 2 7 7 C 1.31783 * 122.07199 * 359.71903 * 6 5 4 8 8 C 1.39672 * 120.94732 * 0.54513 * 7 6 5 9 9 C 1.47858 * 120.47906 * 179.74985 * 8 7 6 10 10 O 1.21544 * 119.99925 * 179.71854 * 9 8 7 11 11 N 1.34774 * 119.99673 * 359.72111 * 9 8 7 12 12 C 1.46506 * 119.99494 * 180.02562 * 11 9 8 13 13 C 1.50699 * 109.46983 * 179.97438 * 12 11 9 14 14 C 1.38328 * 119.96224 * 270.02054 * 13 12 11 15 15 C 1.38280 * 120.13484 * 180.02562 * 14 13 12 16 16 C 1.38120 * 120.07150 * 359.67534 * 15 14 13 17 17 C 1.38861 * 119.92830 * 0.59673 * 16 15 14 18 18 O 1.35751 * 120.06597 * 179.69892 * 17 16 15 19 19 C 1.34829 * 117.00376 * 354.17384 * 18 17 16 20 20 H 1.07998 * 119.99999 * 5.03596 * 19 18 17 21 21 C 1.38657 * 120.00083 * 185.03464 * 19 18 17 22 22 N 1.31555 * 119.99797 * 179.97438 * 21 19 18 23 23 Si 1.86799 * 119.99748 * 0.02562 * 21 19 18 24 24 H 1.48496 * 109.47410 * 90.00109 * 23 21 19 25 25 H 1.48504 * 109.46801 * 209.99865 * 23 21 19 26 26 H 1.48497 * 109.47495 * 329.99577 * 23 21 19 27 27 C 1.38073 * 119.96952 * 89.99494 * 13 12 11 28 28 C 1.39704 * 119.04167 * 359.47200 * 8 7 6 29 29 H 1.09000 * 109.47250 * 269.99864 * 1 2 3 30 30 H 1.09001 * 109.47313 * 30.00223 * 1 2 3 31 31 H 1.08997 * 109.46872 * 149.99698 * 1 2 3 32 32 H 1.07993 * 119.57951 * 359.97438 * 5 4 2 33 33 H 1.08001 * 119.52781 * 180.29286 * 7 6 5 34 34 H 0.96994 * 120.00750 * 359.97438 * 11 9 8 35 35 H 1.08996 * 109.47397 * 59.99565 * 12 11 9 36 36 H 1.08997 * 109.47015 * 299.99408 * 12 11 9 37 37 H 1.08001 * 119.93314 * 359.97438 * 14 13 12 38 38 H 1.08007 * 119.96121 * 179.97438 * 15 14 13 39 39 H 1.08001 * 120.03709 * 180.32387 * 16 15 14 40 40 H 0.96998 * 119.99749 * 179.97438 * 22 21 19 41 41 H 1.08001 * 120.03594 * 0.04940 * 27 13 12 42 42 H 1.08004 * 120.92992 * 180.23310 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0501 0.0000 4 6 2.2429 -1.2746 0.0006 5 6 1.5542 -2.4928 0.0005 6 7 2.2063 -3.6369 0.0005 7 6 3.5229 -3.6919 -0.0049 8 6 4.2906 -2.5250 0.0005 9 6 5.7673 -2.5988 -0.0001 10 8 6.4268 -1.5779 -0.0005 11 7 6.3820 -3.7982 -0.0001 12 6 7.8453 -3.8713 -0.0001 13 6 8.2761 -5.3154 0.0004 14 6 8.4731 -5.9771 1.1991 15 6 8.8689 -7.3020 1.2038 16 6 9.0622 -7.9708 0.0108 17 6 8.8707 -7.3077 -1.1941 18 8 9.0658 -7.9606 -2.3682 19 6 9.5607 -9.2127 -2.2975 20 1 9.7066 -9.6822 -1.3359 21 6 9.8824 -9.8977 -3.4593 22 7 10.3658 -11.1193 -3.3902 23 14 9.6308 -9.0854 -5.1225 24 1 10.8642 -8.3537 -5.5077 25 1 9.3332 -10.1245 -6.1409 26 1 8.4949 -8.1324 -5.0412 27 6 8.4731 -5.9768 -1.1954 28 6 3.6430 -1.2872 0.0005 29 1 -0.3634 0.0000 1.0277 30 1 -0.3634 0.8900 -0.5139 31 1 -0.3633 -0.8899 -0.5139 32 1 0.4743 -2.4947 0.0004 33 1 4.0155 -4.6530 -0.0095 34 1 5.8558 -4.6130 0.0006 35 1 8.2338 -3.3763 0.8898 36 1 8.2338 -3.3763 -0.8901 37 1 8.3184 -5.4576 2.1332 38 1 9.0224 -7.8158 2.1413 39 1 9.3663 -9.0071 0.0152 40 1 10.5905 -11.5986 -4.2030 41 1 8.3195 -5.4596 -2.1310 42 1 4.2065 -0.3658 0.0008 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001411286676.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:13:13 Heat of formation + Delta-G solvation = -34.825359 kcal Electronic energy + Delta-G solvation = -26999.666085 eV Core-core repulsion = 22910.836417 eV Total energy + Delta-G solvation = -4088.829669 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.26184 -39.88838 -39.33219 -38.86635 -37.06447 -34.85531 -33.12020 -32.97304 -32.48576 -31.04820 -30.01006 -29.43245 -26.47203 -25.38578 -25.09065 -23.93144 -21.99121 -21.81800 -20.83306 -20.15506 -18.54267 -17.83753 -17.48199 -17.39059 -16.80983 -16.23685 -15.81502 -15.78679 -15.52219 -15.29152 -14.97089 -14.86824 -14.30496 -14.13009 -13.94706 -13.88876 -13.68491 -13.49111 -13.14850 -12.84014 -12.82510 -12.70225 -12.64646 -12.25717 -12.13111 -11.54299 -11.03167 -10.97521 -10.86577 -10.82465 -10.47951 -10.29828 -10.23974 -9.91286 -9.82460 -9.51877 -9.24416 -8.97455 -8.41976 -7.54994 -6.50695 -4.18253 -0.19901 0.36835 1.70450 1.75193 2.07878 2.56707 2.95466 3.16251 3.20381 3.33636 3.35468 3.39508 3.73610 4.14930 4.15731 4.17955 4.30326 4.34640 4.52657 4.56601 4.60329 4.67412 4.84736 4.96312 5.00523 5.04714 5.28212 5.33302 5.44431 5.53493 5.55067 5.67274 5.73816 5.85327 5.94364 6.07790 6.18286 6.34474 6.60144 6.91453 6.91965 7.03134 7.13878 7.19337 7.25228 7.43685 7.67728 7.90601 7.92511 8.83938 9.44153 10.56543 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.016009 B = 0.002074 C = 0.001974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1748.552695 B =13498.818039 C =14177.728029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.401 3.599 3 O -0.449 6.449 4 C -0.235 4.235 5 C 0.167 3.833 6 N -0.489 5.489 7 C 0.165 3.835 8 C -0.193 4.193 9 C 0.561 3.439 10 O -0.533 6.533 11 N -0.713 5.713 12 C 0.168 3.832 13 C -0.078 4.078 14 C -0.186 4.186 15 C -0.077 4.077 16 C -0.211 4.211 17 C 0.156 3.844 18 O -0.214 6.214 19 C -0.392 4.392 20 H 0.107 0.893 21 C 0.064 3.936 22 N -0.876 5.876 23 Si 0.906 3.094 24 H -0.273 1.273 25 H -0.281 1.281 26 H -0.260 1.260 27 C -0.171 4.171 28 C 0.039 3.961 29 H 0.102 0.898 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.172 0.828 33 H 0.168 0.832 34 H 0.403 0.597 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.110 0.890 38 H 0.113 0.887 39 H 0.135 0.865 40 H 0.281 0.719 41 H 0.119 0.881 42 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.346 16.119 8.323 25.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C 0.277 3.723 3 O -0.324 6.324 4 C -0.238 4.238 5 C 0.009 3.991 6 N -0.196 5.196 7 C 0.008 3.992 8 C -0.198 4.198 9 C 0.347 3.653 10 O -0.410 6.410 11 N -0.364 5.364 12 C 0.046 3.954 13 C -0.079 4.079 14 C -0.206 4.206 15 C -0.095 4.095 16 C -0.230 4.230 17 C 0.104 3.896 18 O -0.119 6.119 19 C -0.467 4.467 20 H 0.124 0.876 21 C -0.139 4.139 22 N -0.513 5.513 23 Si 0.731 3.269 24 H -0.198 1.198 25 H -0.207 1.207 26 H -0.184 1.184 27 C -0.191 4.191 28 C 0.013 3.987 29 H 0.120 0.880 30 H 0.111 0.889 31 H 0.107 0.893 32 H 0.189 0.811 33 H 0.185 0.815 34 H 0.239 0.761 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.128 0.872 38 H 0.131 0.869 39 H 0.152 0.848 40 H 0.091 0.909 41 H 0.137 0.863 42 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -17.933 16.476 7.947 25.617 hybrid contribution 0.299 0.142 -0.655 0.733 sum -17.634 16.618 7.292 25.304 Atomic orbital electron populations 1.22252 0.92866 1.05371 1.05189 1.22355 0.91847 0.86909 0.71153 1.90592 1.72061 1.33993 1.35736 1.21603 0.94945 0.97150 1.10074 1.23473 1.00943 0.86364 0.88327 1.67789 1.09435 1.28945 1.13480 1.23367 0.89574 0.98001 0.88248 1.21053 0.95125 0.95119 1.08527 1.17915 0.86414 0.83972 0.77041 1.90809 1.66142 1.34306 1.49751 1.46055 1.08242 1.07843 1.74273 1.20224 0.78456 0.93701 1.03043 1.19226 1.01725 0.93822 0.93119 1.20557 1.08252 0.95369 0.96382 1.20814 0.97371 0.94142 0.97177 1.21381 1.07941 1.01833 0.91853 1.19058 0.93590 0.91010 0.85985 1.83574 1.72784 1.29067 1.26502 1.20757 1.42168 0.86851 0.96938 0.87562 1.24477 0.95201 0.95069 0.99196 1.69640 1.40957 1.10423 1.30296 0.86179 0.79840 0.79273 0.81603 1.19818 1.20706 1.18364 1.20083 1.08757 0.92651 0.97574 1.22043 0.93044 0.98590 0.85066 0.87991 0.88901 0.89298 0.81073 0.81501 0.76132 0.90415 0.90414 0.87225 0.86906 0.84781 0.90925 0.86333 0.82391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -0.62 9.76 36.01 0.35 -0.27 16 2 C 0.40 2.98 7.23 -30.68 -0.22 2.75 16 3 O -0.45 -5.11 17.16 5.58 0.10 -5.01 16 4 C -0.23 -1.85 5.88 -104.97 -0.62 -2.47 16 5 C 0.17 1.09 10.54 -16.98 -0.18 0.91 16 6 N -0.49 -4.22 10.33 -12.50 -0.13 -4.35 16 7 C 0.17 1.43 10.71 -17.04 -0.18 1.25 16 8 C -0.19 -1.96 5.88 -104.88 -0.62 -2.57 16 9 C 0.56 6.90 7.78 -12.33 -0.10 6.80 16 10 O -0.53 -8.36 16.41 5.33 0.09 -8.28 16 11 N -0.71 -7.98 5.50 -62.43 -0.34 -8.32 16 12 C 0.17 2.13 5.80 -5.19 -0.03 2.10 16 13 C -0.08 -1.16 5.25 -104.65 -0.55 -1.71 16 14 C -0.19 -2.72 9.70 -39.53 -0.38 -3.10 16 15 C -0.08 -1.24 10.04 -39.61 -0.40 -1.64 16 16 C -0.21 -4.17 9.17 -39.39 -0.36 -4.53 16 17 C 0.16 3.32 6.65 -39.11 -0.26 3.06 16 18 O -0.21 -5.36 8.59 0.05 0.00 -5.36 16 19 C -0.39 -10.57 9.95 30.89 0.31 -10.26 16 20 H 0.11 2.92 5.44 -52.49 -0.29 2.63 16 21 C 0.06 1.75 5.49 -17.52 -0.10 1.65 16 22 N -0.88 -24.54 13.96 55.48 0.77 -23.76 16 23 Si 0.91 21.02 28.62 -169.99 -4.86 16.15 16 24 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 25 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 26 H -0.26 -6.02 7.11 56.52 0.40 -5.62 16 27 C -0.17 -3.04 9.65 -39.40 -0.38 -3.42 16 28 C 0.04 0.39 9.25 -38.37 -0.35 0.03 16 29 H 0.10 0.17 8.14 -51.93 -0.42 -0.25 16 30 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.09 0.08 6.49 -51.93 -0.34 -0.25 16 32 H 0.17 0.46 6.36 -52.49 -0.33 0.13 16 33 H 0.17 1.12 6.40 -52.49 -0.34 0.78 16 34 H 0.40 3.77 6.52 -40.82 -0.27 3.51 16 35 H 0.08 0.96 8.08 -51.93 -0.42 0.54 16 36 H 0.08 1.03 8.08 -51.93 -0.42 0.61 16 37 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 38 H 0.11 1.54 8.06 -52.48 -0.42 1.12 16 39 H 0.13 2.82 5.64 -52.49 -0.30 2.52 16 40 H 0.28 7.27 8.31 -40.82 -0.34 6.93 16 41 H 0.12 2.02 8.06 -52.49 -0.42 1.60 16 42 H 0.16 1.77 7.40 -52.48 -0.39 1.38 16 LS Contribution 369.78 15.07 5.57 5.57 Total: -1.00 -32.90 369.78 -7.20 -40.11 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -4.33 Total: 4.64 kcal Atomic # 6 Polarization: -7.33 SS G_CDS: -4.07 Total: -11.40 kcal Atomic # 7 Polarization: -36.73 SS G_CDS: 0.30 Total: -36.43 kcal Atomic # 8 Polarization: -18.83 SS G_CDS: 0.18 Total: -18.65 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -4.86 Total: 16.15 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.90 -7.20 -40.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001411286676.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.284 kcal (2) G-P(sol) polarization free energy of solvation -32.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds