Wall clock time and date at job start Tue Mar 31 2020 23:43:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34226 * 116.99836 * 2 1 4 4 O 1.20824 * 120.00157 * 359.97438 * 3 2 1 5 5 C 1.50705 * 120.00055 * 180.02562 * 3 2 1 6 6 H 1.09001 * 109.46685 * 299.99964 * 5 3 2 7 7 N 1.46492 * 109.47455 * 179.97438 * 5 3 2 8 8 C 1.34773 * 120.00274 * 85.00036 * 7 5 3 9 9 O 1.21585 * 120.00075 * 359.97438 * 8 7 5 10 10 C 1.47640 * 120.00506 * 180.02562 * 8 7 5 11 11 C 1.40021 * 119.89096 * 359.72137 * 10 8 7 12 12 C 1.36322 * 120.10219 * 179.76161 * 11 10 8 13 13 C 1.40882 * 119.89061 * 0.51381 * 12 11 10 14 14 C 1.41115 * 120.10008 * 179.71640 * 13 12 11 15 15 H 1.07999 * 119.99588 * 155.08578 * 14 13 12 16 16 C 1.40224 * 120.00028 * 335.08441 * 14 13 12 17 17 N 1.30645 * 120.00060 * 342.20870 * 16 14 13 18 18 Si 1.86799 * 119.99961 * 162.20301 * 16 14 13 19 19 H 1.48502 * 109.47243 * 94.66391 * 18 16 14 20 20 H 1.48500 * 109.47394 * 214.66501 * 18 16 14 21 21 H 1.48499 * 109.47372 * 334.66510 * 18 16 14 22 22 C 1.40881 * 119.79915 * 359.74120 * 13 12 11 23 23 C 1.36319 * 119.89094 * 359.97438 * 22 13 12 24 24 C 1.50701 * 109.46826 * 59.99754 * 5 3 2 25 25 C 1.38682 * 120.41594 * 259.72199 * 24 5 3 26 26 C 1.38631 * 118.41597 * 180.27846 * 25 24 5 27 27 C 1.38228 * 119.16421 * 0.02562 * 26 25 24 28 28 N 1.31855 * 120.76317 * 359.97438 * 27 26 25 29 29 C 1.31884 * 121.72548 * 359.97438 * 28 27 26 30 30 H 1.08998 * 109.46910 * 59.99905 * 1 2 3 31 31 H 1.08994 * 109.46814 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47097 * 300.00538 * 1 2 3 33 33 H 0.97000 * 120.00089 * 265.00313 * 7 5 3 34 34 H 1.07995 * 119.94679 * 0.02562 * 11 10 8 35 35 H 1.08001 * 120.04998 * 180.23329 * 12 11 10 36 36 H 0.97001 * 120.00074 * 180.02562 * 17 16 14 37 37 H 1.07998 * 120.05785 * 179.97438 * 22 13 12 38 38 H 1.08000 * 119.95168 * 179.97438 * 23 22 13 39 39 H 1.07999 * 120.79325 * 0.28076 * 25 24 5 40 40 H 1.08005 * 120.41516 * 179.97438 * 26 25 24 41 41 H 1.07996 * 119.62036 * 180.02562 * 27 26 25 42 42 H 1.08004 * 119.61694 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2749 -0.0006 6 1 3.9564 0.7806 0.8892 7 7 3.9818 2.6797 -0.0011 8 6 4.0758 3.3551 1.1614 9 8 3.8153 2.7986 2.2106 10 6 4.4938 4.7711 1.1609 11 6 4.7978 5.4085 -0.0482 12 6 5.1796 6.7171 -0.0541 13 6 5.2785 7.4251 1.1599 14 6 5.6791 8.7782 1.1594 15 1 5.3852 9.4286 1.9700 16 6 6.4587 9.2783 0.1066 17 7 7.1019 8.4552 -0.6781 18 14 6.5774 11.1212 -0.1741 19 1 7.7850 11.6494 0.5100 20 1 6.6740 11.3950 -1.6304 21 1 5.3676 11.7846 0.3751 22 6 4.9768 6.7780 2.3744 23 6 4.5902 5.4708 2.3698 24 6 4.1047 0.5920 -1.2314 25 6 4.6082 -0.6980 -1.1551 26 6 5.0982 -1.2844 -2.3118 27 6 5.0694 -0.5688 -3.4941 28 7 4.5831 0.6563 -3.5293 29 6 4.1078 1.2450 -2.4491 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 4.1892 3.1239 -0.8381 34 1 4.7256 4.8637 -0.9778 35 1 5.4103 7.2090 -0.9875 36 1 7.6414 8.8012 -1.4062 37 1 5.0516 7.3166 3.3074 38 1 4.3591 4.9736 3.3003 39 1 4.6182 -1.2330 -0.2170 40 1 5.4982 -2.2874 -2.2892 41 1 5.4489 -1.0186 -4.3996 42 1 3.7179 2.2500 -2.5168 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001412215845.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:43:54 Heat of formation + Delta-G solvation = -79.910460 kcal Electronic energy + Delta-G solvation = -28379.177779 eV Core-core repulsion = 24288.393074 eV Total energy + Delta-G solvation = -4090.784706 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.23404 -40.95188 -40.63093 -38.98244 -37.68355 -36.39339 -35.70141 -33.75587 -32.72514 -31.74012 -31.32239 -29.70347 -28.22144 -27.14224 -24.80990 -23.95088 -23.84216 -22.86449 -22.00789 -21.31743 -19.40229 -19.09611 -19.01915 -18.11067 -17.88859 -17.64492 -17.38152 -17.13556 -16.57477 -15.95599 -15.76334 -15.64071 -15.33801 -15.09537 -14.96253 -14.58359 -14.48204 -14.47285 -14.05143 -13.96408 -13.72121 -13.62869 -13.26720 -13.12698 -12.85980 -12.79595 -12.66407 -12.39172 -12.07088 -11.90537 -11.81019 -11.40694 -11.14020 -10.98174 -10.81458 -10.51503 -10.45712 -10.10641 -9.60675 -9.45243 -8.81478 -6.50442 -0.06958 0.25220 0.37141 0.96892 1.13208 1.31214 1.39495 1.44850 1.54830 2.07244 2.16222 2.22765 2.75576 2.80390 3.10793 3.53200 3.65098 3.68282 3.73058 3.93650 4.04018 4.12885 4.23452 4.24823 4.26281 4.35514 4.41884 4.53926 4.61893 4.71010 4.89929 5.00591 5.04976 5.10662 5.14680 5.16021 5.22724 5.26611 5.55758 5.65889 5.77112 5.88940 5.97045 6.19651 6.42775 6.51673 6.53582 6.74619 6.85901 6.91290 7.22779 8.13817 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.013864 B = 0.002817 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2019.180041 B = 9937.952760 C =11104.894429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.352 6.352 3 C 0.452 3.548 4 O -0.525 6.525 5 C 0.212 3.788 6 H 0.139 0.861 7 N -0.708 5.708 8 C 0.584 3.416 9 O -0.594 6.594 10 C -0.296 4.296 11 C -0.053 4.053 12 C -0.197 4.197 13 C 0.103 3.897 14 C -0.470 4.470 15 H 0.087 0.913 16 C 0.038 3.962 17 N -0.795 5.795 18 Si 0.988 3.012 19 H -0.260 1.260 20 H -0.262 1.262 21 H -0.258 1.258 22 C -0.252 4.252 23 C -0.028 4.028 24 C -0.156 4.156 25 C -0.046 4.046 26 C -0.155 4.155 27 C 0.098 3.902 28 N -0.506 5.506 29 C 0.097 3.903 30 H 0.060 0.940 31 H 0.141 0.859 32 H 0.055 0.945 33 H 0.410 0.590 34 H 0.117 0.883 35 H 0.114 0.886 36 H 0.298 0.702 37 H 0.107 0.893 38 H 0.105 0.895 39 H 0.167 0.833 40 H 0.180 0.820 41 H 0.188 0.812 42 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.574 -18.354 -6.990 19.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.267 6.267 3 C 0.293 3.707 4 O -0.413 6.413 5 C 0.104 3.896 6 H 0.156 0.844 7 N -0.362 5.362 8 C 0.379 3.621 9 O -0.477 6.477 10 C -0.300 4.300 11 C -0.072 4.072 12 C -0.216 4.216 13 C 0.100 3.900 14 C -0.497 4.497 15 H 0.105 0.895 16 C -0.182 4.182 17 N -0.419 5.419 18 Si 0.807 3.193 19 H -0.184 1.184 20 H -0.186 1.186 21 H -0.181 1.181 22 C -0.272 4.272 23 C -0.047 4.047 24 C -0.159 4.159 25 C -0.072 4.072 26 C -0.175 4.175 27 C -0.059 4.059 28 N -0.214 5.214 29 C -0.060 4.060 30 H 0.079 0.921 31 H 0.159 0.841 32 H 0.074 0.926 33 H 0.249 0.751 34 H 0.135 0.865 35 H 0.132 0.868 36 H 0.109 0.891 37 H 0.125 0.875 38 H 0.123 0.877 39 H 0.184 0.816 40 H 0.198 0.802 41 H 0.205 0.795 42 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -3.831 -18.027 -7.272 19.812 hybrid contribution -0.184 0.936 0.512 1.082 sum -4.015 -17.091 -6.760 18.813 Atomic orbital electron populations 1.23588 0.74698 1.06029 1.02240 1.86470 1.24972 1.31693 1.83558 1.24481 0.92661 0.81864 0.71684 1.90694 1.67258 1.37640 1.45667 1.19027 0.86215 0.84118 1.00270 0.84388 1.45595 1.69835 1.10706 1.10046 1.18401 0.74559 0.86572 0.82572 1.90612 1.53696 1.70783 1.32612 1.19042 1.22576 0.93327 0.95049 1.20681 0.96061 0.94838 0.95656 1.20991 1.07534 0.94869 0.98205 1.18134 0.86790 0.93476 0.91591 1.20146 1.27240 0.95471 1.06833 0.89475 1.26947 0.92168 1.05708 0.93351 1.69759 1.18713 1.39842 1.13536 0.85100 0.79966 0.75278 0.78945 1.18423 1.18613 1.18118 1.20866 1.13861 0.95100 0.97326 1.20497 0.94117 0.93873 0.96260 1.20337 1.04436 0.97531 0.93580 1.21837 0.92000 0.92086 1.01278 1.22572 0.99716 1.03076 0.92088 1.23533 0.93272 0.89222 0.99828 1.67766 1.10502 1.12589 1.30581 1.22529 0.95702 0.99820 0.87959 0.92144 0.84072 0.92602 0.75088 0.86509 0.86850 0.89101 0.87490 0.87656 0.81577 0.80236 0.79472 0.83811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 10.56 113.37 1.20 1.71 16 2 O -0.35 -8.61 10.48 -51.38 -0.54 -9.15 16 3 C 0.45 13.99 7.27 71.24 0.52 14.51 16 4 O -0.52 -20.23 16.07 21.97 0.35 -19.88 16 5 C 0.21 5.99 2.70 43.50 0.12 6.11 16 6 H 0.14 3.77 7.47 -2.39 -0.02 3.75 16 7 N -0.71 -24.29 4.51 -452.77 -2.04 -26.33 16 8 C 0.58 25.23 7.59 86.73 0.66 25.89 16 9 O -0.59 -28.12 15.99 -3.98 -0.06 -28.19 16 10 C -0.30 -13.91 5.89 -19.93 -0.12 -14.02 16 11 C -0.05 -2.43 9.47 22.26 0.21 -2.22 16 12 C -0.20 -9.94 8.63 22.47 0.19 -9.75 16 13 C 0.10 5.44 5.57 -21.28 -0.12 5.32 16 14 C -0.47 -23.87 9.04 23.46 0.21 -23.66 16 15 H 0.09 4.23 7.91 -2.91 -0.02 4.21 16 16 C 0.04 1.76 5.13 85.35 0.44 2.20 16 17 N -0.80 -38.20 10.97 21.87 0.24 -37.96 16 18 Si 0.99 34.97 29.60 68.60 2.03 37.00 16 19 H -0.26 -8.85 7.11 99.48 0.71 -8.14 16 20 H -0.26 -8.78 7.11 99.48 0.71 -8.07 16 21 H -0.26 -9.07 7.11 99.48 0.71 -8.36 16 22 C -0.25 -12.65 9.73 22.47 0.22 -12.43 16 23 C -0.03 -1.38 9.52 22.25 0.21 -1.17 16 24 C -0.16 -3.50 4.89 -19.77 -0.10 -3.60 16 25 C -0.05 -0.72 9.82 22.47 0.22 -0.50 16 26 C -0.16 -1.84 10.11 22.36 0.23 -1.62 16 27 C 0.10 1.52 11.18 84.69 0.95 2.47 16 28 N -0.51 -11.69 10.36 -195.84 -2.03 -13.72 16 29 C 0.10 2.35 10.22 84.67 0.87 3.22 16 30 H 0.06 1.15 8.13 -2.39 -0.02 1.13 16 31 H 0.14 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.06 1.15 8.13 -2.39 -0.02 1.13 16 33 H 0.41 12.94 4.90 -92.71 -0.45 12.48 16 34 H 0.12 4.48 6.37 -2.91 -0.02 4.46 16 35 H 0.11 5.80 6.17 -2.91 -0.02 5.79 16 36 H 0.30 12.68 8.29 -92.71 -0.77 11.91 16 37 H 0.11 5.01 8.06 -2.91 -0.02 4.98 16 38 H 0.11 4.95 7.63 -2.91 -0.02 4.93 16 39 H 0.17 1.75 8.06 -2.91 -0.02 1.73 16 40 H 0.18 0.71 8.06 -2.91 -0.02 0.69 16 41 H 0.19 1.63 8.06 -2.91 -0.02 1.61 16 42 H 0.14 3.61 6.93 -2.91 -0.02 3.59 16 Total: -1.00 -71.01 368.96 4.48 -66.53 By element: Atomic # 1 Polarization: 38.60 SS G_CDS: 0.63 Total: 39.23 kcal Atomic # 6 Polarization: -13.45 SS G_CDS: 5.90 Total: -7.55 kcal Atomic # 7 Polarization: -74.17 SS G_CDS: -3.83 Total: -78.00 kcal Atomic # 8 Polarization: -56.97 SS G_CDS: -0.25 Total: -57.21 kcal Atomic # 14 Polarization: 34.97 SS G_CDS: 2.03 Total: 37.00 kcal Total: -71.01 4.48 -66.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412215845.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.377 kcal (2) G-P(sol) polarization free energy of solvation -71.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds