Wall clock time and date at job start Tue Mar 31 2020 23:23:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.35058 * 125.57017 * 2 1 4 4 O 1.21296 * 127.28463 * 359.97438 * 3 2 1 5 5 C 1.49980 * 105.43200 * 179.97438 * 3 2 1 6 6 O 1.21305 * 127.28687 * 180.02562 * 5 3 2 7 7 N 1.35059 * 105.43194 * 359.97438 * 5 3 2 8 8 C 1.46502 * 125.56546 * 179.97438 * 7 5 3 9 9 C 1.50700 * 109.47141 * 90.02870 * 8 7 5 10 10 O 1.21280 * 119.99729 * 359.97438 * 9 8 7 11 11 N 1.34776 * 120.00383 * 179.97438 * 9 8 7 12 12 C 1.46497 * 120.00201 * 179.97438 * 11 9 8 13 13 C 1.53000 * 109.47380 * 179.97438 * 12 11 9 14 14 O 1.42908 * 113.41041 * 51.79697 * 13 12 11 15 15 C 1.53492 * 114.20829 * 184.99956 * 13 12 11 16 16 N 1.47060 * 88.05022 * 87.55077 * 15 13 12 17 17 C 1.36936 * 136.06089 * 207.05777 * 16 15 13 18 18 H 1.08006 * 119.99876 * 6.94734 * 17 16 15 19 19 C 1.38810 * 120.00399 * 186.94998 * 17 16 15 20 20 N 1.31612 * 120.00085 * 7.42871 * 19 17 16 21 21 Si 1.86803 * 120.00035 * 187.43356 * 19 17 16 22 22 H 1.48504 * 109.47363 * 94.80274 * 21 19 17 23 23 H 1.48502 * 109.47070 * 214.80166 * 21 19 17 24 24 H 1.48502 * 109.47114 * 334.79916 * 21 19 17 25 25 C 1.47069 * 87.88520 * 27.08980 * 16 15 13 26 26 C 1.34276 * 108.86829 * 0.22778 * 7 5 3 27 27 O 1.21475 * 124.29948 * 179.75307 * 26 7 5 28 28 H 1.09006 * 109.46720 * 0.02984 * 1 2 3 29 29 H 1.08994 * 109.47111 * 120.02345 * 1 2 3 30 30 H 1.08991 * 109.47589 * 240.02704 * 1 2 3 31 31 H 1.09001 * 109.47372 * 330.02702 * 8 7 5 32 32 H 1.08998 * 109.47299 * 210.02619 * 8 7 5 33 33 H 0.97001 * 119.99885 * 359.97438 * 11 9 8 34 34 H 1.09001 * 109.47196 * 59.99754 * 12 11 9 35 35 H 1.09004 * 109.47202 * 299.99631 * 12 11 9 36 36 H 0.96700 * 114.00191 * 313.20371 * 14 13 12 37 37 H 1.09000 * 113.46894 * 332.73515 * 15 13 12 38 38 H 1.09009 * 113.46545 * 202.36123 * 15 13 12 39 39 H 0.96999 * 120.00694 * 180.02562 * 20 19 17 40 40 H 1.09004 * 113.46737 * 87.66488 * 25 16 15 41 41 H 1.09000 * 113.47095 * 218.03902 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2506 1.0986 0.0000 4 8 1.8930 2.2576 -0.0004 5 6 3.6587 0.5822 0.0006 6 8 4.6809 1.2353 0.0013 7 7 3.5479 -0.7638 0.0015 8 6 4.6657 -1.7108 0.0019 9 6 5.0489 -2.0352 1.4228 10 8 4.4477 -1.5251 2.3444 11 7 6.0595 -2.8920 1.6695 12 6 6.4323 -3.2069 3.0508 13 6 7.5987 -4.1970 3.0513 14 8 8.6983 -3.7794 2.2395 15 6 8.0001 -4.6961 4.4462 16 7 6.9952 -5.7598 4.2997 17 6 6.2249 -6.5118 5.1459 18 1 6.2116 -6.2917 6.2032 19 6 5.4612 -7.5571 4.6449 20 7 5.5871 -7.9197 3.3860 21 14 4.2545 -8.4490 5.7576 22 1 2.9038 -7.8515 5.6029 23 1 4.2059 -9.8855 5.3844 24 1 4.6944 -8.3191 7.1699 25 6 7.1823 -5.6610 2.8443 26 6 2.2460 -1.0924 -0.0036 27 8 1.8278 -2.2328 -0.0085 28 1 -0.3633 1.0277 -0.0005 29 1 -0.3633 -0.5142 -0.8897 30 1 -0.3634 -0.5134 0.8901 31 1 5.5183 -1.2668 -0.5120 32 1 4.3677 -2.6249 -0.5117 33 1 6.5400 -3.3003 0.9324 34 1 5.5797 -3.6502 3.5652 35 1 6.7310 -2.2927 3.5639 36 1 8.4420 -3.4656 1.3614 37 1 7.7705 -3.9887 5.2430 38 1 9.0231 -5.0692 4.4960 39 1 5.0532 -8.6498 3.0358 40 1 7.9875 -6.2911 2.4664 41 1 6.2574 -5.7751 2.2790 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001500942591.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:23:05 Heat of formation + Delta-G solvation = -91.565470 kcal Electronic energy + Delta-G solvation = -29863.743769 eV Core-core repulsion = 25361.604402 eV Total energy + Delta-G solvation = -4502.139368 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.131 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.57436 -41.36486 -40.55392 -40.39930 -39.78352 -37.73665 -36.75214 -36.40248 -35.41315 -34.09711 -31.81198 -30.00428 -28.63128 -27.17400 -26.82608 -26.54733 -24.29195 -23.36764 -22.99088 -21.81572 -20.74653 -19.58360 -19.20218 -18.76916 -18.49864 -18.34428 -17.89033 -17.65842 -17.20552 -16.72250 -16.63769 -16.52653 -16.31514 -15.92856 -15.85461 -15.70628 -15.32872 -15.03036 -14.54469 -14.37238 -14.21531 -14.03543 -13.87042 -13.59669 -13.49424 -13.27382 -12.94032 -12.83487 -12.80540 -12.33173 -12.22839 -12.03315 -11.97230 -11.51765 -11.45798 -11.21542 -10.95934 -10.82349 -10.68873 -10.27143 -9.01329 -7.98504 -5.30904 -0.96155 0.49291 0.82283 1.26768 1.32074 1.39041 1.44427 1.46295 1.54580 1.99625 2.41153 2.62043 3.06946 3.24996 3.34982 3.40833 3.49719 3.53196 3.82487 3.93677 4.00913 4.11994 4.19728 4.35860 4.42211 4.57889 4.66365 4.75266 4.79864 4.84237 4.88959 5.10840 5.17830 5.30284 5.31255 5.42257 5.43307 5.83086 5.90850 6.23982 6.34982 6.79916 6.84920 7.02776 7.52725 8.51087 9.20041 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.013532 B = 0.002960 C = 0.002572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2068.665994 B = 9458.506031 C =10882.784769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.567 5.567 3 C 0.522 3.478 4 O -0.429 6.429 5 C 0.518 3.482 6 O -0.426 6.426 7 N -0.558 5.558 8 C 0.104 3.896 9 C 0.495 3.505 10 O -0.579 6.579 11 N -0.704 5.704 12 C 0.142 3.858 13 C 0.093 3.907 14 O -0.544 6.544 15 C 0.129 3.871 16 N -0.631 5.631 17 C -0.232 4.232 18 H 0.087 0.913 19 C -0.059 4.059 20 N -0.947 5.947 21 Si 0.977 3.023 22 H -0.289 1.289 23 H -0.292 1.292 24 H -0.266 1.266 25 C 0.145 3.855 26 C 0.716 3.284 27 O -0.502 6.502 28 H 0.115 0.885 29 H 0.105 0.895 30 H 0.089 0.911 31 H 0.177 0.823 32 H 0.164 0.836 33 H 0.419 0.581 34 H 0.055 0.945 35 H 0.079 0.921 36 H 0.388 0.612 37 H 0.062 0.938 38 H 0.050 0.950 39 H 0.250 0.750 40 H 0.022 0.978 41 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.259 16.664 -13.955 22.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.316 5.316 3 C 0.303 3.697 4 O -0.295 6.295 5 C 0.299 3.701 6 O -0.291 6.291 7 N -0.306 5.306 8 C -0.019 4.019 9 C 0.281 3.719 10 O -0.458 6.458 11 N -0.358 5.358 12 C 0.017 3.983 13 C 0.050 3.950 14 O -0.350 6.350 15 C 0.003 3.997 16 N -0.358 5.358 17 C -0.359 4.359 18 H 0.105 0.895 19 C -0.253 4.253 20 N -0.595 5.595 21 Si 0.805 3.195 22 H -0.216 1.216 23 H -0.218 1.218 24 H -0.191 1.191 25 C 0.019 3.981 26 C 0.419 3.581 27 O -0.371 6.371 28 H 0.134 0.866 29 H 0.123 0.877 30 H 0.107 0.893 31 H 0.195 0.805 32 H 0.181 0.819 33 H 0.257 0.743 34 H 0.073 0.927 35 H 0.097 0.903 36 H 0.238 0.762 37 H 0.080 0.920 38 H 0.067 0.933 39 H 0.059 0.941 40 H 0.040 0.960 41 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -5.440 16.960 -12.672 21.859 hybrid contribution -0.596 -1.167 0.042 1.311 sum -6.037 15.793 -12.630 21.104 Atomic orbital electron populations 1.22335 0.70982 1.06666 1.05818 1.46619 1.11138 1.06016 1.67780 1.20629 0.87474 0.85485 0.76134 1.90845 1.79573 1.17188 1.41902 1.20903 0.90988 0.82367 0.75796 1.90848 1.34103 1.62910 1.41217 1.46162 1.07830 1.08459 1.68116 1.21945 0.89960 0.96246 0.93786 1.21356 0.79475 0.78591 0.92464 1.90743 1.53743 1.53580 1.47719 1.45571 1.35384 1.45854 1.09012 1.21184 0.96076 0.97530 0.83474 1.23048 0.86173 0.92166 0.93614 1.86571 1.32092 1.86050 1.30323 1.22480 0.93338 0.89999 0.93844 1.45587 1.43370 1.43178 1.03700 1.19271 1.17608 1.08524 0.90537 0.89538 1.25622 1.02645 0.98881 0.98178 1.69992 1.43508 1.31045 1.14937 0.85090 0.78695 0.77221 0.78519 1.21592 1.21841 1.19054 1.22586 0.97410 0.91580 0.86544 1.15908 0.80906 0.84988 0.76253 1.91066 1.76287 1.19313 1.50476 0.86604 0.87686 0.89256 0.80549 0.81891 0.74317 0.92668 0.90286 0.76184 0.91966 0.93256 0.94074 0.95983 0.94153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.76 10.95 127.77 1.40 2.16 16 2 N -0.57 -9.38 3.06 -797.80 -2.44 -11.83 16 3 C 0.52 9.96 8.31 87.39 0.73 10.68 16 4 O -0.43 -9.62 17.65 -3.08 -0.05 -9.67 16 5 C 0.52 10.54 8.31 87.39 0.73 11.27 16 6 O -0.43 -10.25 17.88 -3.11 -0.06 -10.30 16 7 N -0.56 -10.50 2.15 -778.32 -1.67 -12.17 16 8 C 0.10 1.48 6.34 85.63 0.54 2.03 16 9 C 0.50 12.21 7.90 87.66 0.69 12.91 16 10 O -0.58 -20.21 16.43 -3.03 -0.05 -20.26 16 11 N -0.70 -16.06 5.32 -463.06 -2.46 -18.53 16 12 C 0.14 4.50 5.32 86.38 0.46 4.96 16 13 C 0.09 3.11 1.74 -10.42 -0.02 3.10 16 14 O -0.54 -14.62 13.56 -148.98 -2.02 -16.64 16 15 C 0.13 5.17 8.10 83.18 0.67 5.84 16 16 N -0.63 -31.60 3.55 -738.28 -2.62 -34.22 16 17 C -0.23 -12.85 10.73 84.03 0.90 -11.95 16 18 H 0.09 4.61 7.84 -2.91 -0.02 4.59 16 19 C -0.06 -3.34 5.49 84.86 0.47 -2.87 16 20 N -0.95 -55.95 11.86 21.65 0.26 -55.70 16 21 Si 0.98 45.50 29.56 68.60 2.03 47.52 16 22 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 23 H -0.29 -13.58 7.11 99.48 0.71 -12.88 16 24 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 25 C 0.15 6.44 6.62 83.21 0.55 7.00 16 26 C 0.72 14.71 8.32 179.37 1.49 16.21 16 27 O -0.50 -13.01 17.38 -3.64 -0.06 -13.07 16 28 H 0.12 0.75 7.76 -2.38 -0.02 0.73 16 29 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.18 1.04 8.10 -2.39 -0.02 1.02 16 32 H 0.16 1.57 7.97 -2.39 -0.02 1.55 16 33 H 0.42 6.12 7.24 -92.71 -0.67 5.45 16 34 H 0.05 2.26 7.93 -2.39 -0.02 2.24 16 35 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 36 H 0.39 6.29 7.50 -74.06 -0.56 5.74 16 37 H 0.06 2.31 8.12 -2.39 -0.02 2.29 16 38 H 0.05 1.97 8.14 -2.38 -0.02 1.95 16 39 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 40 H 0.02 1.06 8.14 -2.38 -0.02 1.04 16 41 H 0.04 1.94 7.62 -2.39 -0.02 1.93 16 Total: -1.00 -83.50 366.95 -0.65 -84.15 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -0.11 Total: 9.40 kcal Atomic # 6 Polarization: 52.70 SS G_CDS: 8.61 Total: 61.31 kcal Atomic # 7 Polarization: -123.50 SS G_CDS: -8.94 Total: -132.44 kcal Atomic # 8 Polarization: -67.71 SS G_CDS: -2.24 Total: -69.95 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.52 kcal Total: -83.50 -0.65 -84.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500942591.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.411 kcal (2) G-P(sol) polarization free energy of solvation -83.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds