Wall clock time and date at job start Tue Mar 31 2020 23:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99831 * 2 1 4 4 H 1.48504 * 109.46938 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47198 * 299.99690 * 3 2 1 6 6 H 1.48498 * 109.47360 * 59.99443 * 3 2 1 7 7 C 1.37871 * 119.99848 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00102 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00081 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.46877 * 179.97438 * 9 7 2 11 11 C 1.46498 * 120.00239 * 269.72094 * 10 9 7 12 12 C 1.50702 * 109.47034 * 90.00162 * 11 10 9 13 13 C 1.34514 * 125.79153 * 89.71611 * 12 11 10 14 14 C 1.41379 * 106.84290 * 179.89451 * 13 12 11 15 15 C 1.34510 * 106.83905 * 0.36747 * 14 13 12 16 16 O 1.34302 * 108.42539 * 359.78063 * 15 14 13 17 17 C 1.34777 * 119.99873 * 90.00288 * 10 9 7 18 18 O 1.21284 * 119.99754 * 359.97438 * 17 10 9 19 19 C 1.50696 * 120.00137 * 179.97438 * 17 10 9 20 20 N 1.46500 * 109.47324 * 179.97438 * 19 17 10 21 21 N 1.40284 * 126.75292 * 269.68547 * 20 19 17 22 22 N 1.28643 * 109.42329 * 179.87101 * 21 20 19 23 23 C 1.34791 * 110.31940 * 0.39953 * 22 21 20 24 24 C 1.40139 * 133.15417 * 179.74385 * 23 22 21 25 25 C 1.36419 * 119.79587 * 180.02562 * 24 23 22 26 26 C 1.38906 * 120.74896 * 0.02562 * 25 24 23 27 27 C 1.36665 * 120.58313 * 359.97438 * 26 25 24 28 28 C 1.37461 * 126.75576 * 89.99717 * 20 19 17 29 29 H 0.96998 * 119.99944 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.46978 * 60.00053 * 9 7 2 31 31 H 1.09000 * 109.46976 * 299.99298 * 9 7 2 32 32 H 1.08993 * 109.47575 * 210.00600 * 11 10 9 33 33 H 1.09001 * 109.46870 * 330.00556 * 11 10 9 34 34 H 1.07999 * 126.57565 * 0.02562 * 13 12 11 35 35 H 1.07996 * 126.57857 * 180.17210 * 14 13 12 36 36 H 1.08007 * 125.78678 * 179.75137 * 15 14 13 37 37 H 1.09004 * 109.47043 * 299.99732 * 19 17 10 38 38 H 1.09000 * 109.46978 * 59.99653 * 19 17 10 39 39 H 1.07993 * 120.10308 * 0.02562 * 24 23 22 40 40 H 1.08000 * 119.62251 * 180.02562 * 25 24 23 41 41 H 1.08006 * 119.70400 * 180.02562 * 26 25 24 42 42 H 1.08000 * 120.09259 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2031 -3.6127 0.0005 11 6 2.6744 -4.1735 -1.2681 12 6 3.9160 -3.4424 -1.7100 13 6 5.1799 -3.7742 -1.3907 14 6 6.0225 -2.8269 -2.0163 15 6 5.2228 -1.9681 -2.6737 16 8 3.9479 -2.3457 -2.4846 17 6 2.6409 -4.1249 1.1677 18 8 2.2471 -3.6636 2.2181 19 6 3.6198 -5.2706 1.1678 20 7 3.9376 -5.6414 2.5490 21 7 4.9781 -5.1281 3.3377 22 7 4.9502 -5.6843 4.4974 23 6 3.9418 -6.5761 4.5647 24 6 3.4870 -7.4344 5.5748 25 6 2.4134 -8.2438 5.3443 26 6 1.7632 -8.2286 4.1169 27 6 2.1871 -7.4007 3.1156 28 6 3.2787 -6.5648 3.3253 29 1 -0.4850 0.8400 -0.0004 30 1 0.6247 -2.5570 -0.8897 31 1 0.6241 -2.5567 0.8904 32 1 2.9032 -5.2308 -1.1354 33 1 1.8983 -4.0620 -2.0253 34 1 5.4912 -4.6060 -0.7763 35 1 7.1011 -2.7966 -1.9719 36 1 5.5504 -1.1186 -3.2547 37 1 3.1790 -6.1251 0.6542 38 1 4.5324 -4.9689 0.6538 39 1 3.9850 -7.4550 6.5329 40 1 2.0651 -8.9038 6.1249 41 1 0.9145 -8.8762 3.9528 42 1 1.6759 -7.3956 2.1642 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001464558935.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:55:10 Heat of formation + Delta-G solvation = 86.958115 kcal Electronic energy + Delta-G solvation = -29305.749462 eV Core-core repulsion = 25254.493472 eV Total energy + Delta-G solvation = -4051.255990 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.40369 -43.10256 -40.85317 -38.52388 -37.09565 -35.75682 -34.87631 -33.80619 -31.88824 -31.51516 -31.19372 -30.10978 -28.58130 -26.78720 -25.23294 -24.73611 -23.56768 -22.66207 -22.36661 -21.73565 -20.31242 -18.96907 -18.76040 -18.72049 -18.49172 -17.93052 -17.08799 -16.76134 -16.53196 -16.45802 -16.30716 -16.05049 -15.55886 -15.28452 -14.99147 -14.63593 -14.47842 -13.96195 -13.91030 -13.59472 -13.46709 -13.42148 -13.30809 -13.13173 -13.04615 -12.95828 -12.80337 -12.60998 -12.47703 -12.30011 -12.17905 -11.78517 -11.71710 -10.89445 -10.76138 -10.67532 -9.84352 -9.82957 -9.34062 -9.31592 -8.27492 -6.37076 -0.51649 0.37693 0.77399 0.97686 1.20944 1.27368 1.30522 1.40332 1.46830 1.72647 2.20536 2.28427 2.36010 2.73119 3.04247 3.08827 3.28427 3.40983 3.69006 3.75875 3.83019 3.92057 4.05439 4.17404 4.22551 4.30437 4.32049 4.37598 4.48412 4.73988 4.86259 4.92821 4.95830 4.99637 5.11186 5.14959 5.25930 5.38801 5.40855 5.45986 5.50385 5.67225 5.72106 5.86255 6.01116 6.31178 6.45930 6.69065 6.93614 7.09518 7.32457 8.80674 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011857 B = 0.003730 C = 0.003287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2360.927505 B = 7505.343289 C = 8516.145352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.013 3.987 3 Si 0.952 3.048 4 H -0.275 1.275 5 H -0.266 1.266 6 H -0.284 1.284 7 C -0.523 4.523 8 H 0.042 0.958 9 C 0.262 3.738 10 N -0.587 5.587 11 C 0.178 3.822 12 C -0.037 4.037 13 C -0.214 4.214 14 C -0.226 4.226 15 C -0.052 4.052 16 O -0.184 6.184 17 C 0.490 3.510 18 O -0.578 6.578 19 C 0.113 3.887 20 N -0.378 5.378 21 N -0.042 5.042 22 N -0.248 5.248 23 C -0.049 4.049 24 C -0.053 4.053 25 C -0.122 4.122 26 C -0.054 4.054 27 C -0.135 4.135 28 C 0.079 3.921 29 H 0.266 0.734 30 H 0.035 0.965 31 H 0.003 0.997 32 H 0.155 0.845 33 H 0.108 0.892 34 H 0.167 0.833 35 H 0.168 0.832 36 H 0.222 0.778 37 H 0.177 0.823 38 H 0.144 0.856 39 H 0.152 0.848 40 H 0.176 0.824 41 H 0.179 0.821 42 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.386 -21.155 -1.682 22.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.186 4.186 3 Si 0.778 3.222 4 H -0.199 1.199 5 H -0.191 1.191 6 H -0.210 1.210 7 C -0.561 4.561 8 H 0.060 0.940 9 C 0.142 3.858 10 N -0.318 5.318 11 C 0.056 3.944 12 C -0.088 4.088 13 C -0.234 4.234 14 C -0.245 4.245 15 C -0.120 4.120 16 O -0.080 6.080 17 C 0.276 3.724 18 O -0.457 6.457 19 C -0.011 4.011 20 N -0.172 5.172 21 N -0.020 5.020 22 N -0.126 5.126 23 C -0.174 4.174 24 C -0.075 4.075 25 C -0.143 4.143 26 C -0.075 4.075 27 C -0.157 4.157 28 C -0.042 4.042 29 H 0.075 0.925 30 H 0.053 0.947 31 H 0.021 0.979 32 H 0.173 0.827 33 H 0.126 0.874 34 H 0.184 0.816 35 H 0.185 0.815 36 H 0.238 0.762 37 H 0.195 0.805 38 H 0.161 0.839 39 H 0.169 0.831 40 H 0.193 0.807 41 H 0.196 0.804 42 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 6.948 -19.608 -1.302 20.843 hybrid contribution -0.156 1.441 -0.104 1.453 sum 6.792 -18.167 -1.406 19.446 Atomic orbital electron populations 1.70015 1.07083 1.27827 1.51638 1.25638 0.95671 1.02349 0.94899 0.85596 0.78725 0.79895 0.78032 1.19947 1.19069 1.21001 1.21517 0.92616 0.91931 1.50084 0.93981 1.18857 0.87452 0.83183 0.96346 1.48249 1.44119 1.34326 1.05143 1.20429 0.91790 0.96713 0.85462 1.23202 0.97952 0.89568 0.98097 1.21895 0.91703 1.04129 1.05639 1.22097 1.01754 0.97684 1.02935 1.24677 0.80194 1.02391 1.04713 1.84115 1.30514 1.38084 1.55249 1.21247 0.82296 0.85038 0.83779 1.90740 1.59060 1.63011 1.32900 1.22161 1.01275 0.99172 0.78521 1.49754 1.24061 1.30558 1.12865 1.81581 1.06977 1.16438 0.97045 1.74452 1.18990 1.07496 1.11616 1.20426 0.97339 1.02800 0.96827 1.20593 0.96841 0.92901 0.97178 1.21263 0.94677 0.99526 0.98832 1.21424 0.98908 0.95782 0.91417 1.20312 0.94804 0.97301 1.03289 1.19912 0.97772 0.94462 0.92086 0.92509 0.94731 0.97869 0.82725 0.87400 0.81591 0.81495 0.76152 0.80548 0.83861 0.83056 0.80655 0.80401 0.83129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.94 13.29 21.45 0.28 -55.65 16 2 C 0.01 0.78 5.46 84.65 0.46 1.24 16 3 Si 0.95 46.60 29.54 68.60 2.03 48.63 16 4 H -0.27 -13.38 7.11 99.48 0.71 -12.67 16 5 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 6 H -0.28 -13.87 7.11 99.48 0.71 -13.16 16 7 C -0.52 -30.17 9.39 25.60 0.24 -29.93 16 8 H 0.04 2.51 7.81 -2.91 -0.02 2.49 16 9 C 0.26 13.59 5.21 85.63 0.45 14.04 16 10 N -0.59 -22.84 2.44 -830.49 -2.03 -24.86 16 11 C 0.18 4.76 5.79 85.63 0.50 5.26 16 12 C -0.04 -1.12 6.90 24.83 0.17 -0.95 16 13 C -0.21 -5.69 9.99 22.19 0.22 -5.47 16 14 C -0.23 -5.95 10.91 22.19 0.24 -5.71 16 15 C -0.05 -1.49 12.09 66.97 0.81 -0.68 16 16 O -0.18 -6.56 10.65 -2.52 -0.03 -6.59 16 17 C 0.49 19.32 7.74 87.66 0.68 20.00 16 18 O -0.58 -30.32 16.01 -3.04 -0.05 -30.37 16 19 C 0.11 3.02 5.54 85.63 0.47 3.49 16 20 N -0.38 -12.43 3.20 -343.42 -1.10 -13.53 16 21 N -0.04 -1.62 13.73 37.02 0.51 -1.11 16 22 N -0.25 -9.25 12.36 -52.44 -0.65 -9.90 16 23 C -0.05 -1.51 7.26 39.72 0.29 -1.22 16 24 C -0.05 -1.14 10.06 22.31 0.22 -0.92 16 25 C -0.12 -1.74 9.95 22.01 0.22 -1.52 16 26 C -0.05 -0.75 9.97 22.06 0.22 -0.53 16 27 C -0.14 -2.77 10.01 22.10 0.22 -2.55 16 28 C 0.08 2.32 6.94 39.03 0.27 2.59 16 29 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 30 H 0.03 1.79 7.89 -2.39 -0.02 1.77 16 31 H 0.00 0.19 7.42 -2.39 -0.02 0.18 16 32 H 0.16 2.21 6.43 -2.39 -0.02 2.20 16 33 H 0.11 2.75 7.89 -2.39 -0.02 2.73 16 34 H 0.17 3.38 6.16 -2.91 -0.02 3.36 16 35 H 0.17 3.44 8.06 -2.91 -0.02 3.42 16 36 H 0.22 4.73 8.06 -2.91 -0.02 4.71 16 37 H 0.18 2.56 7.39 -2.38 -0.02 2.55 16 38 H 0.14 3.37 5.13 -2.39 -0.01 3.36 16 39 H 0.15 2.59 8.06 -2.91 -0.02 2.56 16 40 H 0.18 1.05 8.06 -2.91 -0.02 1.03 16 41 H 0.18 1.01 8.06 -2.91 -0.02 0.99 16 42 H 0.15 2.33 8.06 -2.91 -0.02 2.30 16 Total: -1.00 -91.28 368.54 5.72 -85.55 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: 1.07 Total: 10.69 kcal Atomic # 6 Polarization: -8.55 SS G_CDS: 5.69 Total: -2.86 kcal Atomic # 7 Polarization: -102.07 SS G_CDS: -2.98 Total: -105.05 kcal Atomic # 8 Polarization: -36.88 SS G_CDS: -0.08 Total: -36.95 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 2.03 Total: 48.63 kcal Total: -91.28 5.72 -85.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001464558935.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.511 kcal (2) G-P(sol) polarization free energy of solvation -91.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds