Wall clock time and date at job start Tue Mar 31 2020 23:41:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34658 * 117.00236 * 2 1 4 4 O 1.21405 * 119.99812 * 359.97438 * 3 2 1 5 5 C 1.48245 * 120.00445 * 180.27655 * 3 2 1 6 6 C 1.39336 * 119.57711 * 179.72473 * 5 3 2 7 7 C 1.38459 * 119.18530 * 179.97438 * 6 5 3 8 8 C 1.39859 * 118.35778 * 0.02562 * 7 6 5 9 9 C 1.48016 * 120.45561 * 180.02562 * 8 7 6 10 10 O 1.21533 * 120.00273 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99972 * 179.97438 * 9 8 7 12 12 C 1.46504 * 119.99930 * 180.02562 * 11 9 8 13 13 C 1.50702 * 109.46873 * 180.02562 * 12 11 9 14 14 C 1.38641 * 119.74801 * 269.72828 * 13 12 11 15 15 C 1.37623 * 120.24521 * 179.72109 * 14 13 12 16 16 C 1.40709 * 119.74282 * 0.57326 * 15 14 13 17 17 C 1.41394 * 120.24422 * 179.68035 * 16 15 14 18 18 H 1.08002 * 120.00483 * 204.40872 * 17 16 15 19 19 C 1.39953 * 119.99873 * 24.40488 * 17 16 15 20 20 N 1.30827 * 119.99683 * 17.84996 * 19 17 16 21 21 Si 1.86798 * 120.00104 * 197.84632 * 19 17 16 22 22 H 1.48506 * 109.47012 * 90.00307 * 21 19 17 23 23 H 1.48500 * 109.47400 * 209.99749 * 21 19 17 24 24 H 1.48498 * 109.47474 * 330.00358 * 21 19 17 25 25 C 1.40712 * 119.51692 * 359.70061 * 16 15 14 26 26 C 1.37622 * 119.74262 * 0.02562 * 25 16 15 27 27 C 1.39735 * 119.08587 * 359.97438 * 8 7 6 28 28 N 1.31406 * 120.71953 * 359.73950 * 27 8 7 29 29 H 1.09007 * 109.46938 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47119 * 299.99970 * 1 2 3 31 31 H 1.08998 * 109.47053 * 60.00526 * 1 2 3 32 32 H 1.08003 * 120.40441 * 359.95631 * 6 5 3 33 33 H 1.07993 * 120.81813 * 180.02562 * 7 6 5 34 34 H 0.97003 * 119.99762 * 0.02562 * 11 9 8 35 35 H 1.08997 * 109.47513 * 300.00298 * 12 11 9 36 36 H 1.09001 * 109.46503 * 60.00884 * 12 11 9 37 37 H 1.07998 * 119.87469 * 359.97438 * 14 13 12 38 38 H 1.08000 * 120.12315 * 180.28006 * 15 14 13 39 39 H 0.97006 * 119.99637 * 179.97438 * 20 19 17 40 40 H 1.08003 * 120.13443 * 179.97438 * 25 16 15 41 41 H 1.08005 * 119.87492 * 179.97438 * 26 25 16 42 42 H 1.08001 * 119.64203 * 180.02562 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0634 1.1998 0.0000 4 8 1.4021 2.2180 -0.0005 5 6 3.5438 1.2774 -0.0062 6 6 4.1671 2.5236 -0.0120 7 6 5.5502 2.5866 -0.0172 8 6 6.2699 1.3874 -0.0170 9 6 7.7500 1.4007 -0.0219 10 8 8.3482 2.4585 -0.0256 11 7 8.4343 0.2395 -0.0211 12 6 9.8993 0.2527 -0.0254 13 6 10.4143 -1.1636 -0.0242 14 6 10.6582 -1.8059 1.1800 15 6 11.1231 -3.1011 1.1931 16 6 11.3623 -3.7693 -0.0219 17 6 11.8464 -5.0978 -0.0209 18 1 12.3920 -5.4745 -0.8734 19 6 11.6186 -5.9246 1.0851 20 7 10.6869 -5.6174 1.9506 21 14 12.6448 -7.4669 1.3253 22 1 13.8486 -7.1399 2.1310 23 1 11.8384 -8.4926 2.0344 24 1 13.0633 -7.9942 0.0017 25 6 11.1166 -3.1056 -1.2381 26 6 10.6463 -1.8122 -1.2272 27 6 5.5724 0.1766 -0.0110 28 7 4.2585 0.1589 -0.0005 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 3.5785 3.4291 -0.0127 33 1 6.0607 3.5383 -0.0213 34 1 7.9568 -0.6048 -0.0178 35 1 10.2555 0.7677 -0.9176 36 1 10.2605 0.7717 0.8624 37 1 10.4788 -1.2892 2.1112 38 1 11.3082 -3.6011 2.1323 39 1 10.5287 -6.1907 2.7169 40 1 11.2971 -3.6088 -2.1765 41 1 10.4574 -1.3006 -2.1595 42 1 6.1191 -0.7548 -0.0104 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001418179701.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:41:35 Heat of formation + Delta-G solvation = -65.763166 kcal Electronic energy + Delta-G solvation = -26966.023607 eV Core-core repulsion = 22875.852374 eV Total energy + Delta-G solvation = -4090.171233 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.28951 -40.29437 -39.01447 -37.71921 -36.85387 -34.94457 -33.61989 -33.05803 -32.19930 -30.36281 -29.42587 -28.41111 -27.15100 -25.51272 -24.06056 -23.64311 -21.99022 -21.14779 -20.62104 -20.21790 -18.77872 -17.94064 -17.63100 -17.44673 -16.78650 -16.66974 -15.52417 -15.43226 -15.27699 -15.20630 -14.81500 -14.37021 -14.21707 -13.89026 -13.73563 -13.63033 -13.33745 -13.31117 -12.98167 -12.58678 -12.43201 -12.13083 -12.08076 -11.75178 -11.22671 -11.21886 -11.15318 -11.10261 -10.81586 -10.51443 -10.39422 -10.36742 -9.85596 -9.72977 -9.71514 -9.54213 -9.28811 -8.85363 -7.64028 -7.52306 -6.92518 -4.52302 -0.19598 0.77418 1.82398 2.16768 2.47572 2.82328 2.92054 2.96892 3.00715 3.02425 3.39108 3.53091 3.68098 3.81624 4.33388 4.35361 4.45554 4.47580 4.69011 4.72690 4.76602 4.84550 5.16646 5.19567 5.47016 5.53427 5.59969 5.74436 5.80053 5.88455 5.99616 6.14216 6.19416 6.27326 6.59268 6.81279 6.92309 7.07006 7.11587 7.20157 7.43533 7.45001 7.54598 7.74177 7.90078 7.94258 8.13168 8.19546 8.48172 8.73156 8.80461 10.01286 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.013100 B = 0.002133 C = 0.001893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2136.852927 B =13123.442950 C =14790.437603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.331 6.331 3 C 0.525 3.475 4 O -0.497 6.497 5 C 0.103 3.897 6 C -0.112 4.112 7 C -0.026 4.026 8 C -0.147 4.147 9 C 0.551 3.449 10 O -0.540 6.540 11 N -0.705 5.705 12 C 0.184 3.816 13 C -0.251 4.251 14 C -0.080 4.080 15 C -0.170 4.170 16 C 0.117 3.883 17 C -0.456 4.456 18 H 0.080 0.920 19 C 0.075 3.925 20 N -0.785 5.785 21 Si 0.910 3.090 22 H -0.266 1.266 23 H -0.277 1.277 24 H -0.261 1.261 25 C -0.230 4.230 26 C -0.068 4.068 27 C 0.133 3.867 28 N -0.435 5.435 29 H 0.106 0.894 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.157 0.843 33 H 0.160 0.840 34 H 0.402 0.598 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.088 0.912 38 H 0.119 0.881 39 H 0.283 0.717 40 H 0.093 0.907 41 H 0.089 0.911 42 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.101 9.282 -1.518 16.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.246 6.246 3 C 0.368 3.632 4 O -0.384 6.384 5 C -0.033 4.033 6 C -0.132 4.132 7 C -0.053 4.053 8 C -0.152 4.152 9 C 0.336 3.664 10 O -0.418 6.418 11 N -0.356 5.356 12 C 0.063 3.937 13 C -0.253 4.253 14 C -0.099 4.099 15 C -0.189 4.189 16 C 0.114 3.886 17 C -0.485 4.485 18 H 0.098 0.902 19 C -0.144 4.144 20 N -0.410 5.410 21 Si 0.734 3.266 22 H -0.191 1.191 23 H -0.202 1.202 24 H -0.185 1.185 25 C -0.249 4.249 26 C -0.087 4.087 27 C -0.028 4.028 28 N -0.145 5.145 29 H 0.124 0.876 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.175 0.825 33 H 0.178 0.822 34 H 0.238 0.762 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.107 0.893 38 H 0.137 0.863 39 H 0.094 0.906 40 H 0.112 0.888 41 H 0.107 0.893 42 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -14.486 9.424 -1.295 17.330 hybrid contribution 0.356 -0.447 0.192 0.602 sum -14.130 8.977 -1.102 16.777 Atomic orbital electron populations 1.23388 0.75779 1.04232 1.02650 1.86695 1.23419 1.31439 1.83053 1.20820 0.87784 0.81900 0.72738 1.90852 1.65833 1.36190 1.45536 1.20189 0.90975 0.90303 1.01831 1.22089 0.94979 0.98392 0.97746 1.21781 0.92632 0.99203 0.91642 1.21517 0.95699 0.95395 1.02613 1.18055 0.85875 0.84794 0.77691 1.90769 1.69942 1.30633 1.50484 1.46564 1.08929 1.07720 1.72376 1.20045 0.76904 0.95647 1.01085 1.18939 1.17046 0.95410 0.93907 1.20562 0.99107 0.95076 0.95160 1.21319 1.05573 0.93195 0.98801 1.17682 0.87399 0.92524 0.90959 1.19692 1.30794 0.96220 1.01798 0.90193 1.25965 0.93760 0.99892 0.94757 1.69814 1.23684 1.36897 1.10576 0.86276 0.80393 0.80258 0.79658 1.19144 1.20192 1.18508 1.20980 1.10977 0.95890 0.97087 1.20410 0.98395 0.94634 0.95273 1.23174 0.89170 0.97730 0.92763 1.67673 1.07985 1.29678 1.09196 0.87580 0.91647 0.91660 0.82492 0.82206 0.76228 0.91960 0.91906 0.89342 0.86335 0.90613 0.88847 0.89319 0.80918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.56 101.05 1.07 1.30 16 2 O -0.33 -3.62 10.38 -40.38 -0.42 -4.04 16 3 C 0.53 6.11 7.95 34.84 0.28 6.39 16 4 O -0.50 -6.23 16.10 -19.19 -0.31 -6.54 16 5 C 0.10 1.19 6.75 -82.95 -0.56 0.63 16 6 C -0.11 -1.09 9.62 -39.09 -0.38 -1.46 16 7 C -0.03 -0.27 9.71 -38.89 -0.38 -0.64 16 8 C -0.15 -1.73 5.90 -104.72 -0.62 -2.34 16 9 C 0.55 7.86 7.79 -12.25 -0.10 7.76 16 10 O -0.54 -9.23 16.41 5.34 0.09 -9.15 16 11 N -0.71 -10.12 5.50 -62.37 -0.34 -10.46 16 12 C 0.18 3.03 5.79 -5.19 -0.03 3.00 16 13 C -0.25 -4.84 5.27 -104.33 -0.55 -5.39 16 14 C -0.08 -1.68 9.67 -39.66 -0.38 -2.07 16 15 C -0.17 -4.06 8.70 -38.87 -0.34 -4.40 16 16 C 0.12 2.90 5.57 -106.83 -0.60 2.31 16 17 C -0.46 -11.36 9.05 -37.74 -0.34 -11.70 16 18 H 0.08 1.92 7.91 -52.49 -0.41 1.51 16 19 C 0.08 1.78 5.14 -17.34 -0.09 1.69 16 20 N -0.79 -19.03 10.95 55.55 0.61 -18.42 16 21 Si 0.91 17.63 29.60 -169.99 -5.03 12.60 16 22 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 23 H -0.28 -5.26 7.11 56.52 0.40 -4.86 16 24 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 25 C -0.23 -5.19 9.80 -38.87 -0.38 -5.57 16 26 C -0.07 -1.37 9.67 -39.66 -0.38 -1.76 16 27 C 0.13 1.50 10.71 -17.17 -0.18 1.32 16 28 N -0.43 -5.35 10.10 -9.49 -0.10 -5.44 16 29 H 0.11 0.48 8.14 -51.92 -0.42 0.06 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.16 1.23 7.63 -52.48 -0.40 0.83 16 33 H 0.16 1.45 7.73 -52.49 -0.41 1.04 16 34 H 0.40 5.25 6.52 -40.82 -0.27 4.98 16 35 H 0.06 1.02 8.08 -51.93 -0.42 0.60 16 36 H 0.06 1.05 8.08 -51.93 -0.42 0.63 16 37 H 0.09 1.70 8.06 -52.49 -0.42 1.28 16 38 H 0.12 2.96 6.16 -52.49 -0.32 2.64 16 39 H 0.28 6.23 8.30 -40.82 -0.34 5.90 16 40 H 0.09 2.01 8.06 -52.48 -0.42 1.58 16 41 H 0.09 1.58 8.06 -52.48 -0.42 1.16 16 42 H 0.17 1.67 6.41 -52.49 -0.34 1.34 16 LS Contribution 373.40 15.07 5.63 5.63 Total: -1.00 -28.95 373.40 -8.49 -37.44 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: -4.66 Total: 9.33 kcal Atomic # 6 Polarization: -6.99 SS G_CDS: -3.96 Total: -10.95 kcal Atomic # 7 Polarization: -34.50 SS G_CDS: 0.17 Total: -34.33 kcal Atomic # 8 Polarization: -19.08 SS G_CDS: -0.64 Total: -19.72 kcal Atomic # 14 Polarization: 17.63 SS G_CDS: -5.03 Total: 12.60 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -28.95 -8.49 -37.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001418179701.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.322 kcal (2) G-P(sol) polarization free energy of solvation -28.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds