Wall clock time and date at job start Tue Mar 31 2020 23:00:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.74138 * 2 1 4 4 O 1.43197 * 109.70093 * 239.37495 * 2 1 3 5 5 C 1.36104 * 116.69363 * 194.05455 * 4 2 1 6 6 C 1.38699 * 119.39106 * 197.12919 * 5 4 2 7 7 C 1.38201 * 120.06579 * 180.30875 * 6 5 4 8 8 C 1.38249 * 120.11177 * 359.97438 * 7 6 5 9 9 C 1.38199 * 120.11223 * 359.94091 * 8 7 6 10 10 C 1.38695 * 120.07082 * 0.02562 * 9 8 7 11 11 O 1.36110 * 119.40201 * 180.13533 * 10 9 8 12 12 C 1.43177 * 116.71163 * 197.18006 * 11 10 9 13 13 H 1.09001 * 109.70371 * 194.09509 * 12 11 10 14 14 C 1.50702 * 109.70685 * 73.52123 * 12 11 10 15 15 O 1.21272 * 119.99678 * 331.98876 * 14 12 11 16 16 N 1.34770 * 120.00068 * 151.98561 * 14 12 11 17 17 C 1.37214 * 120.00289 * 5.27447 * 16 14 12 18 18 H 1.07995 * 119.99420 * 316.61887 * 17 16 14 19 19 C 1.38890 * 120.00114 * 136.61722 * 17 16 14 20 20 N 1.31409 * 120.00226 * 344.49580 * 19 17 16 21 21 Si 1.86801 * 119.99824 * 164.49430 * 19 17 16 22 22 H 1.48507 * 109.47081 * 59.99872 * 21 19 17 23 23 H 1.48492 * 109.47360 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.47054 * 300.00404 * 21 19 17 25 25 C 1.39429 * 120.00101 * 185.26851 * 16 14 12 26 26 C 1.39062 * 119.69855 * 166.89707 * 25 16 14 27 27 C 1.38385 * 119.09841 * 179.97438 * 26 25 16 28 28 C 1.38820 * 118.49282 * 0.02562 * 27 26 25 29 29 C 1.38149 * 119.31369 * 0.02562 * 28 27 26 30 30 N 1.31880 * 120.84824 * 0.27527 * 29 28 27 31 31 H 1.09006 * 109.47042 * 296.83062 * 1 2 3 32 32 H 1.09002 * 109.47395 * 56.82795 * 1 2 3 33 33 H 1.08991 * 109.47176 * 176.83284 * 1 2 3 34 34 H 1.07996 * 119.96757 * 0.27212 * 6 5 4 35 35 H 1.08004 * 119.94305 * 180.02562 * 7 6 5 36 36 H 1.08003 * 119.94435 * 179.97438 * 8 7 6 37 37 H 1.08001 * 119.96256 * 179.97438 * 9 8 7 38 38 H 0.97001 * 120.00159 * 185.04077 * 20 19 17 39 39 H 1.07995 * 120.45218 * 359.95912 * 26 25 16 40 40 H 1.08000 * 120.75136 * 180.02562 * 27 26 25 41 41 H 1.08004 * 120.34689 * 180.02562 * 28 27 26 42 42 H 1.07994 * 119.57524 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8982 1.0260 0.0000 4 8 2.0127 -0.6868 -1.1601 5 6 3.3294 -1.0315 -1.1628 6 6 3.9433 -1.3649 -2.3611 7 6 5.2779 -1.7233 -2.3791 8 6 6.0047 -1.7501 -1.2034 9 6 5.3995 -1.4174 -0.0063 10 6 4.0607 -1.0561 0.0187 11 8 3.4791 -0.7284 1.2048 12 6 2.0478 -0.7353 1.2435 13 1 1.7020 -0.2259 2.1429 14 6 1.5463 -2.1564 1.2398 15 8 2.2051 -3.0306 0.7179 16 7 0.3656 -2.4558 1.8166 17 6 -0.4303 -1.4533 2.3110 18 1 0.0080 -0.6478 2.8815 19 6 -1.7993 -1.4746 2.0778 20 7 -2.2955 -2.2605 1.1489 21 14 -2.9352 -0.3860 3.0849 22 1 -2.5598 1.0373 2.8881 23 1 -4.3381 -0.5928 2.6442 24 1 -2.8106 -0.7365 4.5226 25 6 -0.0474 -3.7842 1.9108 26 6 -1.1162 -4.1165 2.7359 27 6 -1.5160 -5.4387 2.8196 28 6 -0.8300 -6.3866 2.0727 29 6 0.2237 -5.9854 1.2744 30 7 0.5861 -4.7186 1.2191 31 1 -0.3633 0.4639 0.9171 32 1 -0.3634 0.5623 -0.8602 33 1 -0.3633 -1.0260 -0.0568 34 1 3.3776 -1.3449 -3.2808 35 1 5.7540 -1.9820 -3.3133 36 1 7.0474 -2.0309 -1.2205 37 1 5.9695 -1.4395 0.9107 38 1 -3.2410 -2.2224 0.9356 39 1 -1.6272 -3.3533 3.3039 40 1 -2.3430 -5.7266 3.4518 41 1 -1.1170 -7.4269 2.1151 42 1 0.7607 -6.7193 0.6918 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001461245173.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:00:58 Heat of formation + Delta-G solvation = -22.052300 kcal Electronic energy + Delta-G solvation = -31004.746577 eV Core-core repulsion = 26916.470789 eV Total energy + Delta-G solvation = -4088.275788 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.72146 -41.28993 -39.62331 -38.47699 -38.18636 -36.98799 -33.93712 -33.85834 -32.80451 -31.64562 -30.87334 -29.96370 -28.30048 -27.08767 -24.88627 -24.30346 -23.85578 -23.54484 -22.37179 -20.77440 -19.93062 -19.51559 -18.96014 -17.70522 -17.54356 -17.35663 -16.84981 -16.59760 -16.31600 -16.21088 -15.72746 -15.69569 -15.55280 -15.04926 -14.85733 -14.81452 -14.71808 -14.19445 -13.97802 -13.69995 -13.61104 -13.43703 -13.17976 -13.05573 -12.88349 -12.72154 -12.51872 -12.45781 -12.35208 -12.11992 -11.95123 -11.37449 -11.09596 -10.82513 -10.63108 -10.44013 -9.80952 -9.51690 -8.91052 -8.84601 -8.26963 -6.25835 0.36910 0.43536 0.49585 0.73524 1.44612 1.52912 1.59804 1.79811 1.94443 2.23986 2.38933 2.57558 2.83607 2.91977 3.22594 3.46505 3.64306 3.73293 3.86853 4.00996 4.16342 4.17500 4.18690 4.20795 4.36583 4.48800 4.52795 4.56844 4.62075 4.73851 4.85105 4.89846 5.05787 5.11634 5.24816 5.29418 5.33457 5.39824 5.53909 5.54705 5.62411 5.79030 5.82973 5.96534 6.10959 6.35665 6.47013 6.97970 7.13039 7.44413 7.93789 8.66985 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.012939 B = 0.005174 C = 0.004123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2163.456101 B = 5410.069633 C = 6789.248001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.075 3.925 3 H 0.110 0.890 4 O -0.326 6.326 5 C 0.042 3.958 6 C -0.138 4.138 7 C -0.113 4.113 8 C -0.117 4.117 9 C -0.128 4.128 10 C 0.038 3.962 11 O -0.304 6.304 12 C 0.052 3.948 13 H 0.167 0.833 14 C 0.461 3.539 15 O -0.541 6.541 16 N -0.385 5.385 17 C -0.384 4.384 18 H 0.115 0.885 19 C 0.035 3.965 20 N -0.865 5.865 21 Si 0.971 3.029 22 H -0.250 1.250 23 H -0.287 1.287 24 H -0.264 1.264 25 C 0.358 3.642 26 C -0.163 4.163 27 C -0.075 4.075 28 C -0.217 4.217 29 C 0.089 3.911 30 N -0.536 5.536 31 H 0.105 0.895 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.136 0.864 35 H 0.166 0.834 36 H 0.167 0.833 37 H 0.141 0.859 38 H 0.276 0.724 39 H 0.127 0.873 40 H 0.154 0.846 41 H 0.159 0.841 42 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.123 3.112 -0.018 5.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.019 3.981 3 H 0.127 0.873 4 O -0.242 6.242 5 C -0.002 4.002 6 C -0.156 4.156 7 C -0.131 4.131 8 C -0.134 4.134 9 C -0.147 4.147 10 C -0.007 4.007 11 O -0.218 6.218 12 C -0.008 4.008 13 H 0.184 0.816 14 C 0.249 3.751 15 O -0.418 6.418 16 N -0.099 5.099 17 C -0.509 4.509 18 H 0.132 0.868 19 C -0.174 4.174 20 N -0.497 5.497 21 Si 0.793 3.207 22 H -0.174 1.174 23 H -0.213 1.213 24 H -0.188 1.188 25 C 0.128 3.872 26 C -0.187 4.187 27 C -0.101 4.101 28 C -0.239 4.239 29 C -0.069 4.069 30 N -0.252 5.252 31 H 0.123 0.877 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.154 0.846 35 H 0.183 0.817 36 H 0.185 0.815 37 H 0.159 0.841 38 H 0.086 0.914 39 H 0.145 0.855 40 H 0.172 0.828 41 H 0.177 0.823 42 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 5.977 2.952 -0.859 6.721 hybrid contribution -1.871 0.070 0.903 2.079 sum 4.106 3.023 0.044 5.099 Atomic orbital electron populations 1.21952 0.89044 1.04320 1.03370 1.23176 0.98216 0.94837 0.81920 0.87271 1.86276 1.22492 1.73675 1.41710 1.19301 0.83905 1.02408 0.94626 1.20731 0.96186 1.03543 0.95185 1.21265 0.92128 0.99533 1.00139 1.21268 1.01601 0.99923 0.90646 1.20740 0.91529 1.01573 1.00835 1.19226 0.94680 1.02877 0.83871 1.86288 1.19884 1.84271 1.31384 1.23238 0.79249 0.94548 1.03740 0.81601 1.21525 0.83487 0.90964 0.79088 1.90663 1.58172 1.49718 1.43238 1.41363 1.16545 1.03137 1.48838 1.19653 0.89590 1.05162 1.36528 0.86790 1.26056 0.98675 0.97357 0.95271 1.70078 1.15339 1.37155 1.27111 0.85323 0.76825 0.79625 0.78939 1.17412 1.21294 1.18833 1.18948 0.91726 0.85391 0.91132 1.21484 0.98535 0.97453 1.01192 1.21626 0.98785 0.91761 0.97893 1.22069 0.98974 1.01531 1.01293 1.22829 0.95439 0.91579 0.97097 1.67525 1.31872 1.02576 1.23266 0.87696 0.91876 0.92139 0.84601 0.81673 0.81542 0.84134 0.91410 0.85507 0.82809 0.82334 0.82368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.05 7.66 71.98 0.55 -4.50 16 2 C 0.07 2.91 3.34 30.75 0.10 3.01 16 3 H 0.11 3.52 8.14 -2.39 -0.02 3.50 16 4 O -0.33 -14.41 9.71 -82.48 -0.80 -15.21 16 5 C 0.04 1.76 5.78 22.56 0.13 1.89 16 6 C -0.14 -4.76 9.96 22.37 0.22 -4.54 16 7 C -0.11 -3.06 10.04 22.26 0.22 -2.83 16 8 C -0.12 -3.12 10.04 22.26 0.22 -2.89 16 9 C -0.13 -4.30 9.96 22.37 0.22 -4.08 16 10 C 0.04 1.55 5.33 22.56 0.12 1.67 16 11 O -0.30 -12.83 10.08 -69.86 -0.70 -13.54 16 12 C 0.05 2.17 2.95 30.00 0.09 2.25 16 13 H 0.17 6.02 6.46 -2.39 -0.02 6.01 16 14 C 0.46 23.47 5.71 87.66 0.50 23.97 16 15 O -0.54 -31.22 13.33 14.16 0.19 -31.03 16 16 N -0.39 -19.41 2.39 -464.38 -1.11 -20.52 16 17 C -0.38 -17.10 4.61 84.01 0.39 -16.71 16 18 H 0.11 4.55 6.55 -2.91 -0.02 4.53 16 19 C 0.03 1.50 2.29 84.91 0.19 1.70 16 20 N -0.87 -41.87 11.02 21.65 0.24 -41.63 16 21 Si 0.97 33.72 29.58 68.60 2.03 35.74 16 22 H -0.25 -8.02 7.11 99.48 0.71 -7.32 16 23 H -0.29 -10.31 7.11 99.48 0.71 -9.61 16 24 H -0.26 -8.99 7.11 99.48 0.71 -8.29 16 25 C 0.36 18.47 6.41 132.90 0.85 19.32 16 26 C -0.16 -7.40 7.65 22.50 0.17 -7.23 16 27 C -0.07 -2.81 10.17 22.44 0.23 -2.58 16 28 C -0.22 -7.76 10.11 22.39 0.23 -7.53 16 29 C 0.09 3.78 11.18 84.66 0.95 4.73 16 30 N -0.54 -28.24 7.97 -192.95 -1.54 -29.77 16 31 H 0.10 3.69 6.63 -2.38 -0.02 3.68 16 32 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 33 H 0.06 2.93 5.45 -2.39 -0.01 2.91 16 34 H 0.14 4.27 8.06 -2.91 -0.02 4.25 16 35 H 0.17 3.06 8.06 -2.91 -0.02 3.04 16 36 H 0.17 3.00 8.06 -2.91 -0.02 2.97 16 37 H 0.14 4.16 8.06 -2.91 -0.02 4.14 16 38 H 0.28 12.82 8.32 -92.71 -0.77 12.05 16 39 H 0.13 5.74 5.87 -2.91 -0.02 5.73 16 40 H 0.15 4.51 8.06 -2.91 -0.02 4.48 16 41 H 0.16 4.19 8.06 -2.91 -0.02 4.17 16 42 H 0.16 5.75 8.06 -2.91 -0.02 5.73 16 Total: -1.00 -70.92 340.54 4.76 -66.16 By element: Atomic # 1 Polarization: 43.08 SS G_CDS: 1.07 Total: 44.14 kcal Atomic # 6 Polarization: 0.27 SS G_CDS: 5.39 Total: 5.66 kcal Atomic # 7 Polarization: -89.51 SS G_CDS: -2.41 Total: -91.92 kcal Atomic # 8 Polarization: -58.46 SS G_CDS: -1.32 Total: -59.78 kcal Atomic # 14 Polarization: 33.72 SS G_CDS: 2.03 Total: 35.74 kcal Total: -70.92 4.76 -66.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001461245173.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.106 kcal (2) G-P(sol) polarization free energy of solvation -70.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds