Wall clock time and date at job start Tue Mar 31 2020 23:41:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34674 * 116.99996 * 2 1 4 4 O 1.21429 * 119.99890 * 0.02562 * 3 2 1 5 5 C 1.48069 * 119.99976 * 180.02562 * 3 2 1 6 6 C 1.39350 * 119.72692 * 180.25566 * 5 3 2 7 7 C 1.38588 * 119.05146 * 180.24694 * 6 5 3 8 8 C 1.50705 * 120.75251 * 179.77852 * 7 6 5 9 9 N 1.46500 * 109.47108 * 269.72013 * 8 7 6 10 10 C 1.34775 * 119.99983 * 179.97438 * 9 8 7 11 11 O 1.21607 * 119.99826 * 0.02562 * 10 9 8 12 12 C 1.47437 * 120.00283 * 180.02562 * 10 9 8 13 13 C 1.39227 * 120.27694 * 355.71167 * 12 10 9 14 14 C 1.38223 * 120.09019 * 180.27968 * 13 12 10 15 15 C 1.38827 * 120.67436 * 359.69359 * 14 13 12 16 16 C 1.37596 * 120.57166 * 0.02562 * 15 14 13 17 17 C 1.40714 * 119.88143 * 0.02562 * 16 15 14 18 18 C 1.40885 * 120.33020 * 179.97438 * 17 16 15 19 19 H 1.07996 * 120.00278 * 216.32858 * 18 17 16 20 20 C 1.40279 * 119.99934 * 36.32229 * 18 17 16 21 21 N 1.30628 * 120.00021 * 190.51200 * 20 18 17 22 22 Si 1.86805 * 119.99864 * 10.51087 * 20 18 17 23 23 H 1.48495 * 109.47237 * 267.22291 * 22 20 18 24 24 H 1.48498 * 109.47138 * 27.22377 * 22 20 18 25 25 H 1.48504 * 109.46514 * 147.22203 * 22 20 18 26 26 C 1.38625 * 118.49650 * 359.50731 * 7 6 5 27 27 C 1.38582 * 119.35419 * 0.24801 * 26 7 6 28 28 N 1.31504 * 120.90715 * 0.02562 * 27 26 7 29 29 H 1.09004 * 109.46824 * 299.99514 * 1 2 3 30 30 H 1.08994 * 109.47428 * 59.99512 * 1 2 3 31 31 H 1.08999 * 109.47102 * 180.02562 * 1 2 3 32 32 H 1.07993 * 120.47164 * 0.02768 * 6 5 3 33 33 H 1.09001 * 109.47313 * 149.72393 * 8 7 6 34 34 H 1.09001 * 109.47168 * 29.72205 * 8 7 6 35 35 H 0.97001 * 120.00283 * 0.02562 * 9 8 7 36 36 H 1.08002 * 119.96175 * 359.97438 * 13 12 10 37 37 H 1.08002 * 119.66391 * 179.71666 * 14 13 12 38 38 H 1.08000 * 119.71712 * 180.02562 * 15 14 13 39 39 H 1.07999 * 120.06224 * 180.02562 * 16 15 14 40 40 H 0.96995 * 120.00424 * 180.02562 * 21 20 18 41 41 H 1.07991 * 120.32406 * 180.27351 * 26 7 6 42 42 H 1.07999 * 119.55113 * 179.97438 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0634 1.2000 0.0000 4 8 1.4021 2.2183 0.0005 5 6 3.5421 1.2774 -0.0006 6 6 4.1688 2.5220 0.0048 7 6 5.5535 2.5783 -0.0010 8 6 6.2710 3.9036 -0.0005 9 7 6.5034 4.3336 -1.3815 10 6 7.1337 5.4993 -1.6273 11 8 7.5099 6.1938 -0.7027 12 6 7.3671 5.9324 -3.0172 13 6 7.0195 5.1017 -4.0791 14 6 7.2454 5.5092 -5.3804 15 6 7.8130 6.7480 -5.6463 16 6 8.1618 7.5931 -4.6180 17 6 7.9433 7.2018 -3.2841 18 6 8.2974 8.0595 -2.2240 19 1 8.6916 7.6492 -1.3061 20 6 8.1381 9.4464 -2.3608 21 7 8.6510 10.2537 -1.4711 22 14 7.1923 10.1390 -3.8153 23 1 8.1373 10.4485 -4.9181 24 1 6.1985 9.1387 -4.2811 25 1 6.4892 11.3803 -3.4027 26 6 6.2638 1.3878 -0.0016 27 6 5.5746 0.1855 -0.0015 28 7 4.2598 0.1607 -0.0015 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 3.5838 3.4298 0.0099 33 1 7.2266 3.7993 0.5132 34 1 5.6613 4.6466 0.5137 35 1 6.2030 3.7798 -2.1191 36 1 6.5772 4.1356 -3.8857 37 1 6.9772 4.8575 -6.1988 38 1 7.9822 7.0509 -6.6690 39 1 8.6024 8.5551 -4.8342 40 1 8.5406 11.2127 -1.5655 41 1 7.3437 1.3972 -0.0016 42 1 6.1248 -0.7438 -0.0024 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001434233746.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:41:16 Heat of formation + Delta-G solvation = -54.973438 kcal Electronic energy + Delta-G solvation = -27756.959990 eV Core-core repulsion = 23667.256634 eV Total energy + Delta-G solvation = -4089.703355 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.17498 -40.01021 -39.06169 -37.13239 -36.77241 -35.12108 -33.72337 -32.45961 -31.96290 -30.50907 -30.11740 -28.22915 -26.93394 -25.29530 -24.83285 -23.15689 -22.31283 -21.30650 -20.86455 -19.66542 -18.32230 -17.72576 -17.47377 -16.74696 -16.71085 -16.43669 -16.29685 -15.52754 -15.33855 -15.01345 -14.37271 -14.30590 -14.14543 -14.11263 -13.97069 -13.62464 -13.31021 -12.79607 -12.73508 -12.57672 -12.45090 -12.41799 -12.14115 -11.90347 -11.50432 -11.10491 -11.09911 -10.97989 -10.75616 -10.49691 -10.34591 -10.09868 -9.97581 -9.84753 -9.63196 -9.29575 -8.59864 -8.54985 -7.86991 -7.64024 -6.94569 -4.53307 0.15666 0.76267 2.04591 2.07473 2.24648 2.56232 3.05970 3.15087 3.26218 3.36961 3.78535 3.87971 3.93870 3.94703 4.29096 4.38527 4.54761 4.58085 4.65284 4.79674 4.88118 4.96144 5.20670 5.25861 5.34506 5.40985 5.48948 5.66470 5.74430 5.90545 5.92205 6.02366 6.02868 6.16919 6.32729 6.46176 6.74605 6.89312 7.04916 7.17641 7.17853 7.34331 7.54036 7.54152 7.70149 7.96670 8.17901 8.42780 8.58705 8.81198 9.24253 10.02014 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.015183 B = 0.002476 C = 0.002464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.722192 B =11307.993037 C =11362.095920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.335 6.335 3 C 0.524 3.476 4 O -0.495 6.495 5 C 0.085 3.915 6 C -0.086 4.086 7 C -0.061 4.061 8 C 0.163 3.837 9 N -0.746 5.746 10 C 0.563 3.437 11 O -0.525 6.525 12 C -0.250 4.250 13 C -0.040 4.040 14 C -0.254 4.254 15 C -0.065 4.065 16 C -0.224 4.224 17 C 0.116 3.884 18 C -0.400 4.400 19 H 0.124 0.876 20 C 0.079 3.921 21 N -0.791 5.791 22 Si 0.906 3.094 23 H -0.268 1.268 24 H -0.242 1.242 25 H -0.288 1.288 26 C -0.120 4.120 27 C 0.096 3.904 28 N -0.435 5.435 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.104 0.896 32 H 0.154 0.846 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.393 0.607 36 H 0.094 0.906 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.105 0.895 40 H 0.287 0.713 41 H 0.149 0.851 42 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.093 -17.946 1.652 20.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.250 6.250 3 C 0.367 3.633 4 O -0.381 6.381 5 C -0.051 4.051 6 C -0.107 4.107 7 C -0.069 4.069 8 C 0.039 3.961 9 N -0.402 5.402 10 C 0.357 3.643 11 O -0.402 6.402 12 C -0.255 4.255 13 C -0.059 4.059 14 C -0.273 4.273 15 C -0.084 4.084 16 C -0.243 4.243 17 C 0.112 3.888 18 C -0.427 4.427 19 H 0.142 0.858 20 C -0.142 4.142 21 N -0.414 5.414 22 Si 0.732 3.268 23 H -0.194 1.194 24 H -0.165 1.165 25 H -0.215 1.215 26 C -0.140 4.140 27 C -0.064 4.064 28 N -0.146 5.146 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.122 0.878 32 H 0.171 0.829 33 H 0.099 0.901 34 H 0.097 0.903 35 H 0.227 0.773 36 H 0.112 0.888 37 H 0.115 0.885 38 H 0.115 0.885 39 H 0.123 0.877 40 H 0.098 0.902 41 H 0.167 0.833 42 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -9.463 -17.649 2.520 20.184 hybrid contribution -0.305 0.932 -0.999 1.400 sum -9.768 -16.717 1.521 19.421 Atomic orbital electron populations 1.23361 0.75978 1.03985 1.02746 1.86668 1.23274 1.31685 1.83417 1.20799 0.87875 0.81816 0.72844 1.90884 1.65844 1.36126 1.45283 1.19939 0.90745 0.90058 1.04375 1.22109 0.94760 0.98508 0.95298 1.20490 0.93053 0.96412 0.96935 1.20051 0.99747 0.90180 0.86076 1.46021 1.63733 1.24211 1.06262 1.18374 0.76803 0.79222 0.89932 1.90742 1.50684 1.52576 1.46180 1.19329 1.15470 1.00414 0.90314 1.20763 0.95811 0.96378 0.92968 1.20290 1.13160 0.98574 0.95324 1.20748 0.96173 0.94152 0.97278 1.21159 1.09305 1.00665 0.93192 1.17544 0.87806 0.91349 0.92136 1.20200 1.30523 0.89690 1.02300 0.85814 1.26392 0.93768 0.97132 0.96920 1.69562 1.33023 1.05481 1.33354 0.86392 0.81244 0.78445 0.80675 1.19386 1.16524 1.21547 1.22539 1.02474 0.92573 0.96458 1.22894 0.89142 0.98370 0.96000 1.67625 1.08496 1.30045 1.08480 0.91705 0.91646 0.87768 0.82855 0.90148 0.90265 0.77258 0.88822 0.88521 0.88528 0.87736 0.90188 0.83345 0.81385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.56 101.05 1.07 1.31 16 2 O -0.34 -3.72 10.38 -40.42 -0.42 -4.14 16 3 C 0.52 6.57 7.95 34.76 0.28 6.85 16 4 O -0.49 -7.06 16.11 -19.21 -0.31 -7.37 16 5 C 0.08 1.01 6.75 -83.02 -0.56 0.45 16 6 C -0.09 -0.99 9.34 -39.04 -0.36 -1.35 16 7 C -0.06 -0.65 5.28 -104.35 -0.55 -1.20 16 8 C 0.16 2.16 5.85 -5.19 -0.03 2.13 16 9 N -0.75 -11.89 5.50 -62.56 -0.34 -12.24 16 10 C 0.56 12.15 7.72 -12.51 -0.10 12.05 16 11 O -0.52 -13.31 13.54 5.27 0.07 -13.23 16 12 C -0.25 -5.68 5.92 -104.37 -0.62 -6.30 16 13 C -0.04 -0.78 9.52 -39.22 -0.37 -1.15 16 14 C -0.25 -4.89 10.03 -39.37 -0.39 -5.29 16 15 C -0.06 -1.32 10.01 -39.60 -0.40 -1.72 16 16 C -0.22 -5.20 7.00 -38.88 -0.27 -5.48 16 17 C 0.12 2.93 5.03 -106.54 -0.54 2.40 16 18 C -0.40 -11.01 8.31 -37.81 -0.31 -11.33 16 19 H 0.12 3.75 5.96 -52.49 -0.31 3.44 16 20 C 0.08 2.07 5.47 -17.30 -0.09 1.98 16 21 N -0.79 -21.21 13.92 55.56 0.77 -20.43 16 22 Si 0.91 20.50 24.52 -169.99 -4.17 16.33 16 23 H -0.27 -5.76 6.76 56.52 0.38 -5.38 16 24 H -0.24 -5.62 6.73 56.52 0.38 -5.24 16 25 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 26 C -0.12 -1.03 9.82 -39.31 -0.39 -1.42 16 27 C 0.10 0.82 11.18 -17.57 -0.20 0.62 16 28 N -0.43 -4.87 10.12 -9.81 -0.10 -4.97 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.15 1.78 7.64 -52.49 -0.40 1.38 16 33 H 0.08 1.05 8.10 -51.93 -0.42 0.63 16 34 H 0.08 1.12 8.10 -51.93 -0.42 0.70 16 35 H 0.39 5.45 6.51 -40.82 -0.27 5.18 16 36 H 0.09 1.47 6.42 -52.49 -0.34 1.13 16 37 H 0.10 1.59 8.06 -52.49 -0.42 1.17 16 38 H 0.10 1.69 8.06 -52.49 -0.42 1.26 16 39 H 0.10 2.39 5.01 -52.49 -0.26 2.13 16 40 H 0.29 6.92 8.29 -40.82 -0.34 6.58 16 41 H 0.15 0.98 8.06 -52.49 -0.42 0.56 16 42 H 0.17 0.88 8.06 -52.49 -0.42 0.46 16 LS Contribution 363.11 15.07 5.47 5.47 Total: -1.00 -32.39 363.11 -7.42 -39.81 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: -4.56 Total: 8.21 kcal Atomic # 6 Polarization: -3.60 SS G_CDS: -3.84 Total: -7.44 kcal Atomic # 7 Polarization: -37.97 SS G_CDS: 0.33 Total: -37.64 kcal Atomic # 8 Polarization: -24.09 SS G_CDS: -0.66 Total: -24.75 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -4.17 Total: 16.33 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.39 -7.42 -39.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434233746.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.162 kcal (2) G-P(sol) polarization free energy of solvation -32.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds