Wall clock time and date at job start Tue Mar 31 2020 23:41:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34674 * 116.99996 * 2 1 4 4 O 1.21429 * 119.99890 * 0.02562 * 3 2 1 5 5 C 1.48069 * 119.99976 * 180.02562 * 3 2 1 6 6 C 1.39350 * 119.72692 * 180.25566 * 5 3 2 7 7 C 1.38588 * 119.05146 * 180.24694 * 6 5 3 8 8 C 1.50705 * 120.75251 * 179.77852 * 7 6 5 9 9 N 1.46500 * 109.47108 * 269.72013 * 8 7 6 10 10 C 1.34775 * 119.99983 * 179.97438 * 9 8 7 11 11 O 1.21607 * 119.99826 * 0.02562 * 10 9 8 12 12 C 1.47437 * 120.00283 * 180.02562 * 10 9 8 13 13 C 1.39227 * 120.27694 * 355.71167 * 12 10 9 14 14 C 1.38223 * 120.09019 * 180.27968 * 13 12 10 15 15 C 1.38827 * 120.67436 * 359.69359 * 14 13 12 16 16 C 1.37596 * 120.57166 * 0.02562 * 15 14 13 17 17 C 1.40714 * 119.88143 * 0.02562 * 16 15 14 18 18 C 1.40885 * 120.33020 * 179.97438 * 17 16 15 19 19 H 1.07996 * 120.00278 * 216.32858 * 18 17 16 20 20 C 1.40279 * 119.99934 * 36.32229 * 18 17 16 21 21 N 1.30628 * 120.00021 * 190.51200 * 20 18 17 22 22 Si 1.86805 * 119.99864 * 10.51087 * 20 18 17 23 23 H 1.48495 * 109.47237 * 267.22291 * 22 20 18 24 24 H 1.48498 * 109.47138 * 27.22377 * 22 20 18 25 25 H 1.48504 * 109.46514 * 147.22203 * 22 20 18 26 26 C 1.38625 * 118.49650 * 359.50731 * 7 6 5 27 27 C 1.38582 * 119.35419 * 0.24801 * 26 7 6 28 28 N 1.31504 * 120.90715 * 0.02562 * 27 26 7 29 29 H 1.09004 * 109.46824 * 299.99514 * 1 2 3 30 30 H 1.08994 * 109.47428 * 59.99512 * 1 2 3 31 31 H 1.08999 * 109.47102 * 180.02562 * 1 2 3 32 32 H 1.07993 * 120.47164 * 0.02768 * 6 5 3 33 33 H 1.09001 * 109.47313 * 149.72393 * 8 7 6 34 34 H 1.09001 * 109.47168 * 29.72205 * 8 7 6 35 35 H 0.97001 * 120.00283 * 0.02562 * 9 8 7 36 36 H 1.08002 * 119.96175 * 359.97438 * 13 12 10 37 37 H 1.08002 * 119.66391 * 179.71666 * 14 13 12 38 38 H 1.08000 * 119.71712 * 180.02562 * 15 14 13 39 39 H 1.07999 * 120.06224 * 180.02562 * 16 15 14 40 40 H 0.96995 * 120.00424 * 180.02562 * 21 20 18 41 41 H 1.07991 * 120.32406 * 180.27351 * 26 7 6 42 42 H 1.07999 * 119.55113 * 179.97438 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0634 1.2000 0.0000 4 8 1.4021 2.2183 0.0005 5 6 3.5421 1.2774 -0.0006 6 6 4.1688 2.5220 0.0048 7 6 5.5535 2.5783 -0.0010 8 6 6.2710 3.9036 -0.0005 9 7 6.5034 4.3336 -1.3815 10 6 7.1337 5.4993 -1.6273 11 8 7.5099 6.1938 -0.7027 12 6 7.3671 5.9324 -3.0172 13 6 7.0195 5.1017 -4.0791 14 6 7.2454 5.5092 -5.3804 15 6 7.8130 6.7480 -5.6463 16 6 8.1618 7.5931 -4.6180 17 6 7.9433 7.2018 -3.2841 18 6 8.2974 8.0595 -2.2240 19 1 8.6916 7.6492 -1.3061 20 6 8.1381 9.4464 -2.3608 21 7 8.6510 10.2537 -1.4711 22 14 7.1923 10.1390 -3.8153 23 1 8.1373 10.4485 -4.9181 24 1 6.1985 9.1387 -4.2811 25 1 6.4892 11.3803 -3.4027 26 6 6.2638 1.3878 -0.0016 27 6 5.5746 0.1855 -0.0015 28 7 4.2598 0.1607 -0.0015 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 3.5838 3.4298 0.0099 33 1 7.2266 3.7993 0.5132 34 1 5.6613 4.6466 0.5137 35 1 6.2030 3.7798 -2.1191 36 1 6.5772 4.1356 -3.8857 37 1 6.9772 4.8575 -6.1988 38 1 7.9822 7.0509 -6.6690 39 1 8.6024 8.5551 -4.8342 40 1 8.5406 11.2127 -1.5655 41 1 7.3437 1.3972 -0.0016 42 1 6.1248 -0.7438 -0.0024 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001434233746.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:41:16 Heat of formation + Delta-G solvation = -77.101861 kcal Electronic energy + Delta-G solvation = -27757.919550 eV Core-core repulsion = 23667.256634 eV Total energy + Delta-G solvation = -4090.662916 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.04412 -41.02852 -40.56645 -38.78787 -37.66368 -36.45157 -35.50853 -33.72692 -32.77011 -32.28980 -31.68823 -28.89944 -28.18271 -26.97543 -25.68369 -24.25758 -23.72567 -22.79746 -21.99475 -21.25398 -19.56677 -19.16212 -18.59082 -18.08758 -17.56965 -17.35947 -17.20728 -17.11603 -16.76828 -16.00612 -15.84393 -15.80150 -15.50878 -15.40163 -15.08451 -14.73824 -14.50854 -14.21674 -14.11003 -14.02822 -13.69012 -13.62442 -13.25418 -13.12739 -12.88462 -12.69689 -12.51507 -12.20869 -12.05554 -12.02651 -11.87844 -11.62058 -11.12988 -11.08012 -10.78413 -10.41363 -10.30093 -10.07552 -9.52623 -9.41513 -8.82507 -6.48257 -0.67762 -0.06336 0.33578 0.83627 1.19661 1.23719 1.36940 1.45911 1.46182 2.09292 2.24015 2.35900 2.71308 2.75257 3.02875 3.34280 3.52804 3.62945 3.75685 3.84258 4.16350 4.20702 4.24997 4.26865 4.30588 4.43188 4.46897 4.59176 4.60613 4.68055 4.71291 4.74472 4.85114 5.01270 5.06351 5.16715 5.29661 5.41721 5.45997 5.50760 5.68137 5.86619 5.96206 6.26708 6.35034 6.47644 6.63583 6.71959 6.78793 6.87907 7.59371 8.21386 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.015183 B = 0.002476 C = 0.002464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.722192 B =11307.993037 C =11362.095920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.342 6.342 3 C 0.523 3.477 4 O -0.523 6.523 5 C 0.070 3.930 6 C -0.091 4.091 7 C -0.064 4.064 8 C 0.165 3.835 9 N -0.723 5.723 10 C 0.558 3.442 11 O -0.572 6.572 12 C -0.265 4.265 13 C -0.039 4.039 14 C -0.232 4.232 15 C -0.062 4.062 16 C -0.246 4.246 17 C 0.099 3.901 18 C -0.448 4.448 19 H 0.076 0.924 20 C 0.036 3.964 21 N -0.847 5.847 22 Si 0.964 3.036 23 H -0.248 1.248 24 H -0.250 1.250 25 H -0.282 1.282 26 C -0.101 4.101 27 C 0.105 3.895 28 N -0.447 5.447 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.136 0.864 32 H 0.142 0.858 33 H 0.085 0.915 34 H 0.064 0.936 35 H 0.407 0.593 36 H 0.138 0.862 37 H 0.143 0.857 38 H 0.135 0.865 39 H 0.101 0.899 40 H 0.293 0.707 41 H 0.176 0.824 42 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.007 -21.771 -1.379 24.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.257 6.257 3 C 0.367 3.633 4 O -0.412 6.412 5 C -0.065 4.065 6 C -0.111 4.111 7 C -0.072 4.072 8 C 0.042 3.958 9 N -0.378 5.378 10 C 0.351 3.649 11 O -0.453 6.453 12 C -0.270 4.270 13 C -0.057 4.057 14 C -0.250 4.250 15 C -0.080 4.080 16 C -0.265 4.265 17 C 0.095 3.905 18 C -0.477 4.477 19 H 0.094 0.906 20 C -0.178 4.178 21 N -0.474 5.474 22 Si 0.787 3.213 23 H -0.173 1.173 24 H -0.174 1.174 25 H -0.209 1.209 26 C -0.121 4.121 27 C -0.055 4.055 28 N -0.159 5.159 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.154 0.846 32 H 0.160 0.840 33 H 0.103 0.897 34 H 0.083 0.917 35 H 0.244 0.756 36 H 0.156 0.844 37 H 0.160 0.840 38 H 0.153 0.847 39 H 0.119 0.881 40 H 0.103 0.897 41 H 0.194 0.806 42 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -10.405 -21.541 -0.530 23.928 hybrid contribution -0.093 1.677 -0.153 1.687 sum -10.498 -19.864 -0.684 22.478 Atomic orbital electron populations 1.23679 0.74106 1.06138 1.02830 1.86654 1.25196 1.30904 1.82915 1.21005 0.88310 0.81842 0.72154 1.90861 1.66533 1.36989 1.46854 1.19881 0.90626 0.90357 1.05649 1.22023 0.95109 0.98230 0.95786 1.20170 0.92556 0.95782 0.98713 1.20070 1.00103 0.91386 0.84247 1.45730 1.61591 1.22400 1.08115 1.18459 0.76871 0.80212 0.89336 1.90748 1.52661 1.54486 1.47388 1.19753 1.14932 1.00169 0.92099 1.21206 0.94808 0.97534 0.92190 1.20936 1.09541 0.98143 0.96412 1.21247 0.94499 0.93904 0.98376 1.21255 1.10603 1.01611 0.93050 1.17825 0.87751 0.92247 0.92668 1.19956 1.34882 0.91025 1.01811 0.90611 1.27084 0.94349 0.96984 0.99350 1.69617 1.36114 1.05921 1.35724 0.85522 0.80005 0.77544 0.78219 1.17274 1.17378 1.20860 1.22835 1.03737 0.91527 0.94033 1.23551 0.88259 0.99765 0.93953 1.67663 1.09803 1.29647 1.08779 0.91623 0.91634 0.84587 0.83968 0.89700 0.91719 0.75601 0.84423 0.83952 0.84693 0.88094 0.89658 0.80643 0.77502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.56 113.37 1.20 1.54 16 2 O -0.34 -7.22 10.38 -55.83 -0.58 -7.80 16 3 C 0.52 12.92 7.95 70.43 0.56 13.48 16 4 O -0.52 -15.15 16.11 20.07 0.32 -14.83 16 5 C 0.07 1.59 6.75 41.88 0.28 1.87 16 6 C -0.09 -2.01 9.34 22.62 0.21 -1.80 16 7 C -0.06 -1.25 5.28 -19.69 -0.10 -1.36 16 8 C 0.17 4.29 5.85 85.63 0.50 4.79 16 9 N -0.72 -22.21 5.50 -470.08 -2.58 -24.79 16 10 C 0.56 24.48 7.72 86.67 0.67 25.15 16 11 O -0.57 -30.93 13.54 -4.05 -0.05 -30.98 16 12 C -0.26 -11.85 5.92 -19.70 -0.12 -11.97 16 13 C -0.04 -1.34 9.52 22.50 0.21 -1.13 16 14 C -0.23 -7.56 10.03 22.41 0.22 -7.33 16 15 C -0.06 -2.26 10.01 22.26 0.22 -2.04 16 16 C -0.25 -11.13 7.00 22.72 0.16 -10.97 16 17 C 0.10 5.10 5.03 -21.11 -0.11 4.99 16 18 C -0.45 -26.46 8.31 23.41 0.19 -26.26 16 19 H 0.08 5.08 5.96 -2.91 -0.02 5.07 16 20 C 0.04 2.05 5.47 85.37 0.47 2.52 16 21 N -0.85 -49.03 13.92 21.88 0.30 -48.73 16 22 Si 0.96 43.56 24.52 68.60 1.68 45.25 16 23 H -0.25 -10.22 6.76 99.48 0.67 -9.55 16 24 H -0.25 -11.39 6.73 99.48 0.67 -10.72 16 25 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 26 C -0.10 -1.37 9.82 22.44 0.22 -1.15 16 27 C 0.11 1.37 11.18 84.82 0.95 2.32 16 28 N -0.45 -8.86 10.12 -184.95 -1.87 -10.73 16 29 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.14 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.14 3.41 7.64 -2.91 -0.02 3.39 16 33 H 0.08 2.17 8.10 -2.39 -0.02 2.16 16 34 H 0.06 1.90 8.10 -2.39 -0.02 1.88 16 35 H 0.41 10.05 6.51 -92.71 -0.60 9.44 16 36 H 0.14 3.51 6.42 -2.91 -0.02 3.49 16 37 H 0.14 3.49 8.06 -2.91 -0.02 3.47 16 38 H 0.14 3.91 8.06 -2.91 -0.02 3.89 16 39 H 0.10 4.57 5.01 -2.91 -0.01 4.55 16 40 H 0.29 15.17 8.29 -92.71 -0.77 14.40 16 41 H 0.18 1.48 8.06 -2.92 -0.02 1.46 16 42 H 0.21 1.04 8.06 -2.91 -0.02 1.02 16 Total: -1.00 -78.27 363.11 3.38 -74.89 By element: Atomic # 1 Polarization: 24.66 SS G_CDS: 0.41 Total: 25.08 kcal Atomic # 6 Polarization: -13.10 SS G_CDS: 5.75 Total: -7.35 kcal Atomic # 7 Polarization: -80.10 SS G_CDS: -4.15 Total: -84.25 kcal Atomic # 8 Polarization: -53.30 SS G_CDS: -0.31 Total: -53.61 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 1.68 Total: 45.25 kcal Total: -78.27 3.38 -74.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434233746.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.210 kcal (2) G-P(sol) polarization free energy of solvation -78.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds