Wall clock time and date at job start Tue Mar 31 2020 23:00:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.74138 * 2 1 4 4 O 1.43197 * 109.70093 * 239.37495 * 2 1 3 5 5 C 1.36104 * 116.69363 * 194.05455 * 4 2 1 6 6 C 1.38699 * 119.39106 * 197.12919 * 5 4 2 7 7 C 1.38201 * 120.06579 * 180.30875 * 6 5 4 8 8 C 1.38249 * 120.11177 * 359.97438 * 7 6 5 9 9 C 1.38199 * 120.11223 * 359.94091 * 8 7 6 10 10 C 1.38695 * 120.07082 * 0.02562 * 9 8 7 11 11 O 1.36110 * 119.40201 * 180.13533 * 10 9 8 12 12 C 1.43177 * 116.71163 * 197.18006 * 11 10 9 13 13 H 1.09001 * 109.70371 * 194.09509 * 12 11 10 14 14 C 1.50702 * 109.70685 * 73.52123 * 12 11 10 15 15 O 1.21272 * 119.99678 * 331.98876 * 14 12 11 16 16 N 1.34770 * 120.00068 * 151.98561 * 14 12 11 17 17 C 1.37214 * 120.00289 * 5.27447 * 16 14 12 18 18 H 1.07995 * 119.99420 * 316.61887 * 17 16 14 19 19 C 1.38890 * 120.00114 * 136.61722 * 17 16 14 20 20 N 1.31409 * 120.00226 * 344.49580 * 19 17 16 21 21 Si 1.86801 * 119.99824 * 164.49430 * 19 17 16 22 22 H 1.48507 * 109.47081 * 59.99872 * 21 19 17 23 23 H 1.48492 * 109.47360 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.47054 * 300.00404 * 21 19 17 25 25 C 1.39429 * 120.00101 * 185.26851 * 16 14 12 26 26 C 1.39062 * 119.69855 * 166.89707 * 25 16 14 27 27 C 1.38385 * 119.09841 * 179.97438 * 26 25 16 28 28 C 1.38820 * 118.49282 * 0.02562 * 27 26 25 29 29 C 1.38149 * 119.31369 * 0.02562 * 28 27 26 30 30 N 1.31880 * 120.84824 * 0.27527 * 29 28 27 31 31 H 1.09006 * 109.47042 * 296.83062 * 1 2 3 32 32 H 1.09002 * 109.47395 * 56.82795 * 1 2 3 33 33 H 1.08991 * 109.47176 * 176.83284 * 1 2 3 34 34 H 1.07996 * 119.96757 * 0.27212 * 6 5 4 35 35 H 1.08004 * 119.94305 * 180.02562 * 7 6 5 36 36 H 1.08003 * 119.94435 * 179.97438 * 8 7 6 37 37 H 1.08001 * 119.96256 * 179.97438 * 9 8 7 38 38 H 0.97001 * 120.00159 * 185.04077 * 20 19 17 39 39 H 1.07995 * 120.45218 * 359.95912 * 26 25 16 40 40 H 1.08000 * 120.75136 * 180.02562 * 27 26 25 41 41 H 1.08004 * 120.34689 * 180.02562 * 28 27 26 42 42 H 1.07994 * 119.57524 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8982 1.0260 0.0000 4 8 2.0127 -0.6868 -1.1601 5 6 3.3294 -1.0315 -1.1628 6 6 3.9433 -1.3649 -2.3611 7 6 5.2779 -1.7233 -2.3791 8 6 6.0047 -1.7501 -1.2034 9 6 5.3995 -1.4174 -0.0063 10 6 4.0607 -1.0561 0.0187 11 8 3.4791 -0.7284 1.2048 12 6 2.0478 -0.7353 1.2435 13 1 1.7020 -0.2259 2.1429 14 6 1.5463 -2.1564 1.2398 15 8 2.2051 -3.0306 0.7179 16 7 0.3656 -2.4558 1.8166 17 6 -0.4303 -1.4533 2.3110 18 1 0.0080 -0.6478 2.8815 19 6 -1.7993 -1.4746 2.0778 20 7 -2.2955 -2.2605 1.1489 21 14 -2.9352 -0.3860 3.0849 22 1 -2.5598 1.0373 2.8881 23 1 -4.3381 -0.5928 2.6442 24 1 -2.8106 -0.7365 4.5226 25 6 -0.0474 -3.7842 1.9108 26 6 -1.1162 -4.1165 2.7359 27 6 -1.5160 -5.4387 2.8196 28 6 -0.8300 -6.3866 2.0727 29 6 0.2237 -5.9854 1.2744 30 7 0.5861 -4.7186 1.2191 31 1 -0.3633 0.4639 0.9171 32 1 -0.3634 0.5623 -0.8602 33 1 -0.3633 -1.0260 -0.0568 34 1 3.3776 -1.3449 -3.2808 35 1 5.7540 -1.9820 -3.3133 36 1 7.0474 -2.0309 -1.2205 37 1 5.9695 -1.4395 0.9107 38 1 -3.2410 -2.2224 0.9356 39 1 -1.6272 -3.3533 3.3039 40 1 -2.3430 -5.7266 3.4518 41 1 -1.1170 -7.4269 2.1151 42 1 0.7607 -6.7193 0.6918 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001461245173.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:00:59 Heat of formation + Delta-G solvation = -5.779886 kcal Electronic energy + Delta-G solvation = -31004.040952 eV Core-core repulsion = 26916.470789 eV Total energy + Delta-G solvation = -4087.570163 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.21770 -39.64935 -38.04704 -37.03268 -36.69979 -35.23447 -32.37492 -32.22968 -31.12691 -30.31580 -29.26222 -28.58532 -26.73734 -25.39532 -23.32320 -22.81575 -22.30041 -22.12195 -20.79251 -19.14069 -18.45109 -17.99866 -17.40005 -16.27072 -15.91493 -15.73885 -15.27334 -15.01723 -14.76769 -14.68628 -14.40953 -14.14518 -13.98785 -13.49220 -13.35842 -13.31523 -13.19198 -12.63089 -12.36667 -12.15563 -12.06050 -11.93426 -11.60149 -11.56422 -11.43046 -11.31834 -11.12381 -10.97974 -10.85160 -10.63219 -10.50712 -9.90615 -9.44434 -9.11091 -8.96009 -8.76037 -8.29523 -8.00468 -7.48683 -7.14364 -6.60326 -4.53877 1.68844 1.74958 2.15748 2.37987 2.91263 3.02073 3.03227 3.35278 3.45502 3.73690 3.91238 4.14539 4.19272 4.54346 4.71907 5.05132 5.19992 5.21126 5.26340 5.38658 5.52262 5.54354 5.62602 5.65726 5.77292 5.79203 5.85214 6.00124 6.18244 6.27155 6.34508 6.36629 6.45830 6.54186 6.62823 6.75141 6.78771 6.97072 7.02247 7.06221 7.16651 7.22229 7.39627 7.44650 7.76728 7.88711 8.07817 8.67533 8.80345 9.18805 9.63577 10.31444 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.012939 B = 0.005174 C = 0.004123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2163.456101 B = 5410.069633 C = 6789.248001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.074 3.926 3 H 0.081 0.919 4 O -0.300 6.300 5 C 0.076 3.924 6 C -0.122 4.122 7 C -0.123 4.123 8 C -0.126 4.126 9 C -0.116 4.116 10 C 0.072 3.928 11 O -0.295 6.295 12 C 0.047 3.953 13 H 0.149 0.851 14 C 0.475 3.525 15 O -0.496 6.496 16 N -0.379 5.379 17 C -0.376 4.376 18 H 0.099 0.901 19 C 0.058 3.942 20 N -0.830 5.830 21 Si 0.911 3.089 22 H -0.266 1.266 23 H -0.279 1.279 24 H -0.267 1.267 25 C 0.393 3.607 26 C -0.149 4.149 27 C -0.076 4.076 28 C -0.235 4.235 29 C 0.110 3.890 30 N -0.491 5.491 31 H 0.092 0.908 32 H 0.049 0.951 33 H 0.102 0.898 34 H 0.128 0.872 35 H 0.124 0.876 36 H 0.124 0.876 37 H 0.127 0.873 38 H 0.279 0.721 39 H 0.132 0.868 40 H 0.116 0.884 41 H 0.114 0.886 42 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.719 3.115 -0.385 5.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.017 3.983 3 H 0.098 0.902 4 O -0.215 6.215 5 C 0.030 3.970 6 C -0.141 4.141 7 C -0.141 4.141 8 C -0.145 4.145 9 C -0.135 4.135 10 C 0.026 3.974 11 O -0.208 6.208 12 C -0.013 4.013 13 H 0.166 0.834 14 C 0.262 3.738 15 O -0.369 6.369 16 N -0.092 5.092 17 C -0.502 4.502 18 H 0.117 0.883 19 C -0.153 4.153 20 N -0.461 5.461 21 Si 0.736 3.264 22 H -0.191 1.191 23 H -0.204 1.204 24 H -0.191 1.191 25 C 0.162 3.838 26 C -0.173 4.173 27 C -0.103 4.103 28 C -0.257 4.257 29 C -0.049 4.049 30 N -0.207 5.207 31 H 0.111 0.889 32 H 0.068 0.932 33 H 0.121 0.879 34 H 0.145 0.855 35 H 0.142 0.858 36 H 0.142 0.858 37 H 0.145 0.855 38 H 0.090 0.910 39 H 0.150 0.850 40 H 0.134 0.866 41 H 0.132 0.868 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 5.567 2.947 -1.242 6.420 hybrid contribution -1.806 0.233 1.080 2.117 sum 3.761 3.180 -0.162 4.928 Atomic orbital electron populations 1.22097 0.88750 1.06804 1.02169 1.23047 0.98518 0.93857 0.82896 0.90173 1.86348 1.21318 1.72895 1.40905 1.18891 0.84169 1.00573 0.93360 1.20341 0.94704 1.03390 0.95620 1.20746 0.93323 1.01813 0.98260 1.20737 0.99773 1.02148 0.91818 1.20317 0.92331 1.01861 0.98989 1.18814 0.93467 1.00924 0.84152 1.86331 1.20021 1.83928 1.30557 1.23226 0.78971 0.96707 1.02349 0.83399 1.20801 0.83543 0.89683 0.79800 1.90730 1.56893 1.48091 1.41223 1.41084 1.16355 1.02670 1.49131 1.19261 0.89288 1.05056 1.36626 0.88315 1.25426 0.98003 0.96692 0.95219 1.69930 1.15465 1.35309 1.25402 0.86240 0.79294 0.80412 0.80499 1.19087 1.20418 1.19150 1.18545 0.90448 0.84950 0.89827 1.21408 0.98815 0.96025 1.01089 1.21134 0.98238 0.92887 0.97992 1.21647 1.00937 0.99501 1.03650 1.22274 0.94194 0.92255 0.96135 1.67577 1.30321 1.00892 1.21902 0.88924 0.93209 0.87919 0.85450 0.85776 0.85773 0.85481 0.91004 0.85011 0.86617 0.86822 0.84488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.69 7.66 37.16 0.28 -2.41 16 2 C 0.07 1.40 3.34 -26.49 -0.09 1.31 16 3 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 4 O -0.30 -6.38 9.71 -32.88 -0.32 -6.70 16 5 C 0.08 1.53 5.78 -39.14 -0.23 1.30 16 6 C -0.12 -2.12 9.96 -39.42 -0.39 -2.51 16 7 C -0.12 -1.81 10.04 -39.59 -0.40 -2.21 16 8 C -0.13 -1.85 10.04 -39.59 -0.40 -2.25 16 9 C -0.12 -1.99 9.96 -39.43 -0.39 -2.38 16 10 C 0.07 1.43 5.33 -39.14 -0.21 1.22 16 11 O -0.29 -6.03 10.08 -46.17 -0.47 -6.50 16 12 C 0.05 0.96 2.95 -27.64 -0.08 0.88 16 13 H 0.15 2.64 6.46 -51.93 -0.34 2.30 16 14 C 0.48 11.56 5.71 -10.99 -0.06 11.49 16 15 O -0.50 -13.55 13.33 -12.39 -0.17 -13.72 16 16 N -0.38 -9.18 2.39 -60.71 -0.15 -9.32 16 17 C -0.38 -8.24 4.61 -14.90 -0.07 -8.31 16 18 H 0.10 1.97 6.55 -52.49 -0.34 1.63 16 19 C 0.06 1.25 2.29 -17.49 -0.04 1.21 16 20 N -0.83 -19.61 11.02 55.49 0.61 -19.00 16 21 Si 0.91 16.70 29.58 -169.99 -5.03 11.67 16 22 H -0.27 -4.70 7.11 56.52 0.40 -4.30 16 23 H -0.28 -5.26 7.11 56.52 0.40 -4.86 16 24 H -0.27 -4.89 7.11 56.52 0.40 -4.49 16 25 C 0.39 9.81 6.41 -154.63 -0.99 8.82 16 26 C -0.15 -3.36 7.65 -39.22 -0.30 -3.66 16 27 C -0.08 -1.50 10.17 -39.31 -0.40 -1.90 16 28 C -0.24 -4.44 10.11 -39.40 -0.40 -4.84 16 29 C 0.11 2.35 11.18 -17.56 -0.20 2.16 16 30 N -0.49 -12.49 7.97 -12.34 -0.10 -12.59 16 31 H 0.09 1.64 6.63 -51.93 -0.34 1.30 16 32 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.10 2.39 5.45 -51.93 -0.28 2.11 16 34 H 0.13 1.99 8.06 -52.49 -0.42 1.57 16 35 H 0.12 1.41 8.06 -52.48 -0.42 0.99 16 36 H 0.12 1.40 8.06 -52.48 -0.42 0.97 16 37 H 0.13 1.93 8.06 -52.49 -0.42 1.50 16 38 H 0.28 6.32 8.32 -40.82 -0.34 5.98 16 39 H 0.13 2.95 5.87 -52.49 -0.31 2.64 16 40 H 0.12 1.88 8.06 -52.49 -0.42 1.46 16 41 H 0.11 1.74 8.06 -52.48 -0.42 1.32 16 42 H 0.14 2.51 8.06 -52.49 -0.42 2.08 16 LS Contribution 340.54 15.07 5.13 5.13 Total: -1.00 -30.19 340.54 -9.39 -39.58 By element: Atomic # 1 Polarization: 18.08 SS G_CDS: -4.55 Total: 13.52 kcal Atomic # 6 Polarization: 2.28 SS G_CDS: -4.36 Total: -2.08 kcal Atomic # 7 Polarization: -41.28 SS G_CDS: 0.37 Total: -40.91 kcal Atomic # 8 Polarization: -25.96 SS G_CDS: -0.95 Total: -26.91 kcal Atomic # 14 Polarization: 16.70 SS G_CDS: -5.03 Total: 11.67 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.19 -9.39 -39.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001461245173.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.798 kcal (2) G-P(sol) polarization free energy of solvation -30.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds