Wall clock time and date at job start Tue Mar 31 2020 23:23:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.35058 * 125.57017 * 2 1 4 4 O 1.21296 * 127.28463 * 359.97438 * 3 2 1 5 5 C 1.49980 * 105.43200 * 179.97438 * 3 2 1 6 6 O 1.21305 * 127.28687 * 180.02562 * 5 3 2 7 7 N 1.35059 * 105.43194 * 359.97438 * 5 3 2 8 8 C 1.46502 * 125.56546 * 179.97438 * 7 5 3 9 9 C 1.50700 * 109.47141 * 90.02870 * 8 7 5 10 10 O 1.21280 * 119.99729 * 359.97438 * 9 8 7 11 11 N 1.34776 * 120.00383 * 179.97438 * 9 8 7 12 12 C 1.46497 * 120.00201 * 179.97438 * 11 9 8 13 13 C 1.53000 * 109.47380 * 179.97438 * 12 11 9 14 14 O 1.42908 * 113.41041 * 51.79697 * 13 12 11 15 15 C 1.53492 * 114.20829 * 184.99956 * 13 12 11 16 16 N 1.47060 * 88.05022 * 87.55077 * 15 13 12 17 17 C 1.36936 * 136.06089 * 207.05777 * 16 15 13 18 18 H 1.08006 * 119.99876 * 6.94734 * 17 16 15 19 19 C 1.38810 * 120.00399 * 186.94998 * 17 16 15 20 20 N 1.31612 * 120.00085 * 7.42871 * 19 17 16 21 21 Si 1.86803 * 120.00035 * 187.43356 * 19 17 16 22 22 H 1.48504 * 109.47363 * 94.80274 * 21 19 17 23 23 H 1.48502 * 109.47070 * 214.80166 * 21 19 17 24 24 H 1.48502 * 109.47114 * 334.79916 * 21 19 17 25 25 C 1.47069 * 87.88520 * 27.08980 * 16 15 13 26 26 C 1.34276 * 108.86829 * 0.22778 * 7 5 3 27 27 O 1.21475 * 124.29948 * 179.75307 * 26 7 5 28 28 H 1.09006 * 109.46720 * 0.02984 * 1 2 3 29 29 H 1.08994 * 109.47111 * 120.02345 * 1 2 3 30 30 H 1.08991 * 109.47589 * 240.02704 * 1 2 3 31 31 H 1.09001 * 109.47372 * 330.02702 * 8 7 5 32 32 H 1.08998 * 109.47299 * 210.02619 * 8 7 5 33 33 H 0.97001 * 119.99885 * 359.97438 * 11 9 8 34 34 H 1.09001 * 109.47196 * 59.99754 * 12 11 9 35 35 H 1.09004 * 109.47202 * 299.99631 * 12 11 9 36 36 H 0.96700 * 114.00191 * 313.20371 * 14 13 12 37 37 H 1.09000 * 113.46894 * 332.73515 * 15 13 12 38 38 H 1.09009 * 113.46545 * 202.36123 * 15 13 12 39 39 H 0.96999 * 120.00694 * 180.02562 * 20 19 17 40 40 H 1.09004 * 113.46737 * 87.66488 * 25 16 15 41 41 H 1.09000 * 113.47095 * 218.03902 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2506 1.0986 0.0000 4 8 1.8930 2.2576 -0.0004 5 6 3.6587 0.5822 0.0006 6 8 4.6809 1.2353 0.0013 7 7 3.5479 -0.7638 0.0015 8 6 4.6657 -1.7108 0.0019 9 6 5.0489 -2.0352 1.4228 10 8 4.4477 -1.5251 2.3444 11 7 6.0595 -2.8920 1.6695 12 6 6.4323 -3.2069 3.0508 13 6 7.5987 -4.1970 3.0513 14 8 8.6983 -3.7794 2.2395 15 6 8.0001 -4.6961 4.4462 16 7 6.9952 -5.7598 4.2997 17 6 6.2249 -6.5118 5.1459 18 1 6.2116 -6.2917 6.2032 19 6 5.4612 -7.5571 4.6449 20 7 5.5871 -7.9197 3.3860 21 14 4.2545 -8.4490 5.7576 22 1 2.9038 -7.8515 5.6029 23 1 4.2059 -9.8855 5.3844 24 1 4.6944 -8.3191 7.1699 25 6 7.1823 -5.6610 2.8443 26 6 2.2460 -1.0924 -0.0036 27 8 1.8278 -2.2328 -0.0085 28 1 -0.3633 1.0277 -0.0005 29 1 -0.3633 -0.5142 -0.8897 30 1 -0.3634 -0.5134 0.8901 31 1 5.5183 -1.2668 -0.5120 32 1 4.3677 -2.6249 -0.5117 33 1 6.5400 -3.3003 0.9324 34 1 5.5797 -3.6502 3.5652 35 1 6.7310 -2.2927 3.5639 36 1 8.4420 -3.4656 1.3614 37 1 7.7705 -3.9887 5.2430 38 1 9.0231 -5.0692 4.4960 39 1 5.0532 -8.6498 3.0358 40 1 7.9875 -6.2911 2.4664 41 1 6.2574 -5.7751 2.2790 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001500942591.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:23:06 Heat of formation + Delta-G solvation = -59.509360 kcal Electronic energy + Delta-G solvation = -29862.353712 eV Core-core repulsion = 25361.604402 eV Total energy + Delta-G solvation = -4500.749311 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.131 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.74701 -40.15823 -39.61499 -39.25873 -38.63070 -36.82782 -35.65414 -35.20048 -34.21428 -32.11263 -31.00929 -28.57054 -27.40031 -26.08062 -25.78337 -24.85591 -22.71252 -22.41775 -22.04922 -20.77171 -19.21667 -18.55710 -18.38085 -17.56187 -17.46580 -17.00051 -16.84209 -16.53851 -15.99193 -15.70456 -15.54866 -15.35363 -15.10317 -14.94290 -14.61422 -14.14289 -13.93383 -13.70113 -13.60587 -13.23263 -13.18937 -13.09601 -12.77617 -12.51762 -12.08985 -11.79540 -11.42295 -11.18923 -11.04775 -11.01855 -10.91856 -10.63170 -10.58505 -10.46902 -10.14080 -9.86353 -9.63220 -9.22868 -8.97603 -8.87374 -7.02738 -5.89001 -3.21279 -0.10211 1.26906 1.59529 2.11724 2.14400 2.40630 3.01402 3.35569 3.40572 3.42411 3.45034 4.09938 4.25137 4.38620 4.53161 4.57774 4.68138 4.73168 4.81239 4.84763 4.96790 5.11197 5.11541 5.21319 5.22100 5.49576 5.79745 6.13743 6.15278 6.22011 6.25649 6.39396 6.45350 6.52957 6.73335 6.93360 7.02505 7.10527 7.29954 7.35882 7.83962 7.90663 8.02869 8.92457 9.59016 10.49319 11.29520 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.013532 B = 0.002960 C = 0.002572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2068.665994 B = 9458.506031 C =10882.784769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.574 5.574 3 C 0.514 3.486 4 O -0.413 6.413 5 C 0.514 3.486 6 O -0.407 6.407 7 N -0.558 5.558 8 C 0.101 3.899 9 C 0.500 3.500 10 O -0.529 6.529 11 N -0.715 5.715 12 C 0.128 3.872 13 C 0.048 3.952 14 O -0.548 6.548 15 C 0.138 3.862 16 N -0.601 5.601 17 C -0.222 4.222 18 H 0.085 0.915 19 C -0.003 4.003 20 N -0.917 5.917 21 Si 0.914 3.086 22 H -0.287 1.287 23 H -0.290 1.290 24 H -0.279 1.279 25 C 0.145 3.855 26 C 0.714 3.286 27 O -0.476 6.476 28 H 0.100 0.900 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.134 0.866 32 H 0.137 0.863 33 H 0.399 0.601 34 H 0.096 0.904 35 H 0.071 0.929 36 H 0.362 0.638 37 H 0.049 0.951 38 H 0.047 0.953 39 H 0.255 0.745 40 H 0.040 0.960 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.363 15.625 -12.982 21.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.324 5.324 3 C 0.294 3.706 4 O -0.278 6.278 5 C 0.294 3.706 6 O -0.270 6.270 7 N -0.307 5.307 8 C -0.023 4.023 9 C 0.284 3.716 10 O -0.404 6.404 11 N -0.368 5.368 12 C 0.005 3.995 13 C 0.006 3.994 14 O -0.352 6.352 15 C 0.011 3.989 16 N -0.329 5.329 17 C -0.348 4.348 18 H 0.103 0.897 19 C -0.201 4.201 20 N -0.563 5.563 21 Si 0.744 3.256 22 H -0.214 1.214 23 H -0.216 1.216 24 H -0.204 1.204 25 C 0.019 3.981 26 C 0.417 3.583 27 O -0.343 6.343 28 H 0.119 0.881 29 H 0.105 0.895 30 H 0.106 0.894 31 H 0.152 0.848 32 H 0.155 0.845 33 H 0.234 0.766 34 H 0.115 0.885 35 H 0.090 0.910 36 H 0.208 0.792 37 H 0.067 0.933 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.057 0.943 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.571 15.903 -11.656 20.489 hybrid contribution -0.620 -0.886 -0.247 1.110 sum -6.191 15.017 -11.903 20.137 Atomic orbital electron populations 1.22006 0.72999 1.05281 1.04784 1.46536 1.10061 1.07035 1.68726 1.20795 0.87613 0.85608 0.76539 1.90848 1.79377 1.16594 1.40988 1.20835 0.90959 0.82268 0.76502 1.90858 1.33388 1.62519 1.40275 1.46100 1.07554 1.08403 1.68622 1.21631 0.88912 0.94910 0.96834 1.20522 0.80471 0.79707 0.90948 1.90761 1.52206 1.51765 1.45712 1.45758 1.35136 1.45946 1.09988 1.21605 0.98296 0.98136 0.81439 1.23863 0.85756 0.94592 0.95177 1.86608 1.33484 1.86323 1.28743 1.22319 0.94259 0.90872 0.91478 1.45322 1.42357 1.42642 1.02544 1.18912 1.17511 1.08567 0.89854 0.89726 1.24841 1.00741 0.97703 0.96778 1.69841 1.42480 1.30495 1.13437 0.86071 0.81129 0.78820 0.79568 1.21386 1.21604 1.20405 1.22624 0.98977 0.88526 0.88000 1.15796 0.80625 0.85046 0.76874 1.91078 1.75834 1.18261 1.49112 0.88142 0.89505 0.89427 0.84794 0.84485 0.76636 0.88544 0.91038 0.79192 0.93291 0.93500 0.93505 0.94268 0.91958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.49 10.95 59.85 0.66 1.15 16 2 N -0.57 -5.13 3.06 -128.67 -0.39 -5.52 16 3 C 0.51 5.20 8.31 -11.21 -0.09 5.11 16 4 O -0.41 -4.85 17.65 5.54 0.10 -4.75 16 5 C 0.51 5.59 8.31 -11.21 -0.09 5.50 16 6 O -0.41 -5.19 17.88 5.54 0.10 -5.09 16 7 N -0.56 -5.75 2.15 -122.51 -0.26 -6.01 16 8 C 0.10 0.86 6.34 -5.19 -0.03 0.83 16 9 C 0.50 6.56 7.90 -10.99 -0.09 6.47 16 10 O -0.53 -9.33 16.43 5.56 0.09 -9.24 16 11 N -0.72 -8.81 5.32 -60.30 -0.32 -9.13 16 12 C 0.13 2.09 5.32 -4.04 -0.02 2.06 16 13 C 0.05 0.84 1.74 -90.05 -0.16 0.68 16 14 O -0.55 -8.17 13.56 -35.23 -0.48 -8.65 16 15 C 0.14 2.79 8.10 -8.52 -0.07 2.72 16 16 N -0.60 -14.88 3.55 -184.57 -0.65 -15.53 16 17 C -0.22 -6.07 10.73 -15.06 -0.16 -6.23 16 18 H 0.09 2.24 7.84 -52.48 -0.41 1.83 16 19 C 0.00 -0.09 5.49 -17.43 -0.10 -0.19 16 20 N -0.92 -26.51 11.86 55.49 0.66 -25.85 16 21 Si 0.91 21.87 29.56 -169.99 -5.02 16.85 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 25 C 0.15 3.19 6.62 -8.45 -0.06 3.14 16 26 C 0.71 7.80 8.32 -87.81 -0.73 7.06 16 27 O -0.48 -6.41 17.38 5.39 0.09 -6.32 16 28 H 0.10 0.42 7.76 -51.93 -0.40 0.01 16 29 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.13 0.68 8.10 -51.93 -0.42 0.25 16 32 H 0.14 0.88 7.97 -51.93 -0.41 0.47 16 33 H 0.40 3.49 7.24 -40.82 -0.30 3.19 16 34 H 0.10 1.94 7.93 -51.93 -0.41 1.53 16 35 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.36 3.64 7.50 45.56 0.34 3.98 16 37 H 0.05 0.93 8.12 -51.93 -0.42 0.51 16 38 H 0.05 0.96 8.14 -51.92 -0.42 0.54 16 39 H 0.26 7.16 8.31 -40.82 -0.34 6.83 16 40 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.06 1.47 7.62 -51.93 -0.40 1.08 16 LS Contribution 366.95 15.07 5.53 5.53 Total: -1.00 -37.54 366.95 -5.59 -43.13 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -4.08 Total: 2.28 kcal Atomic # 6 Polarization: 29.25 SS G_CDS: -0.94 Total: 28.31 kcal Atomic # 7 Polarization: -61.07 SS G_CDS: -0.97 Total: -62.05 kcal Atomic # 8 Polarization: -33.95 SS G_CDS: -0.10 Total: -34.04 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -37.54 -5.59 -43.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500942591.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.381 kcal (2) G-P(sol) polarization free energy of solvation -37.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds